Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12900 Brassica napus
A09p07310 Brassica napus
Aa31LG11G1900 Aethionema arabicum
Aa31LG6G3590 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.311 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4802 Anthoceros agrestis
Actinidia01927 Actinidia chinensis
Actinidia05591 Actinidia chinensis
Actinidia13594 Actinidia chinensis
Ah.13g066540 Amaranthus hybridus
AL6G39070 Arabidopsis lyrata
AL7G32440 Arabidopsis lyrata
AL8G38200 Arabidopsis lyrata
Aqoxy1G00822 Aquilegia oxysepala
Aqoxy1G02697 Aquilegia oxysepala
Aqoxy339s001 Aquilegia oxysepala
Aqoxy7G00517 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.21WDRA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5G5TDX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5H7955 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5TEF42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AGA1SQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FRXD3L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YE8881 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZGP79Y Arachis hypogaea
AT4G21580 Arabidopsis thaliana
AT5G61510 Arabidopsis thaliana
ATR0057G022 Amborella trichopoda
ATR0693G262 Amborella trichopoda
ATR0693G362 Amborella trichopoda
Atru.chr10.1984 Acer truncatum
Atru.chr10.1985 Acer truncatum
Atru.chr10.1989 Acer truncatum
AUR62002230 Chenopodium quinoa
AUR62014739 Chenopodium quinoa
AUR62015441 Chenopodium quinoa
AUR62016918 Chenopodium quinoa
BcaC04g23446 Brassica carinata
BcaNung01433 Brassica carinata
BcaNung02778 Brassica carinata
BolC1t01506H Brassica oleracea
BolC9t53735H Brassica oleracea
BraA01t01234Z Brassica rapa
BraA09t36386Z Brassica rapa
C01p15540 Brassica napus
C03p83230 Brassica napus
C09p08250 Brassica napus
CAN.G1181.11 Capsicum annuum
CAN.G1649.4 Capsicum annuum
CAN.G330.2 Capsicum annuum
CANSAT56G2247 Cannabis sativa
CARHR228260 Cardamine hirsuta
CARHR228270 Cardamine hirsuta
CARHR275280 Cardamine hirsuta
Carub.0007s1983 Capsella rubella
Carub.0008s2220 Capsella rubella
Ca_00270_v3 Cicer arietinum L.
Ca_00271_v3 Cicer arietinum L.
Ca_26000_v3 Cicer arietinum L.
CBR_g10943 Chara braunii
CBR_g10944 Chara braunii
Cc02_g04500 Coffea canephora
Cc02_g04510 Coffea canephora
Cc02_g12600 Coffea canephora
Cc09_g10020 Coffea canephora
Cc09_g10030 Coffea canephora
Cc10_g04960 Coffea canephora
Cc10_g04970 Coffea canephora
CDE05G0002 Ceratophyllum demersum
CDE05G1551 Ceratophyllum demersum
CDE11G0092 Ceratophyllum demersum
CDE11G1200 Ceratophyllum demersum
Cfa000368 Carpinus fangiana
Cfa000369 Carpinus fangiana
Cfa006297 Carpinus fangiana
Cfa012920 Carpinus fangiana
Cfa022829 Carpinus fangiana
Cfa023926 Carpinus fangiana
Cfa026134 Carpinus fangiana
Cfa026224 Carpinus fangiana
Cfa027084 Carpinus fangiana
Cfa027125 Carpinus fangiana
Ciclev10005123m.g Citrus clementina
Ciclev10015925m.g Citrus clementina
CiPaw.07G056100 Carya illinoinensis
CiPaw.07G237100 Carya illinoinensis
CiPaw.09G159300 Carya illinoinensis
CiPaw.10G119300 Carya illinoinensis
CiPaw.10G119700 Carya illinoinensis
ClCG01G004540 Citrullus lanatus
ClCG01G022620 Citrullus lanatus
COL.COLO4_14077 Corchorus olitorius
COL.COLO4_14078 Corchorus olitorius
COL.COLO4_14113 Corchorus olitorius
COL.COLO4_31558 Corchorus olitorius
COL.COLO4_31559 Corchorus olitorius
Cpa.g.sc13.275 Carica papaya
Cpa.g.sc27.107 Carica papaya
Cpa.g.sc27.108 Carica papaya
CsaV3_1G014810 Cucumis sativus L.
