Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02120 Brassica napus
A03p06150 Brassica napus
A06p16400 Brassica napus
A06p16420 Brassica napus
A07p41650 Brassica napus
Aa31LG4G6210 Aethionema arabicum
Aa31LG5G16620 Aethionema arabicum
Aa31LG7G4680 Aethionema arabicum
Aa31LG7G4690 Aethionema arabicum
Aa31LG9G6280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1651 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1680 Anthoceros agrestis
Actinidia12363 Actinidia chinensis
Actinidia14983 Actinidia chinensis
Actinidia14984 Actinidia chinensis
Actinidia15463 Actinidia chinensis
Actinidia18035 Actinidia chinensis
Actinidia19407 Actinidia chinensis
Actinidia20531 Actinidia chinensis
Actinidia21543 Actinidia chinensis
Actinidia39229 Actinidia chinensis
Ah.00g000620 Amaranthus hybridus
Ah.11g040190 Amaranthus hybridus
AL1G33160 Arabidopsis lyrata
AL2G36130 Arabidopsis lyrata
AL6G24320 Arabidopsis lyrata
Aqoxy1G00258 Aquilegia oxysepala
Aqoxy5G01094 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5H33RN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8BL5SS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PSG53D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SDL2CG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZH6VX0 Arachis hypogaea
AT1G20330 Arabidopsis thaliana
AT1G76090 Arabidopsis thaliana
AT5G13710 Arabidopsis thaliana
ATR0332G035 Amborella trichopoda
ATR0332G047 Amborella trichopoda
ATR0332G077 Amborella trichopoda
ATR0661G069 Amborella trichopoda
Atru.chr1.1082 Acer truncatum
Atru.chr11.2584 Acer truncatum
Atru.chr13.214 Acer truncatum
AUR62009400 Chenopodium quinoa
AUR62013876 Chenopodium quinoa
AUR62023083 Chenopodium quinoa
AUR62031173 Chenopodium quinoa
AUR62036590 Chenopodium quinoa
AUR62036718 Chenopodium quinoa
BcaB01g05340 Brassica carinata
BcaB05g24969 Brassica carinata
BcaB07g32037 Brassica carinata
BcaC03g15645 Brassica carinata
BcaC04g24264 Brassica carinata
BcaC05g25936 Brassica carinata
BcaC05g25937 Brassica carinata
BcaC05g25938 Brassica carinata
BcaC05g25939 Brassica carinata
BcaC08g47101 Brassica carinata
BcaC08g47293 Brassica carinata
BcaNung04191 Brassica carinata
BolC2t06580H Brassica oleracea
BolC2t09358H Brassica oleracea
BolC3t13215H Brassica oleracea
BolC3t13216H Brassica oleracea
BolC5t30589H Brassica oleracea
BolC5t30590H Brassica oleracea
BolC6t40042H Brassica oleracea
BraA02t05184Z Brassica rapa
BraA03t09947Z Brassica rapa
BraA03t09948Z Brassica rapa
BraA06t24745Z Brassica rapa
BraA06t24746Z Brassica rapa
BraA07t31694Z Brassica rapa
C02p06370 Brassica napus
C02p33440 Brassica napus
C02p33450 Brassica napus
C03p07160 Brassica napus
C05p18900 Brassica napus
C05p18910 Brassica napus
C06p50030 Brassica napus
CAN.G128.10 Capsicum annuum
CAN.G1489.25 Capsicum annuum
CAN.G219.54 Capsicum annuum
CAN.G588.104 Capsicum annuum
CANSAT25G1697 Cannabis sativa
CANSAT80G0784 Cannabis sativa
CARHR020800 Cardamine hirsuta
CARHR069630 Cardamine hirsuta
CARHR199730 Cardamine hirsuta
Carub.0002s2298 Capsella rubella
Carub.0006s1189 Capsella rubella
Ca_14185_v3 Cicer arietinum L.
Ca_14485_v3 Cicer arietinum L.
