Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p11580 Brassica napus
A01p17380 Brassica napus
A01p17400 Brassica napus
A02p28850 Brassica napus
A06p46780 Brassica napus
A08p20860 Brassica napus
A09p14230 Brassica napus
Aa31LG3G470 Aethionema arabicum
Aa31LG6G2210 Aethionema arabicum
Aa31LG9G8010 Aethionema arabicum
Actinidia18851 Actinidia chinensis
Actinidia22374 Actinidia chinensis
Actinidia27822 Actinidia chinensis
Actinidia29909 Actinidia chinensis
Actinidia38454 Actinidia chinensis
Ah.09g228120 Amaranthus hybridus
Ah.14g085120 Amaranthus hybridus
AL2G10690 Arabidopsis lyrata
AL7G26860 Arabidopsis lyrata
AL7G34380 Arabidopsis lyrata
AL8G14110 Arabidopsis lyrata
Aqoxy1G03906 Aquilegia oxysepala
Aqoxy7G04025 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KS67M3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R60CUW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VK3CXU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZSLI3V Arachis hypogaea
AT1G64280 Arabidopsis thaliana
AT4G19660 Arabidopsis thaliana
AT4G26120 Arabidopsis thaliana
AT5G45110 Arabidopsis thaliana
ATR0763G217 Amborella trichopoda
ATR0789G057 Amborella trichopoda
ATR0789G112 Amborella trichopoda
Atru.chr10.591 Acer truncatum
Atru.chr6.2020 Acer truncatum
Atru.chr6.2021 Acer truncatum
Atru.chr7.1620 Acer truncatum
Atru.chr7.702 Acer truncatum
Atru.chr7.703 Acer truncatum
AUR62029042 Chenopodium quinoa
AUR62033940 Chenopodium quinoa
BcaB02g07198 Brassica carinata
BcaB02g10055 Brassica carinata
BcaB02g11439 Brassica carinata
BcaB03g12494 Brassica carinata
BcaB07g30476 Brassica carinata
BcaB07g31515 Brassica carinata
BcaC03g16724 Brassica carinata
BcaC04g22635 Brassica carinata
BcaC06g30629 Brassica carinata
BcaC06g31574 Brassica carinata
BcaC06g34490 Brassica carinata
BcaC07g38224 Brassica carinata
BcaC09g50666 Brassica carinata
BcaC09g50668 Brassica carinata
BcaC09g51387 Brassica carinata
BcaNung01759 Brassica carinata
BcaNung05236 Brassica carinata
BcaNung05238 Brassica carinata
BolC1t01341H Brassica oleracea
BolC1t02112H Brassica oleracea
BolC1t02118H Brassica oleracea
BolC2t10649H Brassica oleracea
BolC7t43323H Brassica oleracea
BolC8t48653H Brassica oleracea
BolC9t54613H Brassica oleracea
BraA01t01106Z Brassica rapa
BraA01t01692Z Brassica rapa
BraA01t01694Z Brassica rapa
BraA02t07919Z Brassica rapa
BraA06t27550Z Brassica rapa
BraA08t34040Z Brassica rapa
BraA09t37072Z Brassica rapa
C01p13670 Brassica napus
C01p21860 Brassica napus
C01p21910 Brassica napus
C02p45860 Brassica napus
C07p27900 Brassica napus
C08p09790 Brassica napus
C09p17140 Brassica napus
CAN.G1202.18 Capsicum annuum
CAN.G1386.2 Capsicum annuum
CAN.G946.7 Capsicum annuum
CAN.G953.10 Capsicum annuum
CANSAT35G0933 Cannabis sativa
CANSAT64G1901 Cannabis sativa
CANSAT64G2682 Cannabis sativa
CARHR046670 Cardamine hirsuta
CARHR047720 Cardamine hirsuta
CARHR177470 Cardamine hirsuta
CARHR226480 Cardamine hirsuta
CARHR233640 Cardamine hirsuta
CARHR254220 Cardamine hirsuta
Carub.0002s0054 Capsella rubella
Carub.0007s1483 Capsella rubella
Carub.0007s2149 Capsella rubella
Carub.0008s0310 Capsella rubella
Ca_06255_v3 Cicer arietinum L.
