Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p05640 Brassica napus
A04p30770 Brassica napus
A07p22800 Brassica napus
A10p25330 Brassica napus
Aa31LG10G11040 Aethionema arabicum
Aa31LG3G14780 Aethionema arabicum
Aa31LG5G19180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2600 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3192 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2189 Anthoceros agrestis
Actinidia11674 Actinidia chinensis
Actinidia13028 Actinidia chinensis
Actinidia13979 Actinidia chinensis
Actinidia21539 Actinidia chinensis
Actinidia23977 Actinidia chinensis
Actinidia26695 Actinidia chinensis
Actinidia29734 Actinidia chinensis
Actinidia33893 Actinidia chinensis
Ah.04g162070 Amaranthus hybridus
Ah.06g193950 Amaranthus hybridus
Ah.10g038610 Amaranthus hybridus
Ah.16g104010 Amaranthus hybridus
AL1G44650 Arabidopsis lyrata
AL4G11590 Arabidopsis lyrata
AL4G38220 Arabidopsis lyrata
AL5G37460 Arabidopsis lyrata
AL6G23370 Arabidopsis lyrata
Aqoxy1G00316 Aquilegia oxysepala
Aqoxy2G00141 Aquilegia oxysepala
Aqoxy2G00769 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1N0RH8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.25ES8Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73F65L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BC29PU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C9QR92 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FA5MG2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GHX3DH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KR6Y3F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S263AF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U1NDM5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0TK9R Arachis hypogaea
AT2G40400 Arabidopsis thaliana
AT3G56140 Arabidopsis thaliana
AT5G12470 Arabidopsis thaliana
ATR0594G213 Amborella trichopoda
ATR0782G039 Amborella trichopoda
Atru.chr11.2576 Acer truncatum
Atru.chr12.119 Acer truncatum
Atru.chr12.120 Acer truncatum
Atru.chr3.2676 Acer truncatum
AUR62000144 Chenopodium quinoa
AUR62009417 Chenopodium quinoa
AUR62012321 Chenopodium quinoa
AUR62019325 Chenopodium quinoa
AUR62022961 Chenopodium quinoa
AUR62023094 Chenopodium quinoa
BcaB01g05400 Brassica carinata
BcaB02g07667 Brassica carinata
BcaB08g37009 Brassica carinata
BcaB08g37013 Brassica carinata
BcaC02g07317 Brassica carinata
BcaC02g09640 Brassica carinata
BcaC04g19179 Brassica carinata
BcaC04g19180 Brassica carinata
BcaC04g21570 Brassica carinata
BcaC05g26516 Brassica carinata
BcaC08g44762 Brassica carinata
BcaNung03610 Brassica carinata
BolC3t13166H Brassica oleracea
BolC3t17255H Brassica oleracea
BolC4t28323H Brassica oleracea
BolC6t37503H Brassica oleracea
BolC9t59272H Brassica oleracea
BraA03t09904Z Brassica rapa
BraA04t18535Z Brassica rapa
BraA07t29945Z Brassica rapa
BraA10t44596Z Brassica rapa
C03p06600 Brassica napus
C04p68170 Brassica napus
C04p68190 Brassica napus
C06p23300 Brassica napus
C09p64340 Brassica napus
CAN.G219.78 Capsicum annuum
CAN.G2578.1 Capsicum annuum
CAN.G302.3 Capsicum annuum
CAN.G384.3 Capsicum annuum
CAN.G659.7 Capsicum annuum
CANSAT54G1921 Cannabis sativa
CANSAT56G0726 Cannabis sativa
CANSAT80G2833 Cannabis sativa
CARHR135480 Cardamine hirsuta
CARHR166290 Cardamine hirsuta
CARHR200630 Cardamine hirsuta
Carub.0004s2264 Capsella rubella
Carub.0005s2289 Capsella rubella
Carub.0006s1101 Capsella rubella
Ca_08198_v3 Cicer arietinum L.
