Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p32160 Brassica napus
A04p10890 Brassica napus
A06p18710 Brassica napus
Aa31LG4G17520 Aethionema arabicum
Aa31LG5G480 Aethionema arabicum
Aa31LG9G17420 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3772 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.984 Anthoceros agrestis
Actinidia17211 Actinidia chinensis
Actinidia31828 Actinidia chinensis
Actinidia33421 Actinidia chinensis
Actinidia35729 Actinidia chinensis
Ah.05g180650 Amaranthus hybridus
Ah.12g060130 Amaranthus hybridus
Ah.13g068870 Amaranthus hybridus
AL5G28560 Arabidopsis lyrata
AL6G52970 Arabidopsis lyrata
AL7G46550 Arabidopsis lyrata
Aqoxy3G04083 Aquilegia oxysepala
Aqoxy7G00329 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.009U6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EIL0XJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0RHH8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HQA8FP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PWMR1T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S4A3WS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TW0Q69 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UGR4NR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VFV8VC Arachis hypogaea
AT3G49050 Arabidopsis thaliana
AT4G00500 Arabidopsis thaliana
AT5G37710 Arabidopsis thaliana
ATR0564G240 Amborella trichopoda
ATR0680G112 Amborella trichopoda
Atru.chr1.1928 Acer truncatum
Atru.chr1.427 Acer truncatum
Atru.chr5.455 Acer truncatum
Atru.chr5.456 Acer truncatum
Atru.chr5.457 Acer truncatum
AUR62015958 Chenopodium quinoa
AUR62016251 Chenopodium quinoa
AUR62018214 Chenopodium quinoa
AUR62021164 Chenopodium quinoa
AUR62038704 Chenopodium quinoa
BcaB01g00759 Brassica carinata
BcaB01g02158 Brassica carinata
BcaB01g02161 Brassica carinata
BcaB02g10268 Brassica carinata
BcaB06g27125 Brassica carinata
BcaC01g06872 Brassica carinata
BcaC02g09606 Brassica carinata
BcaC04g24163 Brassica carinata
BcaC04g24165 Brassica carinata
BcaC07g39379 Brassica carinata
BolC3t16189H Brassica oleracea
BolC4t26037H Brassica oleracea
BolC8t50024H Brassica oleracea
BraA03t12386Z Brassica rapa
BraA04t16755Z Brassica rapa
BraA06t24954Z Brassica rapa
C03p39180 Brassica napus
C04p44640 Brassica napus
C08p24020 Brassica napus
CAN.G1175.6 Capsicum annuum
CAN.G222.29 Capsicum annuum
CAN.G733.1 Capsicum annuum
CAN.G78.66 Capsicum annuum
CANSAT21G0599 Cannabis sativa
CANSAT56G1933 Cannabis sativa
CANSAT64G0390 Cannabis sativa
CARHR157850 Cardamine hirsuta
CARHR215130 Cardamine hirsuta
CARHR248620 Cardamine hirsuta
Carub.0005s1523 Capsella rubella
Carub.0006s3676 Capsella rubella
Carub.0007s3287 Capsella rubella
Ca_10744_v3 Cicer arietinum L.
Ca_17102_v3 Cicer arietinum L.
Ca_23636_v3 Cicer arietinum L.
Ca_30888_v3 Cicer arietinum L.
