Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01990 Brassica napus
A02p39820 Brassica napus
A03p06020 Brassica napus
A04p19640 Brassica napus
A09p06240 Brassica napus
A10p24770 Brassica napus
Aa31LG11G4450 Aethionema arabicum
Aa31sc127G40 Aethionema arabicum
Aa31sc148G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4416 Anthoceros agrestis
Actinidia06236 Actinidia chinensis
Actinidia10156 Actinidia chinensis
Actinidia14100 Actinidia chinensis
Actinidia23081 Actinidia chinensis
Actinidia33786 Actinidia chinensis
Ah.06g194550 Amaranthus hybridus
Ah.06g194560 Amaranthus hybridus
Ah.10g030270 Amaranthus hybridus
Ah.10g035710 Amaranthus hybridus
Ah.16g104790 Amaranthus hybridus
AL4G16580 Arabidopsis lyrata
AL6G24120 Arabidopsis lyrata
AL6G36910 Arabidopsis lyrata
Aqoxy1G00366 Aquilegia oxysepala
Aqoxy2G00378 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1WG5JX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9W290Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ET71SI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IW0H3E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SKK0GT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZY9Z94 Arachis hypogaea
AT2G25260 Arabidopsis thaliana
AT5G13500 Arabidopsis thaliana
AT5G25265 Arabidopsis thaliana
ATR0745G090 Amborella trichopoda
ATR0767G005 Amborella trichopoda
Atru.chr2.12 Acer truncatum
Atru.chr2.2 Acer truncatum
Atru.chr3.2897 Acer truncatum
Atru.chr7.2496 Acer truncatum
AUR62000191 Chenopodium quinoa
AUR62006541 Chenopodium quinoa
AUR62012443 Chenopodium quinoa
AUR62026855 Chenopodium quinoa
AUR62031567 Chenopodium quinoa
AUR62032643 Chenopodium quinoa
BcaB01g05354 Brassica carinata
BcaB04g19796 Brassica carinata
BcaB06g28050 Brassica carinata
BcaC02g08360 Brassica carinata
BcaC03g17914 Brassica carinata
BcaC04g19112 Brassica carinata
BcaC04g23578 Brassica carinata
BcaNung01148 Brassica carinata
BcaNung01888 Brassica carinata
BcaNung05606 Brassica carinata
BcaNung05608 Brassica carinata
BcaNung06284 Brassica carinata
BolC2t06561H Brassica oleracea
BolC2t12028H Brassica oleracea
BolC3t13204H Brassica oleracea
BolC4t27062H Brassica oleracea
BolC9t53609H Brassica oleracea
BolC9t59203H Brassica oleracea
BraA02t05171Z Brassica rapa
BraA02t08945Z Brassica rapa
BraA03t09940Z Brassica rapa
BraA04t17555Z Brassica rapa
BraA09t36268Z Brassica rapa
BraA10t44540Z Brassica rapa
C02p06200 Brassica napus
C02p59680 Brassica napus
C03p07070 Brassica napus
C04p55250 Brassica napus
C09p06890 Brassica napus
C09p63600 Brassica napus
CAN.G1739.1 Capsicum annuum
CAN.G669.7 Capsicum annuum
CAN.G709.2 Capsicum annuum
CANSAT25G1952 Cannabis sativa
CANSAT54G2890 Cannabis sativa
CANSAT56G0505 Cannabis sativa
CANSAT56G3661 Cannabis sativa
CARHR116280 Cardamine hirsuta
CARHR188220 Cardamine hirsuta
CARHR199940 Cardamine hirsuta
Carub.0004s0488 Capsella rubella
Carub.0006s1166 Capsella rubella
Carub.0006s2308 Capsella rubella
Ca_06210_v3 Cicer arietinum L.
Ca_13041_v3 Cicer arietinum L.
Ca_23965_v3 Cicer arietinum L.
