Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21880 Brassica napus
A05p24580 Brassica napus
A07p26130 Brassica napus
A09p54730 Brassica napus
A09p68430 Brassica napus
A10p01620 Brassica napus
Aa31LG10G16680 Aethionema arabicum
Aa31LG10G6410 Aethionema arabicum
Aa31LG1G9590 Aethionema arabicum
Aa31sc442G40 Aethionema arabicum
Actinidia00675 Actinidia chinensis
Actinidia01463 Actinidia chinensis
Actinidia09170 Actinidia chinensis
Actinidia21065 Actinidia chinensis
Actinidia21066 Actinidia chinensis
Actinidia21067 Actinidia chinensis
Actinidia27078 Actinidia chinensis
Actinidia32251 Actinidia chinensis
Actinidia34590 Actinidia chinensis
Actinidia40252 Actinidia chinensis
Actinidia40253 Actinidia chinensis
Ah.06g189490 Amaranthus hybridus
AL1G12440 Arabidopsis lyrata
AL5G45670 Arabidopsis lyrata
AL7G39670 Arabidopsis lyrata
Aqoxy2G03050 Aquilegia oxysepala
Aqoxy5G00656 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1RFZ00 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.338AY0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3KJA5W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JC6JBF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X55566 Arachis hypogaea
AT1G02990 Arabidopsis thaliana
AT3G62900 Arabidopsis thaliana
AT4G15730 Arabidopsis thaliana
ATR0706G291 Amborella trichopoda
Atru.chr4.2803 Acer truncatum
Atru.chr5.1234 Acer truncatum
AUR62000806 Chenopodium quinoa
AUR62005162 Chenopodium quinoa
AUR62008557 Chenopodium quinoa
AUR62033198 Chenopodium quinoa
BcaB02g07313 Brassica carinata
BcaB03g15745 Brassica carinata
BcaC05g24581 Brassica carinata
BcaC07g40751 Brassica carinata
BcaC07g42282 Brassica carinata
BcaC08g45244 Brassica carinata
BcaC09g50263 Brassica carinata
BcaNung00252 Brassica carinata
BolC1t02669H Brassica oleracea
BolC5t28940H Brassica oleracea
BolC6t38013H Brassica oleracea
BolC8t51343H Brassica oleracea
BolC8t52819H Brassica oleracea
BraA01t02094Z Brassica rapa
BraA07t30259Z Brassica rapa
BraA09t40882Z Brassica rapa
BraA09t42179Z Brassica rapa
BraA10t42438Z Brassica rapa
C01p09710 Brassica napus
C01p27210 Brassica napus
C05p01610 Brassica napus
C06p28440 Brassica napus
C08p37590 Brassica napus
C08p53050 Brassica napus
CAN.G1059.6 Capsicum annuum
CAN.G1492.9 Capsicum annuum
CAN.G1777.3 Capsicum annuum
CAN.G21.8 Capsicum annuum
CAN.G223.17 Capsicum annuum
CAN.G279.19 Capsicum annuum
CAN.G280.29 Capsicum annuum
CARHR002320 Cardamine hirsuta
CARHR173180 Cardamine hirsuta
CARHR290130 Cardamine hirsuta
CARHR290140 Cardamine hirsuta
Carub.0001s0212 Capsella rubella
Carub.0005s2954 Capsella rubella
Carub.0007s2599 Capsella rubella
Ca_02419_v3 Cicer arietinum L.
Ca_09127_v3 Cicer arietinum L.