Ca_15169_v3 Cicer arietinum L.
Ca_18971_v3 Cicer arietinum L.
Ca_26643_v3 Cicer arietinum L.
CBR_g28056 Chara braunii
CBR_g38031 Chara braunii
Cc01_g04810 Coffea canephora
Cc02_g05880 Coffea canephora
Cc02_g28560 Coffea canephora
CDE05G1075 Ceratophyllum demersum
CDE05G1294 Ceratophyllum demersum
CDE07G0354 Ceratophyllum demersum
CDE09G0984 Ceratophyllum demersum
Cfa001256 Carpinus fangiana
Cfa009793 Carpinus fangiana
Ciclev10015274m.g Citrus clementina
Ciclev10030811m.g Citrus clementina
Ciclev10031842m.g Citrus clementina
CiPaw.01G302600 Carya illinoinensis
CiPaw.14G003000 Carya illinoinensis
CiPaw.14G117500 Carya illinoinensis
ClCG02G023090 Citrullus lanatus
ClCG10G012170 Citrullus lanatus
ClCG11G005950 Citrullus lanatus
COL.COLO4_05362 Corchorus olitorius
COL.COLO4_12339 Corchorus olitorius
COL.COLO4_24867 Corchorus olitorius
Cpa.g.sc125.46 Carica papaya
Cpa.g.sc19.113 Carica papaya
Cpa.g.sc84.37 Carica papaya
Cre03.g177350 Chlamydomonas reinhardtii
CsaV3_3G031930 Cucumis sativus L.
CsaV3_6G002050 Cucumis sativus L.
CsaV3_6G039190 Cucumis sativus L.
CSS0002812 Camellia sinensis var. sinensis
CSS0004143 Camellia sinensis var. sinensis
CSS0007575 Camellia sinensis var. sinensis
CSS0010410 Camellia sinensis var. sinensis
CSS0019514 Camellia sinensis var. sinensis
CSS0020476 Camellia sinensis var. sinensis
CSS0031136 Camellia sinensis var. sinensis
CSS0050080 Camellia sinensis var. sinensis
DCAR_011861 Daucus carota
DCAR_024413 Daucus carota
DCAR_029705 Daucus carota
Dinv21799 Davidia involucrata
Dinv22165 Davidia involucrata
Dinv22166 Davidia involucrata
Dinv36241 Davidia involucrata
Dinv43410 Davidia involucrata
Duzib138G0468 Durio zibethinus
Duzib150G1373 Durio zibethinus
Duzib168G1941 Durio zibethinus
Duzib170G0982 Durio zibethinus
ECA233G4966 Erigeron canadensis
ECA238G1259 Erigeron canadensis
ECA248G1089 Erigeron canadensis
EL10Ac2g04367 Beta vulgaris
EL10Ac2g04913 Beta vulgaris
EL10Ac4g10217 Beta vulgaris
EL10Ac4g10222 Beta vulgaris
EL10Ac8g19536 Beta vulgaris
EL10Ac8g19537 Beta vulgaris
Eucgr.B03706 Eucalyptus grandis
Eucgr.G03317 Eucalyptus grandis
Eucgr.G03331 Eucalyptus grandis
Eucgr.J00163 Eucalyptus grandis
Eucgr.J00754 Eucalyptus grandis
FAN01G2884 Fragaria x ananassa
FAN01G3075 Fragaria x ananassa
FAN03G0154 Fragaria x ananassa
FAN03G1866 Fragaria x ananassa
FAN03G2621 Fragaria x ananassa
FAN03G3344 Fragaria x ananassa
FAN06G3146 Fragaria x ananassa
FAN06G3540 Fragaria x ananassa
FAN06G4580 Fragaria x ananassa
FAN10G1393 Fragaria x ananassa
FAN10G1819 Fragaria x ananassa
FAN11G0382 Fragaria x ananassa
FAN11G1496 Fragaria x ananassa
FAN16G0952 Fragaria x ananassa
FAN21G2494 Fragaria x ananassa