Ca_15465_v3 Cicer arietinum L.
CBR_g10856 Chara braunii
CBR_g39173 Chara braunii
Cc02_g28350 Coffea canephora
Cc09_g10360 Coffea canephora
CDE02G2140 Ceratophyllum demersum
CDE05G0501 Ceratophyllum demersum
CDE05G3154 Ceratophyllum demersum
CDE05G3465 Ceratophyllum demersum
CDE09G0988 Ceratophyllum demersum
Cfa026157 Carpinus fangiana
Ciclev10001625m.g Citrus clementina
Ciclev10031748m.g Citrus clementina
CiPaw.07G143400 Carya illinoinensis
CiPaw.08G069400 Carya illinoinensis
CiPaw.13G007200 Carya illinoinensis
CiPaw.14G001900 Carya illinoinensis
ClCG05G015400 Citrullus lanatus
ClCG10G012230 Citrullus lanatus
ClCG10G012240 Citrullus lanatus
COL.COLO4_04874 Corchorus olitorius
COL.COLO4_26081 Corchorus olitorius
COL.COLO4_28253 Corchorus olitorius
COL.COLO4_28257 Corchorus olitorius
Cpa.g.sc125.30 Carica papaya
Cpa.g.sc26.259 Carica papaya
Cre12.g500500 Chlamydomonas reinhardtii
CsaV3_3G032010 Cucumis sativus L.
CsaV3_3G032020 Cucumis sativus L.
CsaV3_3G046140 Cucumis sativus L.
CSS0000323 Camellia sinensis var. sinensis
CSS0001823 Camellia sinensis var. sinensis
CSS0002789 Camellia sinensis var. sinensis
CSS0040313 Camellia sinensis var. sinensis
DCAR_022380 Daucus carota
DCAR_022423 Daucus carota
DCAR_022424 Daucus carota
DCAR_022425 Daucus carota
Dinv09326 Davidia involucrata
Dinv11013 Davidia involucrata
Dinv14130 Davidia involucrata
Dinv31895 Davidia involucrata
Dinv41913 Davidia involucrata
Duzib041G0521 Durio zibethinus
Duzib093G1294 Durio zibethinus
Duzib116G0944 Durio zibethinus
Duzib133G1041 Durio zibethinus
Duzib138G0178 Durio zibethinus
Duzib150G1431 Durio zibethinus
ECA233G0643 Erigeron canadensis
ECA233G4544 Erigeron canadensis
ECA234G3998 Erigeron canadensis
ECA246G1704 Erigeron canadensis
EL10Ac1g02080 Beta vulgaris
EL10Ac2g04347 Beta vulgaris
EL10Ac2g04773 Beta vulgaris
Eucgr.G03316 Eucalyptus grandis
Eucgr.G03330 Eucalyptus grandis
Eucgr.G03363 Eucalyptus grandis
Eucgr.G03364 Eucalyptus grandis
FAN01G2128 Fragaria x ananassa
FAN03G0911 Fragaria x ananassa
FAN06G1492 Fragaria x ananassa
FAN10G1771 Fragaria x ananassa
FAN15G3356 Fragaria x ananassa
FAN20G2697 Fragaria x ananassa
FAN27G0379 Fragaria x ananassa
FvH4_2g37920 Fragaria vesca
FvH4_7g01390 Fragaria vesca
Glyma.04G020600 Glycine max
Glyma.06G020700 Glycine max
Glyma.10G090500 Glycine max
Glyma.12G009200 Glycine max
Glyma.12G009300 Glycine max
Glyma.15G276300 Glycine max
Gohir.A05G182600 Gossypium hirsutum
Gohir.A05G255600 Gossypium hirsutum
Gohir.A08G054900 Gossypium hirsutum
Gohir.D05G185600 Gossypium hirsutum
Gohir.D05G257100 Gossypium hirsutum
Gohir.D08G064400 Gossypium hirsutum
Gorai.004G066700 Gossypium raimondii
Gorai.009G191000 Gossypium raimondii
Gorai.009G268600 Gossypium raimondii
GSVIVG01008737001 Vitis vinifera
