Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p24750 Brassica napus
A09p19500 Brassica napus
Aa31LG2G12220 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2724 Anthoceros agrestis
Actinidia05842 Actinidia chinensis
Actinidia10786 Actinidia chinensis
Actinidia24778 Actinidia chinensis
Actinidia25682 Actinidia chinensis
Actinidia31713 Actinidia chinensis
Ah.04g162410 Amaranthus hybridus
Ah.14g083000 Amaranthus hybridus
Ah.15g095040 Amaranthus hybridus
AL1G64970 Arabidopsis lyrata
AL4G43270 Arabidopsis lyrata
Aqoxy1G00153 Aquilegia oxysepala
Aqoxy1G00154 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.029YZL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.42MJWH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A3V5PU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KT77F2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M3EH65 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NT6F81 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XIVB9A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y7X7J4 Arachis hypogaea
AT1G54530 Arabidopsis thaliana
AT2G44310 Arabidopsis thaliana
ATR0598G207 Amborella trichopoda
ATR0598G352 Amborella trichopoda
Atru.chr10.1720 Acer truncatum
Atru.chr11.2710 Acer truncatum
Atru.chr2.729 Acer truncatum
Atru.chr8.904 Acer truncatum
AUR62000976 Chenopodium quinoa
AUR62000977 Chenopodium quinoa
AUR62001423 Chenopodium quinoa
AUR62004988 Chenopodium quinoa
AUR62009947 Chenopodium quinoa
AUR62015099 Chenopodium quinoa
AUR62017560 Chenopodium quinoa
BcaB01g03320 Brassica carinata
BcaB07g31090 Brassica carinata
BcaB07g31092 Brassica carinata
BcaC01g05176 Brassica carinata
BcaC04g22011 Brassica carinata
BcaNung05778 Brassica carinata
BolC3t15301H Brassica oleracea
BolC9t55378H Brassica oleracea
BraA03t11682Z Brassica rapa
BraA09t37565Z Brassica rapa
C03p29520 Brassica napus
C09p24830 Brassica napus
CAN.G129.51 Capsicum annuum
CAN.G404.64 Capsicum annuum
CANSAT21G0080 Cannabis sativa
CANSAT21G0498 Cannabis sativa
CANSAT25G0944 Cannabis sativa
CANSAT56G3100 Cannabis sativa
CANSAT64G1987 Cannabis sativa
CARHR055620 Cardamine hirsuta
CARHR139480 Cardamine hirsuta
Carub.0002s0912 Capsella rubella
Carub.0004s2690 Capsella rubella
Ca_07288_v3 Cicer arietinum L.
Ca_10055_v3 Cicer arietinum L.
Ca_11281_v3 Cicer arietinum L.
Ca_30667_v3 Cicer arietinum L.
CBR_g17696 Chara braunii
CBR_g4489 Chara braunii
CBR_g4493 Chara braunii
Cc02_g26870 Coffea canephora
Cc02_g31630 Coffea canephora
CDE04G1770 Ceratophyllum demersum
CDE04G1793 Ceratophyllum demersum
CDE04G2103 Ceratophyllum demersum
CDE04G2632 Ceratophyllum demersum
CDE04G3231 Ceratophyllum demersum
CDE05G2849 Ceratophyllum demersum
CDE05G3642 Ceratophyllum demersum
CDE06G0885 Ceratophyllum demersum
CDE06G1785 Ceratophyllum demersum
CDE07G0932 Ceratophyllum demersum
Cfa006465 Carpinus fangiana
Cfa010707 Carpinus fangiana
Cfa014284 Carpinus fangiana
Cfa014285 Carpinus fangiana
Cfa019432 Carpinus fangiana
Ciclev10002832m.g Citrus clementina
Ciclev10017119m.g Citrus clementina
Ciclev10018069m.g Citrus clementina
Ciclev10018354m.g Citrus clementina
Ciclev10033019m.g Citrus clementina
CiPaw.03G104000 Carya illinoinensis
CiPaw.03G275200 Carya illinoinensis
CiPaw.03G275400 Carya illinoinensis
CiPaw.03G275700 Carya illinoinensis
CiPaw.07G006600 Carya illinoinensis
CiPaw.14G074900 Carya illinoinensis
ClCG00G004140 Citrullus lanatus
ClCG02G002430 Citrullus lanatus
ClCG02G002440 Citrullus lanatus
ClCG02G002450 Citrullus lanatus
ClCG06G009130 Citrullus lanatus
ClCG10G012730 Citrullus lanatus
COL.COLO4_04216 Corchorus olitorius
COL.COLO4_15285 Corchorus olitorius
COL.COLO4_29440 Corchorus olitorius
COL.COLO4_31993 Corchorus olitorius
COL.COLO4_36678 Corchorus olitorius
Cpa.g.c26789.3 Carica papaya
Cpa.g.sc117.63 Carica papaya
Cpa.g.sc132.60 Carica papaya
CsaV3_1G045660 Cucumis sativus L.