FvH4_3g28550 Fragaria vesca
FvH4_7g01660 Fragaria vesca
FvH4_7g25380 Fragaria vesca
Glyma.09G227100 Glycine max
Glyma.11G093500 Glycine max
Glyma.11G160484 Glycine max
Glyma.11G233800 Glycine max
Glyma.12G009700 Glycine max
Glyma.12G020000 Glycine max
Glyma.18G023200 Glycine max
Gohir.A07G123400 Gossypium hirsutum
Gohir.A07G124600 Gossypium hirsutum
Gohir.A08G142500 Gossypium hirsutum
Gohir.A09G113200 Gossypium hirsutum
Gohir.A13G217000 Gossypium hirsutum
Gohir.D07G127400 Gossypium hirsutum
Gohir.D07G128900 Gossypium hirsutum
Gohir.D08G163500 Gossypium hirsutum
Gohir.D09G109733 Gossypium hirsutum
Gohir.D09G109766 Gossypium hirsutum
Gohir.D09G109800 Gossypium hirsutum
Gohir.D13G220600 Gossypium hirsutum
Gorai.001G137600 Gossypium raimondii
Gorai.001G139200 Gossypium raimondii
Gorai.004G170300 Gossypium raimondii
Gorai.006G127400 Gossypium raimondii
Gorai.013G251600 Gossypium raimondii
GSVIVG01025237001 Vitis vinifera
GSVIVG01032197001 Vitis vinifera
GSVIVG01032735001 Vitis vinifera
HanXRQChr01g0007781 Helianthus annuus
HanXRQChr02g0052021 Helianthus annuus
HanXRQChr07g0203501 Helianthus annuus
HanXRQChr13g0401161 Helianthus annuus
Haze_03138 Corylus avellana
Haze_03140 Corylus avellana
Haze_03141 Corylus avellana
Haze_03142 Corylus avellana
Haze_17295 Corylus avellana
Haze_23160 Corylus avellana
Haze_27522 Corylus avellana
Hma1.2p1_0685F.1_g203170 Hydrangea macrophylla
Hma1.2p1_1687F.1_g297510 Hydrangea macrophylla
HPP92_003592 Vanilla planifolia
HPP92_012086 Vanilla planifolia
HPP92_019705 Vanilla planifolia
HPP92_019734 Vanilla planifolia
Hund15866 Selenicereus undatus
Hund22009 Selenicereus undatus
Lalb_Chr01g0000481 Lupinus albus
Lalb_Chr01g0001041 Lupinus albus
Lalb_Chr04g0263861 Lupinus albus
Lalb_Chr08g0231381 Lupinus albus
Lalb_Chr11g0075101 Lupinus albus
Lj1C321T6 Lonicera japonica
Lj1C962G10 Lonicera japonica
Lj2A627G31 Lonicera japonica
Lj3g0003688 Lotus japonicus
Lj3g0014717 Lotus japonicus
Lj3g0019630 Lotus japonicus
Lj3g0019879 Lotus japonicus
Lj6g0017401 Lotus japonicus
Lj7A577G36 Lonicera japonica
Lj8A60T48 Lonicera japonica
Lsat_1_v5_gn_1_103141 Lactuca sativa
Lsat_1_v5_gn_2_125780 Lactuca sativa
Lsat_1_v5_gn_6_25640 Lactuca sativa
Manes.06G162700 Manihot esculenta
Manes.07G010400 Manihot esculenta
Manes.07G135966 Manihot esculenta
Manes.10G007200 Manihot esculenta
Manes.14G003866 Manihot esculenta
Manes.14G015672 Manihot esculenta
Mapoly0015s0125 Marchantia polymorpha
Mapoly0059s0064 Marchantia polymorpha
MBI03_g45955_MAGBIO Magnolia biondii
MBI17_g18832_MAGBIO Magnolia biondii
MBI18_g29661_MAGBIO Magnolia biondii
MD00G1159000 Malus domestica
MD01G1160000 Malus domestica
MD02G1301900 Malus domestica