CBR_g22077 Chara braunii
Cc01_g20490 Coffea canephora
Cc03_g02050 Coffea canephora
CDE02G0558 Ceratophyllum demersum
CDE02G3704 Ceratophyllum demersum
CDE05G1706 Ceratophyllum demersum
CDE05G2265 Ceratophyllum demersum
CDE08G0231 Ceratophyllum demersum
CDE08G1159 Ceratophyllum demersum
CDE09G0129 Ceratophyllum demersum
CDE11G0638 Ceratophyllum demersum
Cfa005989 Carpinus fangiana
Ciclev10004133m.g Citrus clementina
Ciclev10018467m.g Citrus clementina
CiPaw.01G150400 Carya illinoinensis
CiPaw.02G084400 Carya illinoinensis
CiPaw.07G103300 Carya illinoinensis
CiPaw.07G103400 Carya illinoinensis
CiPaw.08G098900 Carya illinoinensis
ClCG06G005270 Citrullus lanatus
ClCG09G006210 Citrullus lanatus
COL.COLO4_08001 Corchorus olitorius
Cpa.g.sc441.5 Carica papaya
Cpa.g.sc9.187 Carica papaya
CsaV3_6G017320 Cucumis sativus L.
CsaV3_7G028920 Cucumis sativus L.
CSS0005237 Camellia sinensis var. sinensis
CSS0012470 Camellia sinensis var. sinensis
CSS0013396 Camellia sinensis var. sinensis
CSS0022780 Camellia sinensis var. sinensis
CSS0024106 Camellia sinensis var. sinensis
CSS0040184 Camellia sinensis var. sinensis
CSS0040603 Camellia sinensis var. sinensis
CSS0040610 Camellia sinensis var. sinensis
DCAR_002805 Daucus carota
DCAR_005810 Daucus carota
DCAR_024560 Daucus carota
Dinv19735 Davidia involucrata
Dinv30777 Davidia involucrata
Dinv38303 Davidia involucrata
Dinv38304 Davidia involucrata
Dinv44398 Davidia involucrata
Duzib052G0087 Durio zibethinus
Duzib133G1144 Durio zibethinus
Duzib133G1221 Durio zibethinus
Duzib138G1650 Durio zibethinus
Duzib151G0932 Durio zibethinus
Duzib212G0661 Durio zibethinus
ECA236G1714 Erigeron canadensis
ECA240G0158 Erigeron canadensis
ECA247G0377 Erigeron canadensis
ECA247G2733 Erigeron canadensis
EL10Ac4g09403 Beta vulgaris
EL10Ac7g17519 Beta vulgaris
Eucgr.H03883 Eucalyptus grandis
Eucgr.K03450 Eucalyptus grandis
Eucgr.K03451 Eucalyptus grandis
FAN07G1583 Fragaria x ananassa
FAN15G0221 Fragaria x ananassa
FAN17G2495 Fragaria x ananassa
FAN20G2465 Fragaria x ananassa
FAN22G2038 Fragaria x ananassa
FAN24G2366 Fragaria x ananassa
FAN27G0147 Fragaria x ananassa
FvH4_2g25070 Fragaria vesca
FvH4_4g17691 Fragaria vesca
FvH4_4g17693 Fragaria vesca
Glyma.03G211200 Glycine max
Glyma.07G249600 Glycine max
Glyma.09G046300 Glycine max
Glyma.15G154200 Glycine max
Glyma.17G024800 Glycine max
Glyma.19G208400 Glycine max
Gohir.A02G048400 Gossypium hirsutum
Gohir.A08G043300 Gossypium hirsutum
Gohir.A08G073675 Gossypium hirsutum
Gohir.A08G073750 Gossypium hirsutum
Gohir.A10G162800 Gossypium hirsutum
Gohir.A11G116500 Gossypium hirsutum
Gohir.A12G009600 Gossypium hirsutum
Gohir.D02G053700 Gossypium hirsutum
Gohir.D08G053100 Gossypium hirsutum
Gohir.D08G083100 Gossypium hirsutum
Gohir.D10G169200 Gossypium hirsutum