Ca_23968_v3 Cicer arietinum L.
Ca_30353_v3 Cicer arietinum L.
CBR_g30255 Chara braunii
CBR_g52622 Chara braunii
Cc00_g04420 Coffea canephora
Cc01_g05400 Coffea canephora
Cc08_g00240 Coffea canephora
CDE12G0009 Ceratophyllum demersum
CDE12G0295 Ceratophyllum demersum
Cfa013107 Carpinus fangiana
Ciclev10001569m.g Citrus clementina
Ciclev10008730m.g Citrus clementina
Ciclev10015714m.g Citrus clementina
CiPaw.07G226800 Carya illinoinensis
CiPaw.08G008600 Carya illinoinensis
CiPaw.13G014400 Carya illinoinensis
CiPaw.13G150600 Carya illinoinensis
CiPaw.14G008100 Carya illinoinensis
CiPaw.14G113200 Carya illinoinensis
ClCG02G022840 Citrullus lanatus
ClCG08G010660 Citrullus lanatus
ClCG08G013520 Citrullus lanatus
COL.COLO4_18907 Corchorus olitorius
COL.COLO4_20667 Corchorus olitorius
COL.COLO4_32760 Corchorus olitorius
COL.COLO4_36250 Corchorus olitorius
Cpa.g.sc157.63 Carica papaya
Cpa.g.sc187.19 Carica papaya
Cpa.g.sc403.4 Carica papaya
Cre01.g032600 Chlamydomonas reinhardtii
Cre09.g389763 Chlamydomonas reinhardtii
Cre12.g531450 Chlamydomonas reinhardtii
Cre16.g690000 Chlamydomonas reinhardtii
CsaV3_2G032270 Cucumis sativus L.
CsaV3_6G035870 Cucumis sativus L.
CsaV3_6G038980 Cucumis sativus L.
CSS0000695 Camellia sinensis var. sinensis
CSS0000960 Camellia sinensis var. sinensis
CSS0001677 Camellia sinensis var. sinensis
CSS0002241 Camellia sinensis var. sinensis
CSS0003196 Camellia sinensis var. sinensis
CSS0015506 Camellia sinensis var. sinensis
CSS0028894 Camellia sinensis var. sinensis
CSS0030595 Camellia sinensis var. sinensis
CSS0030993 Camellia sinensis var. sinensis
CSS0032751 Camellia sinensis var. sinensis
CSS0035051 Camellia sinensis var. sinensis
CSS0035131 Camellia sinensis var. sinensis
CSS0036511 Camellia sinensis var. sinensis
CSS0038557 Camellia sinensis var. sinensis
CSS0045383 Camellia sinensis var. sinensis
CSS0047991 Camellia sinensis var. sinensis
CSS0049628 Camellia sinensis var. sinensis
DCAR_000414 Daucus carota
DCAR_002101 Daucus carota
DCAR_003009 Daucus carota
DCAR_003252 Daucus carota
DCAR_006201 Daucus carota
Dinv15046 Davidia involucrata
Dinv18157 Davidia involucrata
Dinv32023 Davidia involucrata
Dinv36166 Davidia involucrata
Duzib106G0168 Durio zibethinus
Duzib114G0812 Durio zibethinus
Duzib150G0444 Durio zibethinus
Duzib150G1645 Durio zibethinus
Duzib168G0639 Durio zibethinus
Duzib168G2200 Durio zibethinus
ECA236G2123 Erigeron canadensis
ECA236G3219 Erigeron canadensis
ECA292G0001 Erigeron canadensis
EL10Ac2g02795 Beta vulgaris
EL10Ac2g04158 Beta vulgaris
EL10Ac4g10142 Beta vulgaris
EL10Ac4g10143 Beta vulgaris
Eucgr.C01703 Eucalyptus grandis
Eucgr.G03228 Eucalyptus grandis