CsaV3_3G032560 Cucumis sativus L.
CsaV3_6G037530 Cucumis sativus L.
CsaV3_7G002970 Cucumis sativus L.
CsaV3_7G002990 Cucumis sativus L.
CSS0002101 Camellia sinensis var. sinensis
CSS0009032 Camellia sinensis var. sinensis
CSS0020845 Camellia sinensis var. sinensis
CSS0029713 Camellia sinensis var. sinensis
CSS0044521 Camellia sinensis var. sinensis
CSS0050152 Camellia sinensis var. sinensis
DCAR_021124 Daucus carota
DCAR_029589 Daucus carota
Dinv03670 Davidia involucrata
Dinv06817 Davidia involucrata
Dinv07105 Davidia involucrata
Dinv07821 Davidia involucrata
Dinv07823 Davidia involucrata
Dinv07826 Davidia involucrata
Dinv08699 Davidia involucrata
Dinv14886 Davidia involucrata
Dinv16245 Davidia involucrata
Dinv29729 Davidia involucrata
Dinv35137 Davidia involucrata
Dinv36007 Davidia involucrata
Dinv39650 Davidia involucrata
Dinv42872 Davidia involucrata
Dinv43942 Davidia involucrata
Duzib093G0614 Durio zibethinus
Duzib133G0035 Durio zibethinus
Duzib138G0289 Durio zibethinus
Duzib138G1181 Durio zibethinus
Duzib138G1565 Durio zibethinus
Duzib177G1046 Durio zibethinus
ECA234G2531 Erigeron canadensis
ECA234G3020 Erigeron canadensis
ECA236G1656 Erigeron canadensis
ECA236G2154 Erigeron canadensis
ECA236G3146 Erigeron canadensis
EL10Ac4g09183 Beta vulgaris
EL10Ac7g16472 Beta vulgaris
EL10Ac9g22781 Beta vulgaris
EL10Ac9g22783 Beta vulgaris
Eucgr.B01717 Eucalyptus grandis
Eucgr.E01779 Eucalyptus grandis
Eucgr.K00714 Eucalyptus grandis
Eucgr.K00715 Eucalyptus grandis
Eucgr.K00718 Eucalyptus grandis
Eucgr.K00719 Eucalyptus grandis
FAN01G2178 Fragaria x ananassa
FAN01G2635 Fragaria x ananassa
FAN03G1035 Fragaria x ananassa
FAN05G4961 Fragaria x ananassa
FAN06G0369 Fragaria x ananassa
FAN10G0410 Fragaria x ananassa
FAN14G1403 Fragaria x ananassa
FvH4_6g03460 Fragaria vesca
FvH4_7g00040 Fragaria vesca
Glyma.02G092300 Glycine max
Glyma.02G265900 Glycine max
Glyma.10G160800 Glycine max
Glyma.14G051800 Glycine max
Glyma.15G217700 Glycine max
Glyma.18G290300 Glycine max
Glyma.18G290400 Glycine max
Glyma.20G227600 Glycine max
Gohir.A01G198700 Gossypium hirsutum
Gohir.A04G057000 Gossypium hirsutum
Gohir.A07G171500 Gossypium hirsutum
Gohir.A11G255400 Gossypium hirsutum
Gohir.D01G188900 Gossypium hirsutum
Gohir.D04G094000 Gossypium hirsutum
Gohir.D07G174200 Gossypium hirsutum
Gohir.D07G174300 Gossypium hirsutum
Gohir.D11G265100 Gossypium hirsutum
Gorai.001G194800 Gossypium raimondii
Gorai.001G194900 Gossypium raimondii
Gorai.002G232400 Gossypium raimondii