Ca_11348_v3 Cicer arietinum L.
Ca_11349_v3 Cicer arietinum L.
Ca_11745_v3 Cicer arietinum L.
Cc05_g01250 Coffea canephora
Cc06_g11580 Coffea canephora
Cc09_g06750 Coffea canephora
CDE04G0193 Ceratophyllum demersum
CDE06G1941 Ceratophyllum demersum
CDE06G2468 Ceratophyllum demersum
Cfa000734 Carpinus fangiana
Cfa000735 Carpinus fangiana
Cfa003065 Carpinus fangiana
Cfa023018 Carpinus fangiana
Ciclev10007832m.g Citrus clementina
Ciclev10017873m.g Citrus clementina
Ciclev10030929m.g Citrus clementina
Ciclev10031020m.g Citrus clementina
Ciclev10031115m.g Citrus clementina
Ciclev10031258m.g Citrus clementina
Ciclev10031310m.g Citrus clementina
Ciclev10031343m.g Citrus clementina
Ciclev10031432m.g Citrus clementina
Ciclev10031627m.g Citrus clementina
Ciclev10031749m.g Citrus clementina
Ciclev10033090m.g Citrus clementina
Ciclev10033533m.g Citrus clementina
Ciclev10033569m.g Citrus clementina
Ciclev10033799m.g Citrus clementina
Ciclev10033908m.g Citrus clementina
CiPaw.03G213100 Carya illinoinensis
CiPaw.03G213300 Carya illinoinensis
CiPaw.04G148200 Carya illinoinensis
CiPaw.09G152700 Carya illinoinensis
CiPaw.10G113000 Carya illinoinensis
ClCG01G009050 Citrullus lanatus
ClCG07G010770 Citrullus lanatus
COL.COLO4_07222 Corchorus olitorius
COL.COLO4_18182 Corchorus olitorius
COL.COLO4_29883 Corchorus olitorius
COL.COLO4_30946 Corchorus olitorius
Cpa.g.sc135.42 Carica papaya
Cpa.g.sc50.119 Carica papaya
Cpa.g.sc61.4 Carica papaya
Cpa.g.sc61.5 Carica papaya
CsaV3_4G007550 Cucumis sativus L.
CSS0007599 Camellia sinensis var. sinensis
CSS0033230 Camellia sinensis var. sinensis
CSS0034352 Camellia sinensis var. sinensis
DCAR_003797 Daucus carota
DCAR_007790 Daucus carota
Dinv03470 Davidia involucrata
Dinv03685 Davidia involucrata
Dinv15394 Davidia involucrata
Dinv36781 Davidia involucrata
Duzib147G0946 Durio zibethinus
Duzib160G0578 Durio zibethinus
Duzib168G2042 Durio zibethinus
Duzib192G0867 Durio zibethinus
ECA232G1091 Erigeron canadensis
ECA232G2200 Erigeron canadensis
ECA234G2518 Erigeron canadensis
EL10Ac8g19183 Beta vulgaris
Eucgr.A02033 Eucalyptus grandis
Eucgr.C00872 Eucalyptus grandis
Eucgr.C03423 Eucalyptus grandis
Eucgr.E01922 Eucalyptus grandis
Eucgr.H03908 Eucalyptus grandis
Eucgr.H03909 Eucalyptus grandis
FAN02G1830 Fragaria x ananassa
FAN02G3091 Fragaria x ananassa
FAN05G4630 Fragaria x ananassa
FAN05G4741 Fragaria x ananassa
FAN09G1762 Fragaria x ananassa
FAN09G3989 Fragaria x ananassa
FAN14G3714 Fragaria x ananassa
FAN14G4473 Fragaria x ananassa
FAN16G1790 Fragaria x ananassa
FAN19G1874 Fragaria x ananassa
FAN21G1721 Fragaria x ananassa
FAN23G2936 Fragaria x ananassa
FAN25G3048 Fragaria x ananassa
