Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00820 Brassica napus
A04p04710 Brassica napus
A05p06960 Brassica napus
A06p07470 Brassica napus
A09p48170 Brassica napus
A10p33050 Brassica napus
Aa31LG10G9860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1354 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3335 Anthoceros agrestis
Actinidia02983 Actinidia chinensis
Actinidia08153 Actinidia chinensis
Actinidia19753 Actinidia chinensis
Actinidia25065 Actinidia chinensis
Actinidia34343 Actinidia chinensis
Actinidia35759 Actinidia chinensis
AL1G21510 Arabidopsis lyrata
AL5G36360 Arabidopsis lyrata
AL6G11850 Arabidopsis lyrata
Aqoxy2G01994 Aquilegia oxysepala
Aqoxy4G03052 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1CEU3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9BIX4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HHD0VQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HZY1Y2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JH2BY5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LX3PYU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NIAT1F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W1RV07 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y9KA2N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZSH83N Arachis hypogaea
AT1G10657 Arabidopsis thaliana
AT3G28990 Arabidopsis thaliana
AT3G55240 Arabidopsis thaliana
AT5G02580 Arabidopsis thaliana
ATR0033G004 Amborella trichopoda
ATR1091G112 Amborella trichopoda
Atru.chr12.565 Acer truncatum
Atru.chr8.1918 Acer truncatum
BcaB01g00120 Brassica carinata
BcaB01g00123 Brassica carinata
BcaB01g06175 Brassica carinata
BcaB01g06192 Brassica carinata
BcaB02g08437 Brassica carinata
BcaB02g09121 Brassica carinata
BcaB08g37367 Brassica carinata
BcaC02g09736 Brassica carinata
BcaC02g12069 Brassica carinata
BcaC05g24962 Brassica carinata
BcaC06g32001 Brassica carinata
BcaC07g38621 Brassica carinata
BcaC07g39841 Brassica carinata
BolC4t25283H Brassica oleracea
BolC5t29646H Brassica oleracea
BolC8t50666H Brassica oleracea
BraA03t09465Z Brassica rapa
BraA04t16183Z Brassica rapa
BraA05t19660Z Brassica rapa
BraA06t23952Z Brassica rapa
BraA09t40273Z Brassica rapa
BraA09t41834Z Brassica rapa
BraA10t45342Z Brassica rapa
C03p01070 Brassica napus
C04p08290 Brassica napus
C04p37030 Brassica napus
C05p09000 Brassica napus
C08p30430 Brassica napus
C09p74030 Brassica napus
CAN.G125.6 Capsicum annuum
CAN.G1339.5 Capsicum annuum
CAN.G1557.10 Capsicum annuum
CAN.G1557.11 Capsicum annuum
CAN.G222.67 Capsicum annuum
CAN.G688.11 Capsicum annuum
CANSAT01G0732 Cannabis sativa
CANSAT80G1625 Cannabis sativa
CARHR010830 Cardamine hirsuta
CARHR165240 Cardamine hirsuta
CARHR210780 Cardamine hirsuta
Carub.0001s1013 Capsella rubella
Carub.0002s1242 Capsella rubella
Carub.0005s0758 Capsella rubella
Carub.0005s2190 Capsella rubella
Carub.0006s0138 Capsella rubella
CBR_g70694 Chara braunii
Cc02_g08500 Coffea canephora
Cc06_g03110 Coffea canephora
Cc11_g15340 Coffea canephora
CDE02G0216 Ceratophyllum demersum
CDE04G2236 Ceratophyllum demersum
CDE05G3686 Ceratophyllum demersum
CDE07G0308 Ceratophyllum demersum
CDE07G0916 Ceratophyllum demersum
CDE09G0736 Ceratophyllum demersum
Cfa001542 Carpinus fangiana
Cfa017444 Carpinus fangiana
Ciclev10013206m.g Citrus clementina
Ciclev10033163m.g Citrus clementina
Ciclev10033177m.g Citrus clementina
CiPaw.01G281800 Carya illinoinensis
CiPaw.05G186100 Carya illinoinensis
CiPaw.06G070300 Carya illinoinensis
CiPaw.09G187600 Carya illinoinensis
CiPaw.10G141700 Carya illinoinensis
ClCG02G013460 Citrullus lanatus
ClCG04G008500 Citrullus lanatus
ClCG08G017900 Citrullus lanatus
ClCG09G020240 Citrullus lanatus
COL.COLO4_10918 Corchorus olitorius
COL.COLO4_24209 Corchorus olitorius
COL.COLO4_29054 Corchorus olitorius
Cpa.g.sc1.330 Carica papaya
Cpa.g.sc114.1 Carica papaya
Cpa.g.sc69.71 Carica papaya
CsaV3_2G024740 Cucumis sativus L.