Gorai.007G285200 Gossypium raimondii
Gorai.009G393300 Gossypium raimondii
GSVIVG01030393001 Vitis vinifera
HanXRQChr04g0126801 Helianthus annuus
HanXRQChr10g0292371 Helianthus annuus
HanXRQChr12g0366701 Helianthus annuus
HanXRQChr12g0366711 Helianthus annuus
HanXRQChr16g0508281 Helianthus annuus
Haze_04327 Corylus avellana
Haze_12732 Corylus avellana
Hma1.2p1_0541F.1_g174820 Hydrangea macrophylla
HPP92_007478 Vanilla planifolia
HPP92_007479 Vanilla planifolia
HPP92_017845 Vanilla planifolia
HPP92_017847 Vanilla planifolia
HPP92_017848 Vanilla planifolia
HPP92_017849 Vanilla planifolia
HPP92_023457 Vanilla planifolia
HPP92_023475 Vanilla planifolia
Lalb_Chr03g0032001 Lupinus albus
Lalb_Chr10g0091681 Lupinus albus
Lalb_Chr21g0310921 Lupinus albus
Lj1C786T3 Lonicera japonica
Lj1C786T4 Lonicera japonica
Lj1C786T5 Lonicera japonica
Lj1g0003287 Lotus japonicus
Lj1g0015313 Lotus japonicus
Lj1g0016514 Lotus japonicus
Lj1g0019647 Lotus japonicus
Lj1P785T44 Lonicera japonica
Lj3g0006104 Lotus japonicus
Lj5g0013085 Lotus japonicus
Lj7P562T18 Lonicera japonica
Lj9P619T33 Lonicera japonica
Lsat_1_v5_gn_1_56441 Lactuca sativa
Lsat_1_v5_gn_3_4101 Lactuca sativa
Lsat_1_v5_gn_4_42441 Lactuca sativa
Lsat_1_v5_gn_5_114921 Lactuca sativa
Lsat_1_v5_gn_7_33641 Lactuca sativa
Lsat_1_v5_gn_7_94500 Lactuca sativa
Lsat_1_v5_gn_8_151781 Lactuca sativa
Manes.09G156200 Manihot esculenta
Manes.10G152600 Manihot esculenta
Manes.12G060702 Manihot esculenta
Manes.13G063982 Manihot esculenta
Manes.13G064009 Manihot esculenta
Manes.13G064036 Manihot esculenta
Manes.13G064300 Manihot esculenta
Mapoly0031s0092 Marchantia polymorpha
MBI03_g29112_MAGBIO Magnolia biondii
MBI03_g34699_MAGBIO Magnolia biondii
MBI03_g40586_MAGBIO Magnolia biondii
MBI03_g40587_MAGBIO Magnolia biondii
MBI03_g41973_MAGBIO Magnolia biondii
MBI03_g41975_MAGBIO Magnolia biondii
MBI03_g41976_MAGBIO Magnolia biondii
MBI13_g29647_MAGBIO Magnolia biondii
MBI13_g29648_MAGBIO Magnolia biondii
MBI13_g42369_MAGBIO Magnolia biondii
MBI19_g17428_MAGBIO Magnolia biondii
MD02G1319800 Malus domestica
MD04G1220600 Malus domestica
MD09G1118000 Malus domestica
MD09G1118500 Malus domestica
MD14G1000900 Malus domestica
MD17G1109300 Malus domestica
Medtr1g081270 Medicago truncatula
Medtr7g024873 Medicago truncatula
Medtr7g024880 Medicago truncatula
Medtr7g024890 Medicago truncatula
Medtr7g024900 Medicago truncatula
Medtr8g446810 Medicago truncatula
MELO3C014359.2 Cucumis melo
MELO3C018876.2 Cucumis melo
MELO3C018877.2 Cucumis melo