CBR_g23955 Chara braunii
Cc02_g02760 Coffea canephora
Cc02_g37940 Coffea canephora
Cc07_g13430 Coffea canephora
Cc07_g13440 Coffea canephora
CDE02G1326 Ceratophyllum demersum
CDE04G0665 Ceratophyllum demersum
CDE05G1180 Ceratophyllum demersum
CDE06G2685 Ceratophyllum demersum
CDE11G0892 Ceratophyllum demersum
Cfa003934 Carpinus fangiana
Cfa007812 Carpinus fangiana
Cfa016255 Carpinus fangiana
Ciclev10004957m.g Citrus clementina
Ciclev10011712m.g Citrus clementina
Ciclev10020127m.g Citrus clementina
CiPaw.01G060700 Carya illinoinensis
CiPaw.02G030400 Carya illinoinensis
CiPaw.03G072000 Carya illinoinensis
CiPaw.06G002500 Carya illinoinensis
ClCG01G004500 Citrullus lanatus
ClCG05G011460 Citrullus lanatus
ClCG06G003780 Citrullus lanatus
COL.COLO4_03479 Corchorus olitorius
COL.COLO4_05991 Corchorus olitorius
COL.COLO4_12708 Corchorus olitorius
COL.COLO4_28050 Corchorus olitorius
COL.COLO4_34155 Corchorus olitorius
Cpa.g.sc107.70 Carica papaya
Cpa.g.sc1111.2 Carica papaya
Cpa.g.sc18.251 Carica papaya
CsaV3_3G020970 Cucumis sativus L.
CsaV3_5G004710 Cucumis sativus L.
CsaV3_6G000490 Cucumis sativus L.
CSS0003427 Camellia sinensis var. sinensis
CSS0014519 Camellia sinensis var. sinensis
CSS0016631 Camellia sinensis var. sinensis
CSS0023013 Camellia sinensis var. sinensis
CSS0046030 Camellia sinensis var. sinensis
CSS0048820 Camellia sinensis var. sinensis
CSS0049433 Camellia sinensis var. sinensis
DCAR_000390 Daucus carota
DCAR_006929 Daucus carota
DCAR_009375 Daucus carota
DCAR_011655 Daucus carota
DCAR_016687 Daucus carota
DCAR_016688 Daucus carota
DCAR_020256 Daucus carota
Dinv28202 Davidia involucrata
Dinv32475 Davidia involucrata
Dinv35223 Davidia involucrata
Duzib068G1300 Durio zibethinus
Duzib133G0878 Durio zibethinus
Duzib138G0508 Durio zibethinus
Duzib138G0781 Durio zibethinus
Duzib205G0823 Durio zibethinus
ECA232G2363 Erigeron canadensis
ECA232G2579 Erigeron canadensis
ECA238G2332 Erigeron canadensis
EL10Ac1g00423 Beta vulgaris
EL10Ac1g00987 Beta vulgaris
EL10Ac2g03174 Beta vulgaris
EL10Ac3g05608 Beta vulgaris
Eucgr.A02773 Eucalyptus grandis
Eucgr.C00372 Eucalyptus grandis
Eucgr.E00140 Eucalyptus grandis
Eucgr.F02854 Eucalyptus grandis
Eucgr.F02855 Eucalyptus grandis
Eucgr.F02857 Eucalyptus grandis
Eucgr.F02858 Eucalyptus grandis
FAN01G1634 Fragaria x ananassa
FAN01G2971 Fragaria x ananassa
FAN03G0075 Fragaria x ananassa
FAN03G3364 Fragaria x ananassa
FAN03G3514 Fragaria x ananassa
FAN06G0638 Fragaria x ananassa
FAN06G3006 Fragaria x ananassa
FAN06G4061 Fragaria x ananassa
FAN06G4958 Fragaria x ananassa
FAN10G2152 Fragaria x ananassa
FAN10G2958 Fragaria x ananassa
FAN10G4212 Fragaria x ananassa
FAN19G0105 Fragaria x ananassa
FAN23G0274 Fragaria x ananassa
FAN26G3007 Fragaria x ananassa
FAN28G2484 Fragaria x ananassa