CsaV3_5G004760 Cucumis sativus L.
CsaV3_6G049820 Cucumis sativus L.
CSS0028646 Camellia sinensis var. sinensis
CSS0030680 Camellia sinensis var. sinensis
CSS0049882 Camellia sinensis var. sinensis
DCAR_008065 Daucus carota
DCAR_009451 Daucus carota
Dinv16853 Davidia involucrata
Dinv39801 Davidia involucrata
Duzib160G0467 Durio zibethinus
Duzib205G1029 Durio zibethinus
Duzib235G0785 Durio zibethinus
ECA234G0352 Erigeron canadensis
ECA234G2590 Erigeron canadensis
ECA238G3464 Erigeron canadensis
EL10Ac3g05866 Beta vulgaris
EL10Ac8g20626 Beta vulgaris
Eucgr.A02651 Eucalyptus grandis
Eucgr.A02652 Eucalyptus grandis
Eucgr.A02907 Eucalyptus grandis
Eucgr.A02908 Eucalyptus grandis
Eucgr.A02910 Eucalyptus grandis
Eucgr.D00699 Eucalyptus grandis
Eucgr.L02843 Eucalyptus grandis
FAN01G0887 Fragaria x ananassa
FAN03G0079 Fragaria x ananassa
FAN06G0102 Fragaria x ananassa
FAN06G2630 Fragaria x ananassa
FAN10G1932 Fragaria x ananassa
FAN11G0633 Fragaria x ananassa
FAN11G1894 Fragaria x ananassa
FAN16G2449 Fragaria x ananassa
FAN16G3333 Fragaria x ananassa
FAN21G0425 Fragaria x ananassa
FAN21G2301 Fragaria x ananassa
FAN21G4059 Fragaria x ananassa
FAN25G1077 Fragaria x ananassa
FAN25G3513 Fragaria x ananassa
FvH4_3g02170 Fragaria vesca
FvH4_3g02190 Fragaria vesca
FvH4_3g04320 Fragaria vesca
FvH4_3g04340 Fragaria vesca
FvH4_3g18062 Fragaria vesca
FvH4_3g18080 Fragaria vesca
FvH4_6g30490 Fragaria vesca
FvH4_7g27132 Fragaria vesca
FvH4_7g27140 Fragaria vesca
Glyma.09G001200 Glycine max
Glyma.12G241000 Glycine max
Glyma.12G241100 Glycine max
Glyma.15G068300 Glycine max
Gohir.A04G046833 Gossypium hirsutum
Gohir.A05G164350 Gossypium hirsutum
Gohir.A05G164400 Gossypium hirsutum
Gohir.A07G042600 Gossypium hirsutum
Gohir.A07G042700 Gossypium hirsutum
Gohir.A10G019800 Gossypium hirsutum
Gohir.D05G167300 Gossypium hirsutum
Gohir.D05G167400 Gossypium hirsutum
Gohir.D05G334900 Gossypium hirsutum
Gohir.D05G335200 Gossypium hirsutum
Gohir.D07G046900 Gossypium hirsutum
Gohir.D07G047000 Gossypium hirsutum
Gohir.D10G020600 Gossypium hirsutum
Gorai.001G050000 Gossypium raimondii
Gorai.001G050100 Gossypium raimondii
Gorai.009G172400 Gossypium raimondii
Gorai.009G172500 Gossypium raimondii
Gorai.009G358500 Gossypium raimondii
Gorai.011G021700 Gossypium raimondii
GSVIVG01000229001 Vitis vinifera
GSVIVG01005847001 Vitis vinifera
GSVIVG01005848001 Vitis vinifera
GSVIVG01017391001 Vitis vinifera
GSVIVG01017392001 Vitis vinifera
GSVIVG01017397001 Vitis vinifera
GSVIVG01017401001 Vitis vinifera
GSVIVG01017411001 Vitis vinifera
GSVIVG01017420001 Vitis vinifera