Eucgr.J00694 Eucalyptus grandis
Eucgr.J01177 Eucalyptus grandis
FAN01G0229 Fragaria x ananassa
FAN01G3078 Fragaria x ananassa
FAN06G1580 Fragaria x ananassa
FAN10G4314 Fragaria x ananassa
FAN15G2913 Fragaria x ananassa
FAN20G0375 Fragaria x ananassa
FAN24G0739 Fragaria x ananassa
FAN27G2517 Fragaria x ananassa
FvH4_2g28340 Fragaria vesca
FvH4_7g03230 Fragaria vesca
Glyma.02G279600 Glycine max
Glyma.07G231500 Glycine max
Glyma.13G196300 Glycine max
Glyma.14G035100 Glycine max
Glyma.14G112600 Glycine max
Glyma.15G234500 Glycine max
Glyma.17G215300 Glycine max
Glyma.20G040500 Glycine max
Gohir.A06G174700 Gossypium hirsutum
Gohir.A07G030100 Gossypium hirsutum
Gohir.A09G110400 Gossypium hirsutum
Gohir.A10G185700 Gossypium hirsutum
Gohir.D06G184700 Gossypium hirsutum
Gohir.D07G033900 Gossypium hirsutum
Gohir.D09G106700 Gossypium hirsutum
Gohir.D10G192900 Gossypium hirsutum
Gorai.001G035500 Gossypium raimondii
Gorai.006G124300 Gossypium raimondii
Gorai.010G216000 Gossypium raimondii
Gorai.011G215700 Gossypium raimondii
GSVIVG01035923001 Vitis vinifera
GSVIVG01036672001 Vitis vinifera
GSVIVG01037276001 Vitis vinifera
HanXRQChr04g0113491 Helianthus annuus
HanXRQChr04g0113511 Helianthus annuus
HanXRQChr13g0403131 Helianthus annuus
HanXRQChr15g0481461 Helianthus annuus
Haze_03027 Corylus avellana
Haze_03032 Corylus avellana
Haze_21465 Corylus avellana
Haze_23229 Corylus avellana
Hma1.2p1_0105F.1_g050660 Hydrangea macrophylla
Hma1.2p1_0228F.1_g096540 Hydrangea macrophylla
Hma1.2p1_0460F.1_g157410 Hydrangea macrophylla
HPP92_003236 Vanilla planifolia
HPP92_013979 Vanilla planifolia
Hund15742 Selenicereus undatus
Hund18866 Selenicereus undatus
Hund21981 Selenicereus undatus
Lalb_Chr01g0007331 Lupinus albus
Lalb_Chr10g0106251 Lupinus albus
Lalb_Chr14g0361841 Lupinus albus
Lalb_Chr17g0347911 Lupinus albus
Lalb_Chr19g0133091 Lupinus albus
Lj1A279G19 Lonicera japonica
Lj3g0013626 Lotus japonicus
Lj5g0005596 Lotus japonicus
Lj8C731T10 Lonicera japonica
Lj9A660G60 Lonicera japonica
LjContig00564g0011532 Lotus japonicus
Lsat_1_v5_gn_2_36360 Lactuca sativa
Lsat_1_v5_gn_6_20140 Lactuca sativa
Lsat_1_v5_gn_7_31821 Lactuca sativa
Manes.01G178700 Manihot esculenta
Manes.02G139400 Manihot esculenta
Manes.04G158600 Manihot esculenta
Manes.16G125600 Manihot esculenta
Mapoly0121s0022 Marchantia polymorpha
MBI15_g25661_MAGBIO Magnolia biondii
MBI17_g26527_MAGBIO Magnolia biondii
MCO05G056 Micromonas commoda
MCO07G032 Micromonas commoda
MCO09G371 Micromonas commoda
MCO15G242 Micromonas commoda
MCO16G340 Micromonas commoda
MD02G1284100 Malus domestica
MD03G1165800 Malus domestica
MD07G1050100 Malus domestica
MD08G1153200 Malus domestica