MELO3C018879.2 Cucumis melo
MELO3C023929.2 Cucumis melo
MELO3C024676.2 Cucumis melo
Migut.B01069 Erythranthe guttata
Migut.B01403 Erythranthe guttata
MSTRG.28101 Avicennia marina
MSTRG.28102 Avicennia marina
MSTRG.28103 Avicennia marina
Nitab4.5_0000012g0250 Nicotiana tabacum
Nitab4.5_0000068g0190 Nicotiana tabacum
Nitab4.5_0000468g0100 Nicotiana tabacum
Nitab4.5_0002319g0010 Nicotiana tabacum
Nn1g00079 Nelumbo nucifera
Nn1g03318 Nelumbo nucifera
Nn1g03319 Nelumbo nucifera
Nn1g03320 Nelumbo nucifera
Nn1g07371 Nelumbo nucifera
Nn1g07372 Nelumbo nucifera
Nn1g07373 Nelumbo nucifera
Nn1g07374 Nelumbo nucifera
Nn1g07375 Nelumbo nucifera
Nn1g07376 Nelumbo nucifera
Nn1g07377 Nelumbo nucifera
Nn1g07393 Nelumbo nucifera
Nn1g07394 Nelumbo nucifera
Nn2g14296 Nelumbo nucifera
Nn2g15744 Nelumbo nucifera
Nn7g35961 Nelumbo nucifera
Nn7g35962 Nelumbo nucifera
Oeu037947.1 Olea europaea
Oeu054520.1 Olea europaea
Oeu060704.1 Olea europaea
Os03g0411300 Oryza sativa ssp. japonica
Os08g0502600 Oryza sativa ssp. japonica
Os09g0482800 Oryza sativa ssp. japonica
Os09g0482840 Oryza sativa ssp. japonica
Os09g0483100 Oryza sativa ssp. japonica
Os09g0483300 Oryza sativa ssp. japonica
Os09g0483500 Oryza sativa ssp. japonica
Os10g0116300 Oryza sativa ssp. japonica
Peaxi162Scf00402g00084 Petunia axillaris
PGR083G0173 Punica granatum
PGR083G2869 Punica granatum
PGR142G1780 Punica granatum
PGR142G3159 Punica granatum
PGSC0003DMG400005051 Solanum tuberosum
PGSC0003DMG400007481 Solanum tuberosum
PGSC0003DMG400028985 Solanum tuberosum
Phvul.007G186300 Phaseolus vulgaris
Phvul.008G012000 Phaseolus vulgaris
Phvul.011G181100 Phaseolus vulgaris
Potri.001G231100 Populus trichocarpa
Potri.002G218201 Populus trichocarpa
Potri.002G218300 Populus trichocarpa
Potri.002G218500 Populus trichocarpa
Potri.002G218700 Populus trichocarpa
Potri.002G218725 Populus trichocarpa
Potri.002G218750 Populus trichocarpa
Potri.002G218775 Populus trichocarpa
Potri.002G218800 Populus trichocarpa
Potri.002G219000 Populus trichocarpa
Potri.005G049900 Populus trichocarpa
Potri.014G161200 Populus trichocarpa
Pp3c27_7790 Physcomitrium patens
PRCOL_00006708 Prasinoderma coloniale
Prupe.2G002300 Prunus persica
Prupe.3G205900 Prunus persica
Prupe.6G339600 Prunus persica
Psat4g142600 Pisum sativum
Psat6g147040 Pisum sativum
PSO339G2407 Papaver somniferum
PSO339G4993 Papaver somniferum
PSO384G0371 Papaver somniferum
PSO801G0571 Papaver somniferum
QL03p024467 Quercus lobata
QL04p001582 Quercus lobata
QL08p029810 Quercus lobata