GSVIVG01017499001 Vitis vinifera
GSVIVG01017501001 Vitis vinifera
GSVIVG01023519001 Vitis vinifera
HanXRQChr05g0142611 Helianthus annuus
HanXRQChr09g0245671 Helianthus annuus
HanXRQChr16g0512911 Helianthus annuus
HanXRQChr16g0512921 Helianthus annuus
HanXRQChr16g0512951 Helianthus annuus
HanXRQChr16g0512961 Helianthus annuus
HanXRQChr17g0555731 Helianthus annuus
Haze_06554 Corylus avellana
Haze_06555 Corylus avellana
Haze_21275 Corylus avellana
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla
Hma1.2p1_1132F.1_g260120 Hydrangea macrophylla
HPP92_013220 Vanilla planifolia
HPP92_013258 Vanilla planifolia
HPP92_014496 Vanilla planifolia
Hund04580 Selenicereus undatus
Hund04581 Selenicereus undatus
Hund23633 Selenicereus undatus
Lalb_Chr01g0008161 Lupinus albus
Lalb_Chr15g0090061 Lupinus albus
Lalb_Chr19g0131941 Lupinus albus
Lalb_Chr20g0122221 Lupinus albus
Lj1A1211G82 Lonicera japonica
Lj1C977T5 Lonicera japonica
Lj3g0000692 Lotus japonicus
Lj3g0002076 Lotus japonicus
Lj6g0025655 Lotus japonicus
Lj6g0026396 Lotus japonicus
Lj8C45T15 Lonicera japonica
Lsat_1_v5_gn_1_90381 Lactuca sativa
Lsat_1_v5_gn_1_90421 Lactuca sativa
Lsat_1_v5_gn_2_128100 Lactuca sativa
Lsat_1_v5_gn_2_128161 Lactuca sativa
Lsat_1_v5_gn_2_128201 Lactuca sativa
Lsat_1_v5_gn_2_128281 Lactuca sativa
Lsat_1_v5_gn_2_128301 Lactuca sativa
Lsat_1_v5_gn_2_128341 Lactuca sativa
Lsat_1_v5_gn_2_128380 Lactuca sativa
Lsat_1_v5_gn_2_128480 Lactuca sativa
Lsat_1_v5_gn_2_128581 Lactuca sativa
Lsat_1_v5_gn_4_2241 Lactuca sativa
Lsat_1_v5_gn_4_57401 Lactuca sativa
Lsat_1_v5_gn_8_10020 Lactuca sativa
Lsat_1_v5_gn_9_51680 Lactuca sativa
Lsat_1_v5_gn_9_51700 Lactuca sativa
Lsat_1_v5_gn_9_51780 Lactuca sativa
Manes.14G037900 Manihot esculenta
Manes.16G022000 Manihot esculenta
Manes.16G022100 Manihot esculenta
Mapoly0002s0101 Marchantia polymorpha
Mapoly0005s0036 Marchantia polymorpha
MBI11_g00236_MAGBIO Magnolia biondii
MCO03G150 Micromonas commoda
MCO04G102 Micromonas commoda
MD01G1178400 Malus domestica
MD01G1179500 Malus domestica
MD01G1180100 Malus domestica
MD01G1180600 Malus domestica
MD05G1323900 Malus domestica
MD07G1250800 Malus domestica
MD07G1251000 Malus domestica
MD12G1074500 Malus domestica
Medtr2g012380 Medicago truncatula
Medtr2g012390 Medicago truncatula
Medtr2g012420 Medicago truncatula
Medtr4g029500 Medicago truncatula
Medtr4g050710 Medicago truncatula
Medtr4g050760 Medicago truncatula
MELO3C004714.2 Cucumis melo
MELO3C005482.2 Cucumis melo
MELO3C007314.2 Cucumis melo
Migut.F00503 Erythranthe guttata
Migut.F00504 Erythranthe guttata
Migut.M01197 Erythranthe guttata
