Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p05280 Brassica napus
A06p20030 Brassica napus
A06p20040 Brassica napus
A06p20590 Brassica napus
A10p25850 Brassica napus
Aa31LG8G13050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2438 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2446 Anthoceros agrestis
Actinidia14720 Actinidia chinensis
Actinidia39711 Actinidia chinensis
Ah.09g228160 Amaranthus hybridus
Ah.10g034270 Amaranthus hybridus
Ah.10g035310 Amaranthus hybridus
AL1G43670 Arabidopsis lyrata
AL3G48700 Arabidopsis lyrata
AL5G26800 Arabidopsis lyrata
AL5G26850 Arabidopsis lyrata
AL6G22670 Arabidopsis lyrata
Aqoxy1G04287 Aquilegia oxysepala
Aqoxy5G02189 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.81R11T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.84EG73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A2Z5WA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FA7IGU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQ4AXA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JE0YWU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MK4DX9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2PK9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U7X5PN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V7GITX Arachis hypogaea
AT1G29840 Arabidopsis thaliana
AT2G19550 Arabidopsis thaliana
AT3G47560 Arabidopsis thaliana
AT3G47590 Arabidopsis thaliana
AT5G11910 Arabidopsis thaliana
ATR0716G007 Amborella trichopoda
ATR0716G061 Amborella trichopoda
ATR0716G062 Amborella trichopoda
ATR0733G166 Amborella trichopoda
Atru.chr7.1091 Acer truncatum
Atru.chr7.1610 Acer truncatum
AUR62009134 Chenopodium quinoa
AUR62029053 Chenopodium quinoa
AUR62029054 Chenopodium quinoa
AUR62033948 Chenopodium quinoa
AUR62033949 Chenopodium quinoa
AUR62033950 Chenopodium quinoa
AUR62039120 Chenopodium quinoa
AUR62043944 Chenopodium quinoa
BcaB01g00904 Brassica carinata
BcaB01g00905 Brassica carinata
BcaB01g05441 Brassica carinata
BcaB02g11530 Brassica carinata
BcaB07g31623 Brassica carinata
BcaC01g01802 Brassica carinata
BcaC01g01803 Brassica carinata
BcaC01g01805 Brassica carinata
BcaC01g02285 Brassica carinata
BcaNung07081 Brassica carinata
BolC3t13117H Brassica oleracea
BolC3t18978H Brassica oleracea
BolC3t19399H Brassica oleracea
BolC3t19400H Brassica oleracea
BolC3t19464H Brassica oleracea
BolC3t19467H Brassica oleracea
BolC9t59322H Brassica oleracea
BraA03t09867Z Brassica rapa
BraA06t25089Z Brassica rapa
BraA06t25090Z Brassica rapa
BraA06t25137Z Brassica rapa
BraA06t25138Z Brassica rapa
BraA10t44648Z Brassica rapa
C03p06070 Brassica napus
C03p67040 Brassica napus
C03p71140 Brassica napus
C03p71150 Brassica napus
C03p71750 Brassica napus
C03p71780 Brassica napus
C03p71790 Brassica napus
C09p64920 Brassica napus
CAN.G339.38 Capsicum annuum
CAN.G424.23 Capsicum annuum
CAN.G9.24 Capsicum annuum
CANSAT25G3108 Cannabis sativa
CANSAT56G0224 Cannabis sativa
CANSAT56G3477 Cannabis sativa
CARHR105230 Cardamine hirsuta
CARHR109980 Cardamine hirsuta
CARHR156190 Cardamine hirsuta
CARHR156250 Cardamine hirsuta
CARHR201250 Cardamine hirsuta
Carub.0001s2808 Capsella rubella
Carub.0003s3384 Capsella rubella
Carub.0005s1365 Capsella rubella
Carub.0005s1368 Capsella rubella
Carub.0006s1044 Capsella rubella
Ca_02169_v3 Cicer arietinum L.
Ca_13123_v3 Cicer arietinum L.
Ca_13149_v3 Cicer arietinum L.
Ca_21283_v3 Cicer arietinum L.
CBR_g47125 Chara braunii
Cc06_g11500 Coffea canephora
Cc08_g10710 Coffea canephora
CDE06G2471 Ceratophyllum demersum
Cfa003071 Carpinus fangiana
Cfa003072 Carpinus fangiana
Cfa003073 Carpinus fangiana
Ciclev10008941m.g Citrus clementina
Ciclev10009100m.g Citrus clementina
CiPaw.03G214300 Carya illinoinensis
CiPaw.03G214800 Carya illinoinensis
CiPaw.04G148600 Carya illinoinensis
CiPaw.15G038000 Carya illinoinensis
ClCG03G015490 Citrullus lanatus
COL.COLO4_09023 Corchorus olitorius
COL.COLO4_18191 Corchorus olitorius
COL.COLO4_21072 Corchorus olitorius
Cpa.g.c31672 Carica papaya
Cpa.g.sc2041.1 Carica papaya
Cre12.g535550 Chlamydomonas reinhardtii
CsaV3_1G040550 Cucumis sativus L.
CsaV3_1G040560 Cucumis sativus L.
CSS0003351 Camellia sinensis var. sinensis
CSS0012680 Camellia sinensis var. sinensis
CSS0024859 Camellia sinensis var. sinensis
CSS0031799 Camellia sinensis var. sinensis
DCAR_007729 Daucus carota
DCAR_032230 Daucus carota
Dinv27995 Davidia involucrata
Dinv