FAN26G2294 Fragaria x ananassa
FAN26G3219 Fragaria x ananassa
FAN28G1808 Fragaria x ananassa
FvH4_1g07810 Fragaria vesca
FvH4_3g11950 Fragaria vesca
FvH4_6g38820 Fragaria vesca
FvH4_6g38821 Fragaria vesca
FvH4_6g38830 Fragaria vesca
Glyma.02G283300 Glycine max
Glyma.09G020800 Glycine max
Glyma.09G064700 Glycine max
Glyma.14G031300 Glycine max
Glyma.15G127200 Glycine max
Gohir.A08G245500 Gossypium hirsutum
Gohir.A09G008200 Gossypium hirsutum
Gohir.A09G076800 Gossypium hirsutum
Gohir.A10G045900 Gossypium hirsutum
Gohir.D08G266500 Gossypium hirsutum
Gohir.D09G007500 Gossypium hirsutum
Gohir.D09G076700 Gossypium hirsutum
Gohir.D10G047100 Gossypium hirsutum
Gorai.004G284300 Gossypium raimondii
Gorai.006G009000 Gossypium raimondii
Gorai.006G091900 Gossypium raimondii
Gorai.011G050200 Gossypium raimondii
GSVIVG01015181001 Vitis vinifera
GSVIVG01026274001 Vitis vinifera
HanXRQChr12g0354641 Helianthus annuus
HanXRQChr12g0378171 Helianthus annuus
HanXRQChr13g0406261 Helianthus annuus
Haze_06007 Corylus avellana
Haze_13616 Corylus avellana
Haze_25932 Corylus avellana
Hma1.2p1_0169F.1_g074920 Hydrangea macrophylla
Hma1.2p1_0365F.1_g136710 Hydrangea macrophylla
Hma1.2p1_1540F.1_g289680 Hydrangea macrophylla
Hma1.2p1_1848F.1_g305220 Hydrangea macrophylla
Hma1.2p1_2261F.1_g318340 Hydrangea macrophylla
Hma1.2p1_3164F.1_g333520 Hydrangea macrophylla
HPP92_000554 Vanilla planifolia
HPP92_000604 Vanilla planifolia
HPP92_003978 Vanilla planifolia
HPP92_012289 Vanilla planifolia
Hund25990 Selenicereus undatus
Lalb_Chr12g0204241 Lupinus albus
Lalb_Chr17g0348171 Lupinus albus
Lalb_Chr18g0057771 Lupinus albus
Lj1A588G25 Lonicera japonica
Lj2A354T53 Lonicera japonica
Lj6g0009648 Lotus japonicus
Lj6g0023749 Lotus japonicus
Lj7C678T7 Lonicera japonica
LjContig00049g0001725 Lotus japonicus
LjContig00049g0021178 Lotus japonicus
Lsat_1_v5_gn_5_142961 Lactuca sativa
Lsat_1_v5_gn_5_36521 Lactuca sativa
Lsat_1_v5_gn_8_117861 Lactuca sativa
Manes.14G155900 Manihot esculenta
Manes.14G156100 Manihot esculenta
Manes.16G050900 Manihot esculenta
Manes.16G100600 Manihot esculenta
Mapoly0029s0009 Marchantia polymorpha
MBI01_g20342_MAGBIO Magnolia biondii
MBI18_g29064_MAGBIO Magnolia biondii
MD02G1082100 Malus domestica
MD05G1256300 Malus domestica
MD05G1256400 Malus domestica
MD09G1146600 Malus domestica
MD10G1236700 Malus domestica
MD10G1236800 Malus domestica
MD15G1209500 Malus domestica
MD15G1209700 Malus domestica
MD17G1133200 Malus domestica
MD17G1133300 Malus domestica
Medtr2g028950 Medicago truncatula
Medtr2g039880 Medicago truncatula
Medtr3g102610 Medicago truncatula
Medtr5g090770 Medicago truncatula
MELO3C016187.2 Cucumis melo