MSTRG.15920 Avicennia marina
MSTRG.27209 Avicennia marina
MSTRG.27210 Avicennia marina
Nitab4.5_0000262g0070 Nicotiana tabacum
Nitab4.5_0001170g0200 Nicotiana tabacum
Nitab4.5_0003676g0090 Nicotiana tabacum
Nitab4.5_0017191g0010 Nicotiana tabacum
Nn1g00917 Nelumbo nucifera
Nn1g06719 Nelumbo nucifera
Nn6g33874 Nelumbo nucifera
Oeu021698.2 Olea europaea
Oeu028188.3 Olea europaea
Oeu053926.1 Olea europaea
Oeu053927.1 Olea europaea
Os02g0805600 Oryza sativa ssp. japonica
Os03g0101600 Oryza sativa ssp. japonica
Os06g0208151 Oryza sativa ssp. japonica
Os10g0561100 Oryza sativa ssp. japonica
Peaxi162Scf00304g01121 Petunia axillaris
Peaxi162Scf00304g01221 Petunia axillaris
Peaxi162Scf00527g00322 Petunia axillaris
PGR004G2268 Punica granatum
PGR042G0437 Punica granatum
PGSC0003DMG400021595 Solanum tuberosum
PGSC0003DMG400022418 Solanum tuberosum
Phvul.006G190900 Phaseolus vulgaris
Phvul.011G215000 Phaseolus vulgaris
Phvul.011G215100 Phaseolus vulgaris
Potri.001G140600 Populus trichocarpa
Potri.004G036100 Populus trichocarpa
Potri.004G233800 Populus trichocarpa
Pp3c10_4420 Physcomitrium patens
Pp3c12_2540 Physcomitrium patens
Pp3c24_17450 Physcomitrium patens
Pp3c3_23550 Physcomitrium patens
Pp3c3_23630 Physcomitrium patens
Pp3s155_50 Physcomitrium patens
PRCOL_00001443 Prasinoderma coloniale
PRCOL_00003975 Prasinoderma coloniale
Prupe.2G133300 Prunus persica
Prupe.2G274500 Prunus persica
Prupe.2G274600 Prunus persica
Prupe.4G038700 Prunus persica
Prupe.7G059000 Prunus persica
Prupe.7G059300 Prunus persica
Psat1g207880 Pisum sativum
Psat1g207920 Pisum sativum
Psat6g139280 Pisum sativum
Psat7g229120 Pisum sativum
PSO541G1752 Papaver somniferum
PSO675G0881 Papaver somniferum
PSO675G4247 Papaver somniferum
PSO675G8570 Papaver somniferum
PSO732G0088 Papaver somniferum
QL02p025510 Quercus lobata
QL02p025603 Quercus lobata
QL02p025615 Quercus lobata
QL02p025629 Quercus lobata
QL02p025639 Quercus lobata
QL05p081676 Quercus lobata
QL05p081681 Quercus lobata
RcHm_v2.0_Chr1g0318171 Rosa chinensis
RcHm_v2.0_Chr1g0363511 Rosa chinensis
RcHm_v2.0_Chr1g0373931 Rosa chinensis
RcHm_v2.0_Chr1g0373941 Rosa chinensis
RcHm_v2.0_Chr2g0162661 Rosa chinensis
RcHm_v2.0_Chr5g0003051 Rosa chinensis
RcHm_v2.0_Chr5g0003241 Rosa chinensis
RcHm_v2.0_Chr5g0003521 Rosa chinensis
RcHm_v2.0_Chr5g0003651 Rosa chinensis
RcHm_v2.0_Chr5g0006701 Rosa chinensis
RcHm_v2.0_Chr5g0006721 Rosa chinensis
RcHm_v2.0_Chr5g0006731 Rosa chinensis
RcHm_v2.0_Chr5g0030211 Rosa chinensis
RcHm_v2.0_Chr5g0030281 Rosa chinensis
RcHm_v2.0_Chr5g0030291 Rosa chinensis
RcHm_v2.0_Chr5g0030371 Rosa chinensis