CsaV3_4G024650 Cucumis sativus L.
CsaV3_5G006690 Cucumis sativus L.
CsaV3_5G026200 Cucumis sativus L.
CSS0011230 Camellia sinensis var. sinensis
CSS0029414 Camellia sinensis var. sinensis
CSS0030813 Camellia sinensis var. sinensis
CSS0032891 Camellia sinensis var. sinensis
CSS0036216 Camellia sinensis var. sinensis
CSS0048205 Camellia sinensis var. sinensis
DCAR_009260 Daucus carota
DCAR_011243 Daucus carota
DCAR_017893 Daucus carota
DCAR_020859 Daucus carota
DCAR_027679 Daucus carota
DCAR_032551 Daucus carota
Dinv15273 Davidia involucrata
Dinv24823 Davidia involucrata
Dinv25957 Davidia involucrata
Dinv25959 Davidia involucrata
Dinv35089 Davidia involucrata
Dinv35651 Davidia involucrata
Dinv37217 Davidia involucrata
Duzib093G0665 Durio zibethinus
Duzib106G0729 Durio zibethinus
Duzib106G1395 Durio zibethinus
Duzib128G0582 Durio zibethinus
Duzib128G1221 Durio zibethinus
Duzib147G0041 Durio zibethinus
Duzib251G0198 Durio zibethinus
Duzib264G0550 Durio zibethinus
ECA232G1105 Erigeron canadensis
ECA232G2559 Erigeron canadensis
ECA233G2869 Erigeron canadensis
ECA238G3625 Erigeron canadensis
ECA248G1730 Erigeron canadensis
EL10Ac2g03461 Beta vulgaris
EL10Ac6g13703 Beta vulgaris
Eucgr.B03311 Eucalyptus grandis
Eucgr.G02763 Eucalyptus grandis
Eucgr.G02890 Eucalyptus grandis
Eucgr.G02891 Eucalyptus grandis
Eucgr.I01761 Eucalyptus grandis
Eucgr.I01765 Eucalyptus grandis
Eucgr.K03172 Eucalyptus grandis
Eucgr.L02704 Eucalyptus grandis
FAN01G0344 Fragaria x ananassa
FAN02G1688 Fragaria x ananassa
FAN03G2704 Fragaria x ananassa
FAN05G3855 Fragaria x ananassa
FAN06G3112 Fragaria x ananassa
FAN06G3158 Fragaria x ananassa
FAN09G1883 Fragaria x ananassa
FAN09G4304 Fragaria x ananassa
FAN09G4367 Fragaria x ananassa
FAN10G1638 Fragaria x ananassa
FAN12G0845 Fragaria x ananassa
FAN14G0862 Fragaria x ananassa
FAN17G0795 Fragaria x ananassa
FAN22G1299 Fragaria x ananassa
FvH4_4g32920 Fragaria vesca
FvH4_6g14600 Fragaria vesca
FvH4_7g21050 Fragaria vesca
Glyma.02G095700 Glycine max
Glyma.03G173700 Glycine max
Glyma.08G285100 Glycine max
Glyma.10G291000 Glycine max
Glyma.13G133300 Glycine max
Glyma.18G140500 Glycine max
Glyma.18G285700 Glycine max
Glyma.19G174600 Glycine max
Glyma.20G240100 Glycine max
Gohir.A01G162400 Gossypium hirsutum
Gohir.A04G079200 Gossypium hirsutum
Gohir.A04G136000 Gossypium hirsutum
Gohir.A05G357700 Gossypium hirsutum
Gohir.A06G177400 Gossypium hirsutum
Gohir.A09G027850 Gossypium hirsutum
Gohir.A09G159200 Gossypium hirsutum
Gohir.A11G325800 Gossypium hirsutum
Gohir.A13G096500 Gossypium hirsutum