RcHm_v2.0_Chr1g0313211 Rosa chinensis
RcHm_v2.0_Chr1g0331981 Rosa chinensis
RcHm_v2.0_Chr3g0451951 Rosa chinensis
RcHm_v2.0_Chr4g0404011 Rosa chinensis
RcHm_v2.0_Chr5g0065041 Rosa chinensis
Rhsim05G0160400 Rhododendron simsii
Rhsim07G0049600 Rhododendron simsii
Rhsim12G0031600 Rhododendron simsii
Sabra02G0170600 Salix brachista
Sabra02G0170700 Salix brachista
Sabra05G0044900 Salix brachista
Sabra05G0045100 Salix brachista
Sabra14G0122900 Salix brachista
Sabra15G0074200 Salix brachista
Sabra16G0138600 Salix brachista
SalBow5G4956 Salvia bowleyana
SalBow8G2129 Salvia bowleyana
Sc09g0003780 Simmondsia chinensis
Sc15g0000750 Simmondsia chinensis
Sed0007522 Sechium edule
Sed0011708 Sechium edule
Sed0013410 Sechium edule
Sed0017915 Sechium edule
Sed0028193 Sechium edule
SGA_v2.0_scaffold5G03105 Striga asiatica
SGA_v2.0_scaffold95G28683 Striga asiatica
SMO137G0091 Selaginella moellendorffii
SMO353G0269 Selaginella moellendorffii
Solyc01g073710.2 Solanum lycopersicum
Solyc03g031630.3 Solanum lycopersicum
Solyc10g044700.2 Solanum lycopersicum
Sopen01g033280 Solanum pennellii
Sopen03g005500 Solanum pennellii
Sopen10g013380 Solanum pennellii
Sp4g26380 Schrenkiella parvula
SpUn0001_0200 Schrenkiella parvula
TAR369G0678 Trochodendron aralioides
TAR623G0472 Trochodendron aralioides
TAR623G1027 Trochodendron aralioides
TAR626G0528 Trochodendron aralioides
TAR636G3349 Trochodendron aralioides
THA.LOC104801017 Tarenaya hassleriana
THA.LOC104805818 Tarenaya hassleriana
THA.LOC104817147 Tarenaya hassleriana
THA.LOC104821153 Tarenaya hassleriana
Thecc.01G186800 Theobroma cacao
Thecc.01G186900 Theobroma cacao
Thecc.05G180700 Theobroma cacao
Thecc.05G288800 Theobroma cacao
Thhalv10001674m.g Eutrema salsugineum
Thhalv10024165m.g Eutrema salsugineum
TPR.G11148 Trifolium pratense
TPR.G16198 Trifolium pratense
TPR.G18295 Trifolium pratense
TPR.G27881 Trifolium pratense
TWI09G0577 Tripterygium wilfordii
unitig_0.g1367 Utricularia gibba
unitig_61.g26436 Utricularia gibba
vmacro13606 Vaccinium macrocarpon
vmacro13607 Vaccinium macrocarpon
vmacro22464 Vaccinium macrocarpon
VMungo0647G1876 Vigna mungo
VMungo0720G1347 Vigna mungo
VMungo1127G1150 Vigna mungo
VMungo1383G3242 Vigna mungo
Zm00001eb019830 Zea mays
Zm00001eb034280 Zea mays
Zm00001eb034300 Zea mays
Zm00001eb034330 Zea mays
Zm00001eb034390 Zea mays
Zm00001eb034490 Zea mays
Zm00001eb034530 Zea mays
Zm00001eb034590 Zea mays
Zm00001eb034620 Zea mays

User provided reference genes

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