MD11G1185300 Malus domestica
MD15G1130300 Malus domestica
Medtr1g012920 Medicago truncatula
Medtr5g089520 Medicago truncatula
Medtr8g039290 Medicago truncatula
MELO3C011279.2 Cucumis melo
MELO3C011395.2 Cucumis melo
MELO3C014561.2 Cucumis melo
Migut.A00010 Erythranthe guttata
Migut.D00659 Erythranthe guttata
Migut.E01821 Erythranthe guttata
Migut.N01850 Erythranthe guttata
MSTRG.11597 Avicennia marina
MSTRG.1734 Avicennia marina
MSTRG.18460 Avicennia marina
MSTRG.20513 Avicennia marina
MSTRG.21347 Avicennia marina
MSTRG.5069 Avicennia marina
Nitab4.5_0000730g0070 Nicotiana tabacum
Nitab4.5_0001500g0070 Nicotiana tabacum
Nitab4.5_0002992g0050 Nicotiana tabacum
Nitab4.5_0005958g0010 Nicotiana tabacum
Nn2g12226 Nelumbo nucifera
Nn2g14492 Nelumbo nucifera
Nn2g14815 Nelumbo nucifera
Nn7g36709 Nelumbo nucifera
Nn8g39697 Nelumbo nucifera
Oeu010891.1 Olea europaea
Oeu016696.2 Olea europaea
Oeu035365.1 Olea europaea
Oeu038921.1 Olea europaea
Oeu041995.3 Olea europaea
Oeu049526.1 Olea europaea
Os01g0272600 Oryza sativa ssp. japonica
Os05g0386000 Oryza sativa ssp. japonica
Os06g0180000 Oryza sativa ssp. japonica
Peaxi162Scf00004g04525 Petunia axillaris
Peaxi162Scf00012g01521 Petunia axillaris
Peaxi162Scf00116g00093 Petunia axillaris
PGR031G0829 Punica granatum
PGR031G2378 Punica granatum
PGR031G3429 Punica granatum
PGR119G0484 Punica granatum
PGSC0003DMG400009460 Solanum tuberosum
PGSC0003DMG400012785 Solanum tuberosum
PGSC0003DMG400015626 Solanum tuberosum
Phvul.001G047600 Phaseolus vulgaris
Phvul.006G014000 Phaseolus vulgaris
Phvul.008G201100 Phaseolus vulgaris
Phvul.011G206200 Phaseolus vulgaris
Potri.001G028100 Populus trichocarpa
Potri.001G275600 Populus trichocarpa
Potri.003G195600 Populus trichocarpa
Potri.006G258800 Populus trichocarpa
Potri.009G070000 Populus trichocarpa
Potri.018G023100 Populus trichocarpa
Pp3c10_16010 Physcomitrium patens
Pp3c14_17200 Physcomitrium patens
PRCOL_00000161 Prasinoderma coloniale
PRCOL_00001236 Prasinoderma coloniale
PRCOL_00004700 Prasinoderma coloniale
PRCOL_00006338 Prasinoderma coloniale
PRCOL_00006929 Prasinoderma coloniale
Prupe.1G485800 Prunus persica
Prupe.2G038500 Prunus persica
Prupe.4G266100 Prunus persica
Psat0s3806g0040 Pisum sativum
Psat4g145800 Pisum sativum
Psat6g028240 Pisum sativum
PSO017G6362 Papaver somniferum
PSO170G4455 Papaver somniferum
PSO339G1752 Papaver somniferum
PSO339G2939 Papaver somniferum
PSO384G1470 Papaver somniferum
PSO384G2152 Papaver somniferum
QL01p017170 Quercus lobata
QL02p020451 Quercus lobata
QL04p016360 Quercus lobata
QL04p016675 Quercus lobata
RcHm_v2.0_Chr1g0325271 Rosa chinensis
RcHm_v2.0_Chr5g0050591 Rosa chinensis