GSVIVG01023969001 Vitis vinifera
GSVIVG01027561001 Vitis vinifera
GSVIVG01032155001 Vitis vinifera
GSVIVG01033285001 Vitis vinifera
HanXRQChr02g0056991 Helianthus annuus
HanXRQChr11g0343211 Helianthus annuus
HanXRQChr15g0477891 Helianthus annuus
HanXRQChr16g0524821 Helianthus annuus
HanXRQChr17g0544161 Helianthus annuus
HanXRQChr17g0563031 Helianthus annuus
Haze_03160 Corylus avellana
Haze_03171 Corylus avellana
Haze_22712 Corylus avellana
Hma1.2p1_0032F.1_g019130 Hydrangea macrophylla
Hma1.2p1_0163F.1_g072750 Hydrangea macrophylla
Hma1.2p1_1328F.1_g275930 Hydrangea macrophylla
Hma1.2p1_1328F.1_g275940 Hydrangea macrophylla
Hma1.2p1_1598F.1_g292980 Hydrangea macrophylla
Hma1.2p1_1598F.1_g292983 Hydrangea macrophylla
Hma1.2p1_1598F.1_g292986 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293000 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293009 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293010 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293016 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293019 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293020 Hydrangea macrophylla
Hma1.2p1_1598F.1_g293030 Hydrangea macrophylla
HPP92_014431 Vanilla planifolia
HPP92_021077 Vanilla planifolia
HPP92_023572 Vanilla planifolia
Hund08393 Selenicereus undatus
Lalb_Chr08g0246311 Lupinus albus
Lalb_Chr11g0061751 Lupinus albus
Lalb_Chr20g0107911 Lupinus albus
Lalb_Chr23g0265981 Lupinus albus
Lalb_Chr25g0282831 Lupinus albus
Lj1g0025110 Lotus japonicus
Lj3g0001696 Lotus japonicus
Lj3g0004407 Lotus japonicus
Lj3g0026980 Lotus japonicus
Lj5P176T22 Lonicera japonica
Lj9A400T60 Lonicera japonica
Lj9C638G10 Lonicera japonica
Lsat_1_v5_gn_1_105621 Lactuca sativa
Lsat_1_v5_gn_3_47540 Lactuca sativa
Lsat_1_v5_gn_4_31180 Lactuca sativa
Lsat_1_v5_gn_8_122660 Lactuca sativa
Manes.05G142300 Manihot esculenta
Manes.07G007800 Manihot esculenta
Manes.08G051000 Manihot esculenta
Manes.10G139400 Manihot esculenta
Manes.11G099000 Manihot esculenta
Manes.18G009200 Manihot esculenta
Mapoly0022s0086 Marchantia polymorpha
Mapoly0284s0002 Marchantia polymorpha
MBI02_g23137_MAGBIO Magnolia biondii
MBI04_g17677_MAGBIO Magnolia biondii
MBI05_g03214_MAGBIO Magnolia biondii
MCO07G040 Micromonas commoda
MCO11G703 Micromonas commoda
MD02G1307400 Malus domestica
MD07G1018200 Malus domestica
MD08G1007400 Malus domestica
MD15G1006600 Malus domestica
Medtr3g032530 Medicago truncatula
Medtr3g114780 Medicago truncatula
Medtr7g012060 Medicago truncatula
MELO3C003726.2 Cucumis melo
MELO3C023989.2 Cucumis melo
MELO3C023990.2 Cucumis melo
MELO3C030747.2 Cucumis melo
Migut.B00053 Erythranthe guttata
Migut.B01280 Erythranthe guttata
Migut.N01335 Erythranthe guttata
MSTRG.16933 Avicennia marina
MSTRG.20568 Avicennia marina