MELO3C021795.2 Cucumis melo
Migut.L01508 Erythranthe guttata
Migut.M00077 Erythranthe guttata
Migut.M01961 Erythranthe guttata
MSTRG.10550 Avicennia marina
MSTRG.12263 Avicennia marina
MSTRG.14103 Avicennia marina
MSTRG.16332 Avicennia marina
Nitab4.5_0000019g0260 Nicotiana tabacum
Nitab4.5_0001519g0060 Nicotiana tabacum
Nitab4.5_0001552g0090 Nicotiana tabacum
Nitab4.5_0002574g0030 Nicotiana tabacum
Nitab4.5_0002593g0010 Nicotiana tabacum
Nitab4.5_0005030g0030 Nicotiana tabacum
Nitab4.5_0007814g0030 Nicotiana tabacum
Nitab4.5_0014645g0010 Nicotiana tabacum
Nn6g34039 Nelumbo nucifera
Nn6g35513 Nelumbo nucifera
Nn7g38044 Nelumbo nucifera
Nn7g38493 Nelumbo nucifera
Nn7g38494 Nelumbo nucifera
Nn7g38495 Nelumbo nucifera
Nn7g38496 Nelumbo nucifera
Nn8g38810 Nelumbo nucifera
Oeu008716.1 Olea europaea
Oeu008980.1 Olea europaea
Oeu022917.1 Olea europaea
Oeu034349.1 Olea europaea
Oeu034802.1 Olea europaea
Oeu039602.1 Olea europaea
Oeu040160.1 Olea europaea
Oeu045614.1 Olea europaea
Oeu056850.1 Olea europaea
Os01g0194300 Oryza sativa ssp. japonica
Os01g0767900 Oryza sativa ssp. japonica
Os03g0667100 Oryza sativa ssp. japonica
Peaxi162Scf00221g00002 Petunia axillaris
Peaxi162Scf00359g01115 Petunia axillaris
Peaxi162Scf00956g00312 Petunia axillaris
Peaxi162Scf00956g00313 Petunia axillaris
PGR031G2158 Punica granatum
PGR042G2619 Punica granatum
PGR142G2080 Punica granatum
PGSC0003DMG400021210 Solanum tuberosum
PGSC0003DMG401000923 Solanum tuberosum
Phvul.006G131400 Phaseolus vulgaris
Phvul.008G195900 Phaseolus vulgaris
Potri.002G056500 Populus trichocarpa
Potri.005G206100 Populus trichocarpa
Potri.006G148100 Populus trichocarpa
Potri.012G118300 Populus trichocarpa
Potri.012G118500 Populus trichocarpa
Potri.015G113466 Populus trichocarpa
Potri.015G114501 Populus trichocarpa
Potri.015G116900 Populus trichocarpa
Potri.015G117200 Populus trichocarpa
Pp3c19_7560 Physcomitrium patens
Pp3c21_7570 Physcomitrium patens
Prupe.3G178800 Prunus persica
Prupe.4G107500 Prunus persica
Prupe.4G107800 Prunus persica
Prupe.7G206800 Prunus persica
Psat1g169720 Pisum sativum
Psat2g017520 Pisum sativum
PSO210G0566 Papaver somniferum
PSO210G0662 Papaver somniferum
PSO210G1527 Papaver somniferum
PSO210G3109 Papaver somniferum
PSO210G3287 Papaver somniferum
PSO210G4435 Papaver somniferum
PSO210G5435 Papaver somniferum
PSO210G5862 Papaver somniferum
PSO210G6195 Papaver somniferum
QL02p062253 Quercus lobata
QL08p045462 Quercus lobata
QL11p018348 Quercus lobata
RcHm_v2.0_Chr2g0093681 Rosa chinensis
RcHm_v2.0_Chr2g0152421 Rosa chinensis
RcHm_v2.0_Chr2g0152431 Rosa chinensis
RcHm_v2.0_Chr2g0152441 Rosa chinensis