Gohir.D11G121600 Gossypium hirsutum
Gohir.D12G009600 Gossypium hirsutum
Gorai.004G053100 Gossypium raimondii
Gorai.004G086900 Gossypium raimondii
Gorai.005G059300 Gossypium raimondii
Gorai.007G130300 Gossypium raimondii
Gorai.008G009600 Gossypium raimondii
Gorai.011G188700 Gossypium raimondii
GSVIVG01000093001 Vitis vinifera
GSVIVG01000094001 Vitis vinifera
GSVIVG01000099001 Vitis vinifera
GSVIVG01010964001 Vitis vinifera
GSVIVG01017765001 Vitis vinifera
HanXRQChr01g0020781 Helianthus annuus
HanXRQChr03g0079941 Helianthus annuus
HanXRQChr03g0079951 Helianthus annuus
HanXRQChr04g0118131 Helianthus annuus
HanXRQChr05g0133371 Helianthus annuus
HanXRQChr10g0283911 Helianthus annuus
HanXRQChr13g0409851 Helianthus annuus
HanXRQChr15g0466021 Helianthus annuus
Haze_01233 Corylus avellana
Haze_04174 Corylus avellana
Haze_04845 Corylus avellana
Haze_04853 Corylus avellana
Haze_04856 Corylus avellana
Haze_04903 Corylus avellana
HPP92_000398 Vanilla planifolia
HPP92_000399 Vanilla planifolia
HPP92_000404 Vanilla planifolia
HPP92_000405 Vanilla planifolia
HPP92_000406 Vanilla planifolia
HPP92_000407 Vanilla planifolia
HPP92_000408 Vanilla planifolia
HPP92_003148 Vanilla planifolia
Hund05400 Selenicereus undatus
Hund07080 Selenicereus undatus
Hund18101 Selenicereus undatus
Hund21697 Selenicereus undatus
Lalb_Chr02g0143151 Lupinus albus
Lalb_Chr15g0078681 Lupinus albus
Lalb_Chr15g0083591 Lupinus albus
Lalb_Chr18g0051781 Lupinus albus
Lalb_Chr18g0051791 Lupinus albus
Lalb_Chr20g0114461 Lupinus albus
Lalb_Chr20g0114471 Lupinus albus
Lalb_Chr21g0306771 Lupinus albus
Lj1A35G65 Lonicera japonica
Lj1g0021429 Lotus japonicus
Lj2A1188G52 Lonicera japonica
Lj3A814T59 Lonicera japonica
Lj3A814T60 Lonicera japonica
Lj3C817G10 Lonicera japonica
Lj4g0024545 Lotus japonicus
Lj6A673T89 Lonicera japonica
Lj6C673T5 Lonicera japonica
Lj6g0002294 Lotus japonicus
Lsat_1_v5_gn_5_49141 Lactuca sativa
Lsat_1_v5_gn_5_94181 Lactuca sativa
Lsat_1_v5_gn_6_74700 Lactuca sativa
Lsat_1_v5_gn_8_54460 Lactuca sativa
Lsat_1_v5_gn_9_2161 Lactuca sativa
Lsat_1_v5_gn_9_79060 Lactuca sativa
Manes.01G215600 Manihot esculenta
Manes.03G193000 Manihot esculenta
Manes.05G066000 Manihot esculenta
Mapoly0011s0099 Marchantia polymorpha
Mapoly0051s0072 Marchantia polymorpha
Mapoly0067s0058 Marchantia polymorpha
MBI03_g12030_MAGBIO Magnolia biondii
MBI03_g12031_MAGBIO Magnolia biondii
MBI03_g21286_MAGBIO Magnolia biondii
MBI03_g21287_MAGBIO Magnolia biondii
MBI03_g21289_MAGBIO Magnolia biondii
MBI03_g23810_MAGBIO Magnolia biondii
MBI03_g26481_MAGBIO Magnolia biondii
MBI03_g33002_MAGBIO Magnolia biondii
MBI05_g17876_MAGBIO Magnolia biondii
MBI05_g17877_MAGBIO Magnolia biondii
MBI05_g20782_MAGBIO Magnolia biondii
MBI19_g23996_MAGBIO Magnolia biondii
MD03G1282000 Malus domestica