RcHm_v2.0_Chr5g0030471 Rosa chinensis
Rhsim03G0164200 Rhododendron simsii
Rhsim03G0164300 Rhododendron simsii
Rhsim13G0174400 Rhododendron simsii
Rhsim13G0174500 Rhododendron simsii
Sabra01G0109400 Salix brachista
Sabra01G0178700 Salix brachista
Sabra04G0022000 Salix brachista
Sabra11G0030900 Salix brachista
SalBow3G1454 Salvia bowleyana
SalBow3G1776 Salvia bowleyana
SalBow8G3959 Salvia bowleyana
Sc17g0006490 Simmondsia chinensis
Sc19g0001740 Simmondsia chinensis
Sed0014396 Sechium edule
Sed0016189 Sechium edule
Sed0019244 Sechium edule
Sed0024517 Sechium edule
SEGI_07541 Sequoiadendron giganteum
SEGI_27377 Sequoiadendron giganteum
SEGI_40386 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00475 Striga asiatica
SGA_v2.0_scaffold1G00477 Striga asiatica
SGA_v2.0_scaffold1G00479 Striga asiatica
SGA_v2.0_scaffold7G03963 Striga asiatica
SMO169G0311 Selaginella moellendorffii
SMO202G0047 Selaginella moellendorffii
SMO367G0057 Selaginella moellendorffii
Solyc02g078940.3 Solanum lycopersicum
Solyc06g034120.4 Solanum lycopersicum
Sopen02g023750 Solanum pennellii
Sopen06g010780 Solanum pennellii
Sp2g24710 Schrenkiella parvula
Sp7g19720 Schrenkiella parvula
TAR059G0002 Trochodendron aralioides
TAR374G0526 Trochodendron aralioides
TAR374G1088 Trochodendron aralioides
TAR374G1123 Trochodendron aralioides
TAR375G0432 Trochodendron aralioides
TAR375G0989 Trochodendron aralioides
TAR375G1041 Trochodendron aralioides
TAR626G1284 Trochodendron aralioides
TAR626G1601 Trochodendron aralioides
THA.LOC104801582 Tarenaya hassleriana
THA.LOC104812957 Tarenaya hassleriana
Thecc.03G151500 Theobroma cacao
Thecc.06G196700 Theobroma cacao
Thecc.06G196800 Theobroma cacao
Thhalv10004575m.g Eutrema salsugineum
Thhalv10025712m.g Eutrema salsugineum
TPR.G5004 Trifolium pratense
TPR.G5645 Trifolium pratense
TWI14G0157 Tripterygium wilfordii
TWI23G1258 Tripterygium wilfordii
TWI63G0457 Tripterygium wilfordii
TWI63G1036 Tripterygium wilfordii
TWI79G0274 Tripterygium wilfordii
unitig_37.g12491 Utricularia gibba
unitig_748.g7573 Utricularia gibba
vmacro06821 Vaccinium macrocarpon
vmacro06822 Vaccinium macrocarpon
vmacro06823 Vaccinium macrocarpon
vmacro06824 Vaccinium macrocarpon
vmacro06825 Vaccinium macrocarpon
vmacro06969 Vaccinium macrocarpon
vmacro22278 Vaccinium macrocarpon
VMungo0540G2381 Vigna mungo
VMungo1127G0758 Vigna mungo
Zm00001eb000320 Zea mays
Zm00001eb191990 Zea mays
Zm00001eb258260 Zea mays
Zm00001eb307530 Zea mays
Zm00001eb339820 Zea mays

User provided reference genes

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