RcHm_v2.0_Chr5g0019531 Rosa chinensis
Rhsim05G0017300 Rhododendron simsii
Rhsim05G0017400 Rhododendron simsii
Rhsim05G0018000 Rhododendron simsii
Rhsim05G0018100 Rhododendron simsii
Rhsim13G0130800 Rhododendron simsii
Sabra02G0045800 Salix brachista
Sabra05G0156700 Salix brachista
Sabra06G0117200 Salix brachista
Sabra12G0090100 Salix brachista
Sabra15G0135400 Salix brachista
SalBow1G3839 Salvia bowleyana
SalBow7G3274 Salvia bowleyana
SalBow8G2644 Salvia bowleyana
Sc08g0008570 Simmondsia chinensis
Sed0001100 Sechium edule
Sed0003433 Sechium edule
Sed0006989 Sechium edule
Sed0027388 Sechium edule
SEGI_01449 Sequoiadendron giganteum
SEGI_17319 Sequoiadendron giganteum
SGA_v2.0_scaffold181G39716 Striga asiatica
SGA_v2.0_scaffold21G09398 Striga asiatica
SGA_v2.0_scaffold26G11381 Striga asiatica
SGA_v2.0_scaffold49G18388 Striga asiatica
SGA_v2.0_scaffold535G52767 Striga asiatica
SGA_v2.0_scaffold797G53612 Striga asiatica
SMO340G0275 Selaginella moellendorffii
Solyc02g069310.3 Solanum lycopersicum
Solyc07g040690.3 Solanum lycopersicum
Solyc07g044980.3 Solanum lycopersicum
Sopen02g018470 Solanum pennellii
Sopen07g019400 Solanum pennellii
Sopen07g023510 Solanum pennellii
Sp2g00470 Schrenkiella parvula
Sp2g09920 Schrenkiella parvula
Sp7g18230 Schrenkiella parvula
Sp7g24140 Schrenkiella parvula
TAR624G0175 Trochodendron aralioides
TAR624G0637 Trochodendron aralioides
TAR626G1420 Trochodendron aralioides
THA.LOC104811424 Tarenaya hassleriana
THA.LOC104812903 Tarenaya hassleriana
THA.LOC104817761 Tarenaya hassleriana
Thecc.01G167100 Theobroma cacao
Thecc.02G176100 Theobroma cacao
Thecc.06G137100 Theobroma cacao
Thecc.09G086200 Theobroma cacao
Thhalv10000824m.g Eutrema salsugineum
Thhalv10023365m.g Eutrema salsugineum
Thhalv10024745m.g Eutrema salsugineum
Thhalv10024746m.g Eutrema salsugineum
Thhalv10024752m.g Eutrema salsugineum
TPR.G13414 Trifolium pratense
TPR.G17508 Trifolium pratense
TPR.G423 Trifolium pratense
TPR.G8784 Trifolium pratense
TWI14G0827 Tripterygium wilfordii
TWI14G0926 Tripterygium wilfordii
TWI23G0078 Tripterygium wilfordii
TWI34G0625 Tripterygium wilfordii
TWI38G0637 Tripterygium wilfordii
TWI38G0798 Tripterygium wilfordii
unitig_746.g26796 Utricularia gibba
vmacro03497 Vaccinium macrocarpon
vmacro17136 Vaccinium macrocarpon
vmacro17259 Vaccinium macrocarpon
vmacro17260 Vaccinium macrocarpon
vmacro17262 Vaccinium macrocarpon
vmacro22769 Vaccinium macrocarpon
vmacro22770 Vaccinium macrocarpon
vmacro22815 Vaccinium macrocarpon
VMungo0540G0551 Vigna mungo
VMungo0647G0780 Vigna mungo
Zm00001eb065420 Zea mays
Zm00001eb121040 Zea mays
Zm00001eb370160 Zea mays

User provided reference genes

Program Settings