MD03G1172700 Malus domestica
MD07G1022100 Malus domestica
MD07G1022200 Malus domestica
MD11G1190600 Malus domestica
Medtr0013s0150 Medicago truncatula
Medtr1g045030 Medicago truncatula
Medtr3g033620 Medicago truncatula
Medtr3g071970 Medicago truncatula
Medtr4g077000 Medicago truncatula
MELO3C008325.2 Cucumis melo
MELO3C014578.2 Cucumis melo
MELO3C023998.2 Cucumis melo
Migut.D00616 Erythranthe guttata
Migut.F00620 Erythranthe guttata
Migut.F01461 Erythranthe guttata
Migut.F01462 Erythranthe guttata
Migut.N01797 Erythranthe guttata
Migut.N02329 Erythranthe guttata
MSTRG.12464 Avicennia marina
MSTRG.20561 Avicennia marina
Nitab4.5_0001291g0130 Nicotiana tabacum
Nitab4.5_0002854g0050 Nicotiana tabacum
Nitab4.5_0006012g0020 Nicotiana tabacum
Nitab4.5_0008371g0020 Nicotiana tabacum
Nn1g04363 Nelumbo nucifera
Nn2g11022 Nelumbo nucifera
Nn2g13903 Nelumbo nucifera
Nn2g15214 Nelumbo nucifera
Nn7g36298 Nelumbo nucifera
Oeu008083.1 Olea europaea
Oeu008086.2 Olea europaea
Oeu016673.1 Olea europaea
Oeu025878.1 Olea europaea
Oeu027376.1 Olea europaea
Os01g0826900 Oryza sativa ssp. japonica
Os01g0957200 Oryza sativa ssp. japonica
Os05g0388600 Oryza sativa ssp. japonica
Peaxi162Scf00004g02916 Petunia axillaris
Peaxi162Scf00032g00077 Petunia axillaris
Peaxi162Scf00284g00235 Petunia axillaris
Peaxi162Scf00694g00430 Petunia axillaris
PGR031G1406 Punica granatum
PGR044G0181 Punica granatum
PGR119G2500 Punica granatum
PGSC0003DMG400006782 Solanum tuberosum
PGSC0003DMG400023943 Solanum tuberosum
PGSC0003DMG400032528 Solanum tuberosum
Phvul.001G247100 Phaseolus vulgaris
Phvul.005G035000 Phaseolus vulgaris
Phvul.011G011000 Phaseolus vulgaris
Phvul.011G022600 Phaseolus vulgaris
Potri.001G256300 Populus trichocarpa
Potri.001G262200 Populus trichocarpa
Potri.008G074300 Populus trichocarpa
Potri.009G051800 Populus trichocarpa
Pp3c10_3610 Physcomitrium patens
Pp3c1_14330 Physcomitrium patens
Pp3c2_20491 Physcomitrium patens
Pp3c2_26060 Physcomitrium patens
Pp3c3_35080 Physcomitrium patens
Pp3c8_1750 Physcomitrium patens
Prupe.2G022300 Prunus persica
Prupe.2G022800 Prunus persica
Prupe.2G258000 Prunus persica
Prupe.4G253900 Prunus persica
Psat0s2790g0200 Pisum sativum
Psat5g126120 Pisum sativum
Psat7g172160 Pisum sativum
PSO063G0482 Papaver somniferum
PSO339G3904 Papaver somniferum
PSO384G4720 Papaver somniferum
PSO782G4391 Papaver somniferum
QL01p004255 Quercus lobata
QL04p009848 Quercus lobata
QL08p064026 Quercus lobata
RcHm_v2.0_Chr1g0317941 Rosa chinensis
RcHm_v2.0_Chr1g0371311 Rosa chinensis
RcHm_v2.0_Chr1g0371331 Rosa chinensis
RcHm_v2.0_Chr5g0052771 Rosa chinensis
Rhsim01G0126800 Rhododendron simsii