MD11G1301800 Malus domestica
MD13G1170600 Malus domestica
MD16G1172200 Malus domestica
Medtr2g437350 Medicago truncatula
Medtr2g437370 Medicago truncatula
Medtr7g108330 Medicago truncatula
MELO3C016046.2 Cucumis melo
MELO3C021346.2 Cucumis melo
MELO3C032736.2 Cucumis melo
Migut.D00180 Erythranthe guttata
Migut.G00180 Erythranthe guttata
Migut.M00135 Erythranthe guttata
MSTRG.10083 Avicennia marina
MSTRG.21610 Avicennia marina
MSTRG.3931 Avicennia marina
Nitab4.5_0000627g0020 Nicotiana tabacum
Nitab4.5_0000784g0050 Nicotiana tabacum
Nitab4.5_0001447g0070 Nicotiana tabacum
Nitab4.5_0001697g0130 Nicotiana tabacum
Nitab4.5_0004537g0020 Nicotiana tabacum
Nitab4.5_0005696g0040 Nicotiana tabacum
Nn3g21383 Nelumbo nucifera
Nn4g25933 Nelumbo nucifera
Oeu008493.2 Olea europaea
Oeu020926.1 Olea europaea
Oeu021108.1 Olea europaea
Oeu030974.2 Olea europaea
Oeu057580.1 Olea europaea
Oeu064427.1 Olea europaea
Os03g0347300 Oryza sativa ssp. japonica
Os05g0371100 Oryza sativa ssp. japonica
Os07g0669800 Oryza sativa ssp. japonica
Peaxi162Scf00067g01920 Petunia axillaris
Peaxi162Scf00386g00034 Petunia axillaris
Peaxi162Scf00572g00112 Petunia axillaris
PGR004G2052 Punica granatum
PGR044G1975 Punica granatum
PGR119G2331 Punica granatum
PGSC0003DMG400002258 Solanum tuberosum
PGSC0003DMG400002259 Solanum tuberosum
PGSC0003DMG400002260 Solanum tuberosum
PGSC0003DMG400005346 Solanum tuberosum
PGSC0003DMG400011983 Solanum tuberosum
PGSC0003DMG400015089 Solanum tuberosum
PGSC0003DMG400015091 Solanum tuberosum
PGSC0003DMG400025536 Solanum tuberosum
PGSC0003DMG400046824 Solanum tuberosum
PGSC0003DMG401011362 Solanum tuberosum
PGSC0003DMG402011362 Solanum tuberosum
PGSC0003DMG403011362 Solanum tuberosum
Phvul.001G204500 Phaseolus vulgaris
Phvul.003G103100 Phaseolus vulgaris
Phvul.009G246100 Phaseolus vulgaris
Potri.002G209409 Populus trichocarpa
Potri.005G028700 Populus trichocarpa
Potri.013G020200 Populus trichocarpa
Potri.014G132900 Populus trichocarpa
Pp3c15_25620 Physcomitrium patens
Pp3c15_25623 Physcomitrium patens
Pp3c9_25870 Physcomitrium patens
Prupe.1G139000 Prunus persica
Prupe.8G255400 Prunus persica
Psat1g152560 Pisum sativum
Psat2g128960 Pisum sativum
Psat3g023680 Pisum sativum
Psat4g081160 Pisum sativum
Psat5g043120 Pisum sativum
PSO170G0358 Papaver somniferum
PSO210G1805 Papaver somniferum
PSO210G3508 Papaver somniferum
PSO832G3901 Papaver somniferum
QL03p007439 Quercus lobata
QL03p007656 Quercus lobata
QL06p008333 Quercus lobata
QL12p030643 Quercus lobata
RcHm_v2.0_Chr4g0421671 Rosa chinensis
RcHm_v2.0_Chr6g0293091 Rosa chinensis
Rhsim04G0219600 Rhododendron simsii
Rhsim13G0015300 Rhododendron simsii
Sabra02G0150800 Salix brachista
Sabra05G0033300 Salix brachista
Sabra13G0022700 Salix brachista
SalBow2G2718 Salvia bowleyana