FvH4_1g30350 Fragaria vesca
FvH4_7g14200 Fragaria vesca
FvH4_7g29770 Fragaria vesca
Glyma.03G009700 Glycine max
Glyma.07G071100 Glycine max
Glyma.09G136700 Glycine max
Glyma.10G233700 Glycine max
Glyma.11G216100 Glycine max
Glyma.16G182100 Glycine max
Glyma.18G040500 Glycine max
Gohir.A07G177100 Gossypium hirsutum
Gohir.A08G131100 Gossypium hirsutum
Gohir.A09G041300 Gossypium hirsutum
Gohir.A12G256500 Gossypium hirsutum
Gohir.D07G182300 Gossypium hirsutum
Gohir.D08G152600 Gossypium hirsutum
Gohir.D09G042100 Gossypium hirsutum
Gohir.D12G257800 Gossypium hirsutum
Gorai.001G204800 Gossypium raimondii
Gorai.004G158500 Gossypium raimondii
Gorai.006G048400 Gossypium raimondii
Gorai.008G276100 Gossypium raimondii
GSVIVG01026919001 Vitis vinifera
GSVIVG01028916001 Vitis vinifera
GSVIVG01030786001 Vitis vinifera
HanXRQChr09g0253481 Helianthus annuus
HanXRQChr09g0258891 Helianthus annuus
HanXRQChr12g0368911 Helianthus annuus
Haze_00008 Corylus avellana
Haze_14255 Corylus avellana
Haze_14263 Corylus avellana
Haze_15495 Corylus avellana
Hma1.2p1_0001F.1_g001450 Hydrangea macrophylla
Hma1.2p1_0158F.1_g070170 Hydrangea macrophylla
Hma1.2p1_0227F.1_g095820 Hydrangea macrophylla
HPP92_001474 Vanilla planifolia
HPP92_001475 Vanilla planifolia
HPP92_001478 Vanilla planifolia
HPP92_001479 Vanilla planifolia
HPP92_008006 Vanilla planifolia
HPP92_022762 Vanilla planifolia
HPP92_024825 Vanilla planifolia
Hund04766 Selenicereus undatus
Hund13107 Selenicereus undatus
Hund15537 Selenicereus undatus
Hund27281 Selenicereus undatus
Hund29820 Selenicereus undatus
Lalb_Chr02g0141131 Lupinus albus
Lalb_Chr03g0034701 Lupinus albus
Lalb_Chr04g0256931 Lupinus albus
Lalb_Chr19g0130751 Lupinus albus
Lalb_Chr20g0116961 Lupinus albus
Lj1A1000T79 Lonicera japonica
Lj2A521G73 Lonicera japonica
Lj2A521T72 Lonicera japonica
Lj2A521T74 Lonicera japonica
Lj2A523G86 Lonicera japonica
Lj2A523T89 Lonicera japonica
Lj2g0020459 Lotus japonicus
Lj3g0003218 Lotus japonicus
Lj4A263T81 Lonicera japonica
Lj5g0012755 Lotus japonicus
Lj6g0018883 Lotus japonicus
Lj7A513T105 Lonicera japonica
Lj8A22T71 Lonicera japonica
Lju891A3T20 Lonicera japonica
Lsat_1_v5_gn_3_65121 Lactuca sativa
Lsat_1_v5_gn_7_4520 Lactuca sativa
Lsat_1_v5_gn_8_115481 Lactuca sativa
Lsat_1_v5_gn_9_55100 Lactuca sativa
Manes.01G118600 Manihot esculenta
Manes.01G257400 Manihot esculenta
Manes.02G077000 Manihot esculenta
Manes.06G149400 Manihot esculenta
Mapoly0175s0006 Marchantia polymorpha
MBI17_g40128_MAGBIO Magnolia biondii
MBI18_g21559_MAGBIO Magnolia biondii
MBI19_g34825_MAGBIO Magnolia biondii
MD00G1116700 Malus domestica
MD01G1059200 Malus domestica
MD01G1204700 Malus domestica
MD07G1273200 Malus domestica
MD09G1275900 Malus domestica
Medtr1g100950 Medicago truncatula
Medtr3g065480 Medicago truncatula