Nitab4.5_0000079g0210 Nicotiana tabacum
Nitab4.5_0000707g0230 Nicotiana tabacum
Nitab4.5_0001509g0020 Nicotiana tabacum
Nitab4.5_0002196g0070 Nicotiana tabacum
Nitab4.5_0002645g0030 Nicotiana tabacum
Nitab4.5_0004557g0030 Nicotiana tabacum
Nitab4.5_0004587g0050 Nicotiana tabacum
Nitab4.5_0004867g0060 Nicotiana tabacum
Nitab4.5_0006340g0030 Nicotiana tabacum
Nitab4.5_0007759g0010 Nicotiana tabacum
Nitab4.5_0008805g0020 Nicotiana tabacum
Nitab4.5_0011832g0010 Nicotiana tabacum
Nn2g15264 Nelumbo nucifera
Nn5g30852 Nelumbo nucifera
Nn7g36263 Nelumbo nucifera
Oeu029005.1 Olea europaea
Oeu029006.1 Olea europaea
Oeu036568.1 Olea europaea
Oeu045098.1 Olea europaea
Oeu049488.1 Olea europaea
Oeu049489.1 Olea europaea
Os03g0136200 Oryza sativa ssp. japonica
Os03g0807600 Oryza sativa ssp. japonica
Os07g0206700 Oryza sativa ssp. japonica
Os11g0296900 Oryza sativa ssp. japonica
Peaxi162Scf00019g00016 Petunia axillaris
Peaxi162Scf00042g00123 Petunia axillaris
Peaxi162Scf00354g00224 Petunia axillaris
Peaxi162Scf00362g00046 Petunia axillaris
PGR031G0628 Punica granatum
PGR031G0891 Punica granatum
PGR042G3017 Punica granatum
PGSC0003DMG400006855 Solanum tuberosum
PGSC0003DMG400018641 Solanum tuberosum
PGSC0003DMG400018937 Solanum tuberosum
PGSC0003DMG400043233 Solanum tuberosum
Phvul.005G023700 Phaseolus vulgaris
Phvul.009G020000 Phaseolus vulgaris
Phvul.011G011800 Phaseolus vulgaris
Phvul.011G011900 Phaseolus vulgaris
Potri.001G263700 Populus trichocarpa
Potri.002G016300 Populus trichocarpa
Potri.005G245800 Populus trichocarpa
Potri.009G058600 Populus trichocarpa
Potri.016G056000 Populus trichocarpa
Pp3c12_350 Physcomitrium patens
Pp3c14_10470 Physcomitrium patens
Pp3c17_1140 Physcomitrium patens
Pp3c17_1680 Physcomitrium patens
PRCOL_00005003 Prasinoderma coloniale
PRCOL_00006704 Prasinoderma coloniale
Prupe.1G359200 Prunus persica
Prupe.2G019200 Prunus persica
Psat5g011680 Pisum sativum
Psat5g210200 Pisum sativum
PSO170G5393 Papaver somniferum
PSO210G3275 Papaver somniferum
PSO210G3330 Papaver somniferum
PSO339G0058 Papaver somniferum
PSO384G2229 Papaver somniferum
PSO541G4642 Papaver somniferum
PSO675G2162 Papaver somniferum
QL02p012967 Quercus lobata
QL04p008841 Quercus lobata
QL07p000219 Quercus lobata
QL11p053824 Quercus lobata
RcHm_v2.0_Chr1g0317111 Rosa chinensis
RcHm_v2.0_Chr3g0482121 Rosa chinensis
RcHm_v2.0_Chr3g0482141 Rosa chinensis
RcHm_v2.0_Chr4g0386051 Rosa chinensis
RcHm_v2.0_Chr6g0303691 Rosa chinensis
Rhsim01G0141000 Rhododendron simsii
Rhsim03G0258600 Rhododendron simsii
Rhsim05G0164000 Rhododendron simsii
Rhsim05G0184200 Rhododendron simsii
Rhsim05G0184300 Rhododendron simsii
Rhsim06G0012100 Rhododendron simsii
Rhsim07G0057300 Rhododendron simsii
Rhsim07G0057400 Rhododendron simsii