RcHm_v2.0_Chr6g0297261 Rosa chinensis
Rhsim07G0067400 Rhododendron simsii
Rhsim07G0161800 Rhododendron simsii
Sabra03G0146000 Salix brachista
Sabra06G0202300 Salix brachista
Sabra09G0052900 Salix brachista
Sabra16G0169900 Salix brachista
Sabra18G0025600 Salix brachista
SalBow4G0752 Salvia bowleyana
SalBow5G5749 Salvia bowleyana
SalBow6G0229 Salvia bowleyana
Sc10g0004440 Simmondsia chinensis
Sc11g0006500 Simmondsia chinensis
Sc23g0006580 Simmondsia chinensis
Sed0002039 Sechium edule
Sed0003257 Sechium edule
Sed0008219 Sechium edule
Sed0012890 Sechium edule
Sed0020768 Sechium edule
SEGI_34877 Sequoiadendron giganteum
SGA_v2.0_scaffold139G35416 Striga asiatica
SGA_v2.0_scaffold139G35421 Striga asiatica
SGA_v2.0_scaffold20G09083 Striga asiatica
SGA_v2.0_scaffold211G42120 Striga asiatica
SGA_v2.0_scaffold29G12241 Striga asiatica
SGA_v2.0_scaffold29G12246 Striga asiatica
SGA_v2.0_scaffold43G16296 Striga asiatica
SGA_v2.0_scaffold64G21985 Striga asiatica
SMO141G0039 Selaginella moellendorffii
SMO147G0298 Selaginella moellendorffii
SMO329G0033 Selaginella moellendorffii
Solyc07g021170.3 Solanum lycopersicum
Solyc08g041770.3 Solanum lycopersicum
Solyc11g064850.2 Solanum lycopersicum
Solyc12g044760.3 Solanum lycopersicum
Sopen07g010140 Solanum pennellii
Sopen08g011920 Solanum pennellii
Sopen11g024460 Solanum pennellii
Sopen12g025660 Solanum pennellii
Sp2g22280 Schrenkiella parvula
Sp4g04380 Schrenkiella parvula
Sp6g30520 Schrenkiella parvula
TAR383G0253 Trochodendron aralioides
TAR633G1209 Trochodendron aralioides
TAR636G1512 Trochodendron aralioides
THA.LOC104803643 Tarenaya hassleriana
THA.LOC104814115 Tarenaya hassleriana
THA.LOC104815011 Tarenaya hassleriana
THA.LOC104816926 Tarenaya hassleriana
THA.LOC104826730 Tarenaya hassleriana
Thecc.09G019900 Theobroma cacao
Thecc.09G248400 Theobroma cacao
Thecc.10G153800 Theobroma cacao
Thhalv10000212m.g Eutrema salsugineum
Thhalv10004426m.g Eutrema salsugineum
Thhalv10013935m.g Eutrema salsugineum
TPR.G15852 Trifolium pratense
TPR.G30445 Trifolium pratense
TPR.G38886 Trifolium pratense
TWI15G0803 Tripterygium wilfordii
TWI34G1026 Tripterygium wilfordii
TWI38G0784 Tripterygium wilfordii
TWI63G0090 Tripterygium wilfordii
TWI79G1496 Tripterygium wilfordii
unitig_0.g299 Utricularia gibba
unitig_578.g16658 Utricularia gibba
vmacro13755 Vaccinium macrocarpon
vmacro22578 Vaccinium macrocarpon
VMungo0540G2325 Vigna mungo
VMungo0647G1259 Vigna mungo
VMungo0647G1849 Vigna mungo
VMungo1127G1410 Vigna mungo
Zm00001eb287070 Zea mays
Zm00001eb332930 Zea mays
Zm00001eb374910 Zea mays

User provided reference genes

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