Medtr8g030890 Medicago truncatula
MELO3C005477.2 Cucumis melo
MELO3C020223.2 Cucumis melo
MELO3C021215.2 Cucumis melo
Migut.B01747 Erythranthe guttata
Migut.F00328 Erythranthe guttata
Migut.F01107 Erythranthe guttata
Migut.H02260 Erythranthe guttata
Migut.K00902 Erythranthe guttata
Migut.L00976 Erythranthe guttata
MSTRG.20827 Avicennia marina
MSTRG.3714 Avicennia marina
MSTRG.8465 Avicennia marina
Nitab4.5_0000084g0050 Nicotiana tabacum
Nitab4.5_0000201g0190 Nicotiana tabacum
Nitab4.5_0004439g0150 Nicotiana tabacum
Nitab4.5_0004679g0090 Nicotiana tabacum
Nitab4.5_0005277g0070 Nicotiana tabacum
Nitab4.5_0007567g0010 Nicotiana tabacum
Nitab4.5_0010112g0030 Nicotiana tabacum
Nitab4.5_0021050g0010 Nicotiana tabacum
Nn1g01523 Nelumbo nucifera
Nn3g18306 Nelumbo nucifera
Nn4g24275 Nelumbo nucifera
Nn6g33435 Nelumbo nucifera
Oeu002128.1 Olea europaea
Oeu004103.2 Olea europaea
Oeu004498.1 Olea europaea
Oeu012253.1 Olea europaea
Oeu028433.1 Olea europaea
Oeu032323.1 Olea europaea
Oeu037303.1 Olea europaea
Oeu061938.1 Olea europaea
Os03g0712000 Oryza sativa ssp. japonica
Os06g0256300 Oryza sativa ssp. japonica
Os07g0481200 Oryza sativa ssp. japonica
Os09g0569300 Oryza sativa ssp. japonica
Peaxi162Scf00020g00232 Petunia axillaris
Peaxi162Scf00305g00521 Petunia axillaris
Peaxi162Scf00444g00439 Petunia axillaris
Peaxi162Scf01350g00020 Petunia axillaris
PGR004G1750 Punica granatum
PGR042G0090 Punica granatum
PGR042G0954 Punica granatum
PGSC0003DMG400000038 Solanum tuberosum
PGSC0003DMG400014604 Solanum tuberosum
PGSC0003DMG400015670 Solanum tuberosum
PGSC0003DMG400015787 Solanum tuberosum
Phvul.001G230100 Phaseolus vulgaris
Phvul.004G113800 Phaseolus vulgaris
Phvul.010G098300 Phaseolus vulgaris
Potri.002G159200 Populus trichocarpa
Potri.004G086900 Populus trichocarpa
Potri.012G142700 Populus trichocarpa
Potri.014G083600 Populus trichocarpa
Potri.015G145900 Populus trichocarpa
Potri.017G130000 Populus trichocarpa
Pp3c20_5230 Physcomitrium patens
Pp3c20_5490 Physcomitrium patens
Pp3c23_4180 Physcomitrium patens
Prupe.2G169800 Prunus persica
Prupe.2G296900 Prunus persica
Prupe.3G016400 Prunus persica
Psat2g045440 Pisum sativum
Psat4g154720 Pisum sativum
Psat5g121160 Pisum sativum
Psat6g197320 Pisum sativum
PSO017G3668 Papaver somniferum
PSO478G1637 Papaver somniferum
PSO478G4005 Papaver somniferum
PSO782G0162 Papaver somniferum
PSO782G0934 Papaver somniferum
QL02p058158 Quercus lobata
QL08p048917 Quercus lobata
RcHm_v2.0_Chr1g0355131 Rosa chinensis
RcHm_v2.0_Chr1g0377761 Rosa chinensis
RcHm_v2.0_Chr3g0490261 Rosa chinensis
RcHm_v2.0_Chr4g0403531 Rosa chinensis
Rhsim03G0150000 Rhododendron simsii
Rhsim07G0015800 Rhododendron simsii
Rhsim08G0018600 Rhododendron simsii
Rhsim09G0198800 Rhododendron simsii
Rhsim10G0177400 Rhododendron simsii