Rhsim01G0192300 Rhododendron simsii
Rhsim03G0148300 Rhododendron simsii
Sabra08G0055300 Salix brachista
Sabra09G0038000 Salix brachista
Sabra16G0160800 Salix brachista
SalBow3G0728 Salvia bowleyana
SalBow5G1361 Salvia bowleyana
SalBow5G2006 Salvia bowleyana
SalBow5G3910 Salvia bowleyana
Sc09g0000800 Simmondsia chinensis
Sc11g0005470 Simmondsia chinensis
Sc11g0009050 Simmondsia chinensis
Sed0003947 Sechium edule
Sed0004877 Sechium edule
Sed0005086 Sechium edule
Sed0021910 Sechium edule
Sed0027098 Sechium edule
SEGI_05952 Sequoiadendron giganteum
SEGI_11999 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36000 Striga asiatica
SGA_v2.0_scaffold29G12336 Striga asiatica
SGA_v2.0_scaffold44G16654 Striga asiatica
SGA_v2.0_scaffold4G02490 Striga asiatica
SHI29794 Sapria himalayana
SMO164G0201 Selaginella moellendorffii
SMO367G0880 Selaginella moellendorffii
Solyc01g087750.4 Solanum lycopersicum
Solyc06g050620.3 Solanum lycopersicum
Solyc11g065490.2 Solanum lycopersicum
Sopen01g034700 Solanum pennellii
Sopen06g016190 Solanum pennellii
Sopen11g025240 Solanum pennellii
Sp4g22720 Schrenkiella parvula
Sp5g06390 Schrenkiella parvula
Sp6g31130 Schrenkiella parvula
TAR623G1625 Trochodendron aralioides
TAR623G1694 Trochodendron aralioides
TAR627G0957 Trochodendron aralioides
TAR633G1305 Trochodendron aralioides
TAR636G0404 Trochodendron aralioides
TAR636G0923 Trochodendron aralioides
TAR636G1558 Trochodendron aralioides
TAR636G3559 Trochodendron aralioides
THA.LOC104799113 Tarenaya hassleriana
THA.LOC104810131 Tarenaya hassleriana
THA.LOC104811302 Tarenaya hassleriana
Thecc.01G406800 Theobroma cacao
Thecc.09G230400 Theobroma cacao
Thecc.09G236900 Theobroma cacao
Thhalv10005804m.g Eutrema salsugineum
Thhalv10013804m.g Eutrema salsugineum
Thhalv10016304m.g Eutrema salsugineum
TPR.G14559 Trifolium pratense
TPR.G23104 Trifolium pratense
TPR.G29216 Trifolium pratense
TPR.G30179 Trifolium pratense
TPR.G31169 Trifolium pratense
TWI09G1380 Tripterygium wilfordii
TWI53G0536 Tripterygium wilfordii
TWI60G0899 Tripterygium wilfordii
unitig_27.g24996 Utricularia gibba
unitig_62.g23927 Utricularia gibba
unitig_699.g19137 Utricularia gibba
vmacro06911 Vaccinium macrocarpon
vmacro08543 Vaccinium macrocarpon
vmacro14263 Vaccinium macrocarpon
vmacro21137 Vaccinium macrocarpon
vmacro21197 Vaccinium macrocarpon
VMungo1080G1449 Vigna mungo
VMungo1127G0237 Vigna mungo
VMungo1127G0289 Vigna mungo
VMungo1383G3076 Vigna mungo
Zm00001eb140540 Zea mays
Zm00001eb149270 Zea mays
Zm00001eb149820 Zea mays
Zm00001eb287090 Zea mays
Zm00001eb351960 Zea mays
Zm00001eb441710 Zea mays

User provided reference genes

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