Gohir.D01G149700 Gossypium hirsutum
Gohir.D04G056300 Gossypium hirsutum
Gohir.D04G118400 Gossypium hirsutum
Gohir.D04G179100 Gossypium hirsutum
Gohir.D06G173400 Gossypium hirsutum
Gohir.D09G027200 Gossypium hirsutum
Gohir.D09G154800 Gossypium hirsutum
Gohir.D11G344700 Gossypium hirsutum
Gohir.D13G097900 Gossypium hirsutum
Gorai.001G250100 Gossypium raimondii
Gorai.002G185800 Gossypium raimondii
Gorai.006G031700 Gossypium raimondii
Gorai.006G176200 Gossypium raimondii
Gorai.007G375100 Gossypium raimondii
Gorai.009G423500 Gossypium raimondii
Gorai.010G202600 Gossypium raimondii
Gorai.012G063200 Gossypium raimondii
Gorai.012G172200 Gossypium raimondii
GSVIVG01005962001 Vitis vinifera
GSVIVG01005963001 Vitis vinifera
GSVIVG01005964001 Vitis vinifera
GSVIVG01013777001 Vitis vinifera
GSVIVG01023534001 Vitis vinifera
GSVIVG01025604001 Vitis vinifera
HanXRQChr01g0026561 Helianthus annuus
HanXRQChr07g0200761 Helianthus annuus
HanXRQChr09g0247621 Helianthus annuus
HanXRQChr09g0254991 Helianthus annuus
HanXRQChr11g0349461 Helianthus annuus
HanXRQChr14g0457641 Helianthus annuus
HanXRQChr17g0539481 Helianthus annuus
Haze_16991 Corylus avellana
Haze_16992 Corylus avellana
Haze_20719 Corylus avellana
Hma1.2p1_0111F.1_g053200 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132450 Hydrangea macrophylla
Hma1.2p1_1483F.1_g286290 Hydrangea macrophylla
HPP92_019454 Vanilla planifolia
Hund06006 Selenicereus undatus
Hund19999 Selenicereus undatus
Hund22416 Selenicereus undatus
Hund25367 Selenicereus undatus
Lalb_Chr01g0019191 Lupinus albus
Lalb_Chr16g0392301 Lupinus albus
Lalb_Chr17g0336301 Lupinus albus
Lalb_Chr21g0307321 Lupinus albus
Lalb_Chr21g0314411 Lupinus albus
Lalb_Chr25g0289441 Lupinus albus
Lj1g0004403 Lotus japonicus
Lj1g0014824 Lotus japonicus
Lj4g0003734 Lotus japonicus
Lj5g0008672 Lotus japonicus
Lsat_1_v5_gn_1_55960 Lactuca sativa
Lsat_1_v5_gn_4_183200 Lactuca sativa
Lsat_1_v5_gn_8_17360 Lactuca sativa
Lsat_1_v5_gn_9_66461 Lactuca sativa
Manes.07G110100 Manihot esculenta
Manes.08G075300 Manihot esculenta
Manes.10G037300 Manihot esculenta
Manes.12G026600 Manihot esculenta
Manes.15G148900 Manihot esculenta
Mapoly0002s0278 Marchantia polymorpha
MBI14_g30587_MAGBIO Magnolia biondii
MBI16_g37496_MAGBIO Magnolia biondii
MD01G1120400 Malus domestica
MD04G1119000 Malus domestica
MD07G1189600 Malus domestica
MD12G1136300 Malus domestica
MD13G1095000 Malus domestica
MD16G1096100 Malus domestica
Medtr0001s0190 Medicago truncatula
Medtr1g115490 Medicago truncatula
Medtr7g022840 Medicago truncatula