Rhsim07G0057500 Rhododendron simsii
RhsimUnG0121400 Rhododendron simsii
RhsimUnG0121500 Rhododendron simsii
RhsimUnG0121700 Rhododendron simsii
RhsimUnG0121800 Rhododendron simsii
Sabra02G0013100 Salix brachista
Sabra05G0189900 Salix brachista
Sabra09G0043000 Salix brachista
Sabra16G0161900 Salix brachista
SalBow1G2146 Salvia bowleyana
Sc02g0008850 Simmondsia chinensis
Sc02g0008890 Simmondsia chinensis
Sc10g0000200 Simmondsia chinensis
Sed0009367 Sechium edule
Sed0009889 Sechium edule
Sed0019833 Sechium edule
Sed0023779 Sechium edule
SEGI_06554 Sequoiadendron giganteum
SEGI_07428 Sequoiadendron giganteum
SEGI_07694 Sequoiadendron giganteum
SEGI_27559 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32749 Striga asiatica
SGA_v2.0_scaffold32G13309 Striga asiatica
SGA_v2.0_scaffold4G02505 Striga asiatica
SHI08022 Sapria himalayana
SHI31197 Sapria himalayana
SMO119G0140 Selaginella moellendorffii
SMO139G0026 Selaginella moellendorffii
Solyc01g087560.3 Solanum lycopersicum
Solyc01g111830.3 Solanum lycopersicum
Solyc05g008680.2 Solanum lycopersicum
Solyc10g055680.1 Solanum lycopersicum
Solyc10g080150.2 Solanum lycopersicum
Sopen01g034530 Solanum pennellii
Sopen01g053880 Solanum pennellii
Sopen05g004500 Solanum pennellii
Sopen10g025470 Solanum pennellii
Sopen10g030760 Solanum pennellii
Sp1g18050 Schrenkiella parvula
Sp5g31210 Schrenkiella parvula
Sp6g30310 Schrenkiella parvula
TAR369G0519 Trochodendron aralioides
TAR376G1086 Trochodendron aralioides
TAR628G0268 Trochodendron aralioides
TAR633G1865 Trochodendron aralioides
THA.LOC104809656 Tarenaya hassleriana
THA.LOC104809850 Tarenaya hassleriana
THA.LOC104811446 Tarenaya hassleriana
THA.LOC104813772 Tarenaya hassleriana
THA.LOC104819086 Tarenaya hassleriana
THA.LOC104819087 Tarenaya hassleriana
Thecc.01G407900 Theobroma cacao
Thecc.01G408000 Theobroma cacao
Thecc.01G408100 Theobroma cacao
Thecc.05G156300 Theobroma cacao
Thecc.08G052000 Theobroma cacao
Thhalv10008036m.g Eutrema salsugineum
Thhalv10014014m.g Eutrema salsugineum
Thhalv10018759m.g Eutrema salsugineum
TPR.G3813 Trifolium pratense
TPR.G38220 Trifolium pratense
TPR.G40018 Trifolium pratense
TWI09G1006 Tripterygium wilfordii
TWI12G1103 Tripterygium wilfordii
TWI36G0158 Tripterygium wilfordii
TWI53G1786 Tripterygium wilfordii
TWI56G0543 Tripterygium wilfordii
vmacro13385 Vaccinium macrocarpon
vmacro13686 Vaccinium macrocarpon
vmacro20091 Vaccinium macrocarpon
VMungo0647G0452 Vigna mungo
VMungo1080G0569 Vigna mungo
VMungo1127G0051 Vigna mungo
VMungo1127G0498 Vigna mungo
VMungo1309G1114 Vigna mungo
Zm00001eb002850 Zea mays
Zm00001eb212480 Zea mays
Zm00001eb212500 Zea mays
Zm00001eb303010 Zea mays
Zm00001eb372580 Zea mays

User provided reference genes

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