SalBow3G2858 Salvia bowleyana
Sc05g0004350 Simmondsia chinensis
Sc09g0003100 Simmondsia chinensis
Sc19g0005060 Simmondsia chinensis
Sed0012078 Sechium edule
Sed0016218 Sechium edule
Sed0018217 Sechium edule
SEGI_07782 Sequoiadendron giganteum
SEGI_16739 Sequoiadendron giganteum
SEGI_18918 Sequoiadendron giganteum
SEGI_24085 Sequoiadendron giganteum
SEGI_34526 Sequoiadendron giganteum
SEGI_40575 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00389 Striga asiatica
SGA_v2.0_scaffold2G01415 Striga asiatica
SGA_v2.0_scaffold970G53759 Striga asiatica
SHI00279 Sapria himalayana
SHI15291 Sapria himalayana
SMO334G0012 Selaginella moellendorffii
Solyc01g067600.3 Solanum lycopersicum
Solyc04g025570.3 Solanum lycopersicum
Solyc06g008720.4 Solanum lycopersicum
Solyc08g067140.1 Solanum lycopersicum
Solyc08g067490.1 Solanum lycopersicum
Solyc08g067570.1 Solanum lycopersicum
Solyc08g067590.1 Solanum lycopersicum
Solyc09g074670.4 Solanum lycopersicum
Solyc11g020010.1 Solanum lycopersicum
Solyc12g017610.1 Solanum lycopersicum
Sopen01g029560 Solanum pennellii
Sopen05g008200 Solanum pennellii
Sopen06g003510 Solanum pennellii
Sopen06g026130 Solanum pennellii
Sopen06g026720 Solanum pennellii
Sopen06g029100 Solanum pennellii
Sopen08g021430 Solanum pennellii
Sopen08g021510 Solanum pennellii
Sopen08g021520 Solanum pennellii
Sopen08g021540 Solanum pennellii
Sopen09g029550 Solanum pennellii
Sopen12g008350 Solanum pennellii
Sp1g01980 Schrenkiella parvula
Sp5g00620 Schrenkiella parvula
Sp7g13990 Schrenkiella parvula
TAR362G0978 Trochodendron aralioides
TAR633G1371 Trochodendron aralioides
TAR633G2509 Trochodendron aralioides
TAR633G2809 Trochodendron aralioides
TAR636G3189 Trochodendron aralioides
THA.LOC104801627 Tarenaya hassleriana
THA.LOC104802158 Tarenaya hassleriana
THA.LOC104808944 Tarenaya hassleriana
THA.LOC104827368 Tarenaya hassleriana
THA.LOC104827369 Tarenaya hassleriana
Thecc.01G293700 Theobroma cacao
Thecc.04G282200 Theobroma cacao
Thhalv10005746m.g Eutrema salsugineum
Thhalv10006698m.g Eutrema salsugineum
TPR.G21916 Trifolium pratense
TPR.G9286 Trifolium pratense
TWI09G0200 Tripterygium wilfordii
TWI14G0264 Tripterygium wilfordii
TWI14G1206 Tripterygium wilfordii
TWI23G1006 Tripterygium wilfordii
TWI59G0042 Tripterygium wilfordii
unitig_0.g1182 Utricularia gibba
unitig_61.g26312 Utricularia gibba
vmacro02489 Vaccinium macrocarpon
vmacro08125 Vaccinium macrocarpon
VMungo0251G0751 Vigna mungo
VMungo0464G1627 Vigna mungo
VMungo1127G1711 Vigna mungo
VMungo1215G2563 Vigna mungo
VMungo1309G1422 Vigna mungo
VMungo1383G1275 Vigna mungo
VMungo1383G2550 Vigna mungo
Zm00001eb016680 Zea mays
Zm00001eb111100 Zea mays
Zm00001eb330260 Zea mays
Zm00001eb350990 Zea mays

User provided reference genes

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