Medtr7g100335 Medicago truncatula
Medtr8g069835 Medicago truncatula
MELO3C003098.2 Cucumis melo
MELO3C010673.2 Cucumis melo
MELO3C023827.2 Cucumis melo
MELO3C025477.2 Cucumis melo
MELO3C033764.2 Cucumis melo
Migut.E00178 Erythranthe guttata
Migut.J00376 Erythranthe guttata
Migut.L01625 Erythranthe guttata
MSTRG.2404 Avicennia marina
MSTRG.584 Avicennia marina
Nitab4.5_0000202g0120 Nicotiana tabacum
Nitab4.5_0000203g0290 Nicotiana tabacum
Nitab4.5_0000216g0010 Nicotiana tabacum
Nitab4.5_0000426g0130 Nicotiana tabacum
Nitab4.5_0000914g0300 Nicotiana tabacum
Nitab4.5_0001873g0100 Nicotiana tabacum
Nitab4.5_0002541g0080 Nicotiana tabacum
Nitab4.5_0002655g0030 Nicotiana tabacum
Nitab4.5_0002995g0020 Nicotiana tabacum
Nitab4.5_0004055g0070 Nicotiana tabacum
Nitab4.5_0004851g0020 Nicotiana tabacum
Nn2g10485 Nelumbo nucifera
Nn2g10507 Nelumbo nucifera
Nn2g12872 Nelumbo nucifera
Nn2g12887 Nelumbo nucifera
Nn3g16827 Nelumbo nucifera
Nn4g22719 Nelumbo nucifera
Oeu025633.1 Olea europaea
Oeu050658.1 Olea europaea
Oeu055458.1 Olea europaea
Os01g0837600 Oryza sativa ssp. japonica
Os03g0280400 Oryza sativa ssp. japonica
Os05g0462000 Oryza sativa ssp. japonica
Peaxi162Scf00015g02222 Petunia axillaris
Peaxi162Scf00039g00814 Petunia axillaris
Peaxi162Scf00060g00413 Petunia axillaris
Peaxi162Scf00604g00026 Petunia axillaris
PGR004G2359 Punica granatum
PGR102G0024 Punica granatum
PGSC0003DMG400013512 Solanum tuberosum
PGSC0003DMG400023514 Solanum tuberosum
PGSC0003DMG400023905 Solanum tuberosum
Phvul.001G171100 Phaseolus vulgaris
Phvul.003G061900 Phaseolus vulgaris
Phvul.007G010001 Phaseolus vulgaris
Phvul.007G159200 Phaseolus vulgaris
Phvul.008G015900 Phaseolus vulgaris
Potri.006G213500 Populus trichocarpa
Potri.008G189100 Populus trichocarpa
Potri.010G042300 Populus trichocarpa
Potri.010G211500 Populus trichocarpa
Prupe.1G250400 Prunus persica
Prupe.2G227200 Prunus persica
Prupe.2G227300 Prunus persica
Prupe.6G248700 Prunus persica
Psat0s2601g0040 Pisum sativum
Psat3g048200 Pisum sativum
Psat4g113560 Pisum sativum
Psat6g237040 Pisum sativum
PSO206G0017 Papaver somniferum
PSO478G0643 Papaver somniferum
PSO478G2903 Papaver somniferum
PSO478G3865 Papaver somniferum
PSO782G0177 Papaver somniferum
PSO782G0983 Papaver somniferum
QL01p026397 Quercus lobata
QL03p059342 Quercus lobata
QL07p046636 Quercus lobata
QL08p057905 Quercus lobata
QL08p057925 Quercus lobata
RcHm_v2.0_Chr1g0365441 Rosa chinensis
RcHm_v2.0_Chr3g0467681 Rosa chinensis
RcHm_v2.0_Chr4g0441951 Rosa chinensis
Rhsim03G0128400 Rhododendron simsii