Sabra02G0126400 Salix brachista
Sabra04G0057700 Salix brachista
Sabra12G0107400 Salix brachista
Sabra17G0108200 Salix brachista
SalBow3G2978 Salvia bowleyana
SalBow4G3297 Salvia bowleyana
SalBow5G3804 Salvia bowleyana
SalBow5G4507 Salvia bowleyana
Sc01g0003400 Simmondsia chinensis
Sc10g0004780 Simmondsia chinensis
Sc19g0001420 Simmondsia chinensis
Sed0006949 Sechium edule
Sed0007628 Sechium edule
Sed0009141 Sechium edule
Sed0023363 Sechium edule
SEGI_00247 Sequoiadendron giganteum
SEGI_17602 Sequoiadendron giganteum
SEGI_22822 Sequoiadendron giganteum
SEGI_36460 Sequoiadendron giganteum
SEGI_39578 Sequoiadendron giganteum
SGA_v2.0_scaffold2G00938 Striga asiatica
SGA_v2.0_scaffold45G17180 Striga asiatica
SGA_v2.0_scaffold4G02330 Striga asiatica
SGA_v2.0_scaffold60G21064 Striga asiatica
SGA_v2.0_scaffold60G21070 Striga asiatica
SMO141G0066 Selaginella moellendorffii
SMO351G0044 Selaginella moellendorffii
SMO351G0204 Selaginella moellendorffii
Solyc01g094570.3 Solanum lycopersicum
Solyc03g025510.3 Solanum lycopersicum
Solyc05g051280.3 Solanum lycopersicum
Solyc11g011120.2 Solanum lycopersicum
Sopen01g038380 Solanum pennellii
Sopen03g004350 Solanum pennellii
Sopen05g029660 Solanum pennellii
Sopen11g005880 Solanum pennellii
Sp5g13030 Schrenkiella parvula
Sp6g00540 Schrenkiella parvula
Sp7g04350 Schrenkiella parvula
TAR371G1164 Trochodendron aralioides
TAR374G1326 Trochodendron aralioides
TAR374G1490 Trochodendron aralioides
TAR375G0748 Trochodendron aralioides
TAR375G0841 Trochodendron aralioides
TAR375G0863 Trochodendron aralioides
TAR622G0179 Trochodendron aralioides
TAR622G0332 Trochodendron aralioides
TAR629G1756 Trochodendron aralioides
THA.LOC104801445 Tarenaya hassleriana
THA.LOC104821390 Tarenaya hassleriana
THA.LOC104822315 Tarenaya hassleriana
Thecc.01G359800 Theobroma cacao
Thecc.03G179400 Theobroma cacao
Thecc.04G114400 Theobroma cacao
Thhalv10011150m.g Eutrema salsugineum
Thhalv10027768m.g Eutrema salsugineum
Thhalv10028646m.g Eutrema salsugineum
TPR.G23022 Trifolium pratense
TPR.G26970 Trifolium pratense
TWI14G0014 Tripterygium wilfordii
TWI14G0959 Tripterygium wilfordii
TWI59G0874 Tripterygium wilfordii
TWI77G0473 Tripterygium wilfordii
unitig_0.g1267 Utricularia gibba
unitig_0.g2647 Utricularia gibba
vmacro07696 Vaccinium macrocarpon
vmacro09829 Vaccinium macrocarpon
vmacro13282 Vaccinium macrocarpon
vmacro18534 Vaccinium macrocarpon
vmacro20944 Vaccinium macrocarpon
vmacro23202 Vaccinium macrocarpon
VMungo0331G0346 Vigna mungo
VMungo0331G0497 Vigna mungo
VMungo0464G1586 Vigna mungo
VMungo1309G2892 Vigna mungo
VMungo1383G1678 Vigna mungo
Zm00001eb095920 Zea mays
Zm00001eb280760 Zea mays
Zm00001eb321420 Zea mays

User provided reference genes

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