Rhsim05G0186800 Rhododendron simsii
Rhsim05G0186900 Rhododendron simsii
Rhsim05G0187000 Rhododendron simsii
Rhsim08G0052500 Rhododendron simsii
Rhsim12G0114300 Rhododendron simsii
Sabra10G0025100 Salix brachista
Sabra10G0163500 Salix brachista
SalBow2G0758 Salvia bowleyana
SalBow3G0619 Salvia bowleyana
SalBow4G2862 Salvia bowleyana
Sc20g0002440 Simmondsia chinensis
Sed0000043 Sechium edule
Sed0006719 Sechium edule
Sed0008434 Sechium edule
Sed0013626 Sechium edule
Sed0017269 Sechium edule
Sed0019196 Sechium edule
Sed0023413 Sechium edule
SEGI_03505 Sequoiadendron giganteum
SEGI_16451 Sequoiadendron giganteum
SEGI_24202 Sequoiadendron giganteum
SEGI_25357 Sequoiadendron giganteum
SEGI_30225 Sequoiadendron giganteum
SEGI_34736 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33839 Striga asiatica
SMO358G0239 Selaginella moellendorffii
Solyc05g005230.3 Solanum lycopersicum
Solyc05g054750.3 Solanum lycopersicum
Solyc09g005730.4 Solanum lycopersicum
Solyc10g084600.2 Solanum lycopersicum
Sopen00g010560 Solanum pennellii
Sopen04g005470 Solanum pennellii
Sopen05g001240 Solanum pennellii
Sopen05g033220 Solanum pennellii
Sopen09g001620 Solanum pennellii
Sopen10g034040 Solanum pennellii
Sp1g09350 Schrenkiella parvula
Sp5g07220 Schrenkiella parvula
Sp6g39940 Schrenkiella parvula
TAR369G0906 Trochodendron aralioides
TAR375G0940 Trochodendron aralioides
TAR622G0758 Trochodendron aralioides
TAR633G0512 Trochodendron aralioides
TAR636G1198 Trochodendron aralioides
THA.LOC104806077 Tarenaya hassleriana
THA.LOC104809602 Tarenaya hassleriana
THA.LOC104810007 Tarenaya hassleriana
THA.LOC104816293 Tarenaya hassleriana
Thecc.02G253900 Theobroma cacao
Thecc.04G013800 Theobroma cacao
Thecc.05G046400 Theobroma cacao
Thecc.10G058000 Theobroma cacao
Thecc.10G058300 Theobroma cacao
Thecc.10G058500 Theobroma cacao
Thhalv10009171m.g Eutrema salsugineum
Thhalv10010856m.g Eutrema salsugineum
Thhalv10015145m.g Eutrema salsugineum
TPR.G15516 Trifolium pratense
TPR.G21454 Trifolium pratense
TPR.G24788 Trifolium pratense
TWI15G0169 Tripterygium wilfordii
TWI18G0280 Tripterygium wilfordii
TWI36G0004 Tripterygium wilfordii
TWI38G0359 Tripterygium wilfordii
TWI77G0781 Tripterygium wilfordii
unitig_578.g16049 Utricularia gibba
unitig_8.g4951 Utricularia gibba
vmacro07141 Vaccinium macrocarpon
vmacro16227 Vaccinium macrocarpon
vmacro20112 Vaccinium macrocarpon
VMungo1383G1982 Vigna mungo
Zm00001eb148630 Zea mays
Zm00001eb289770 Zea mays
Zm00001eb368080 Zea mays

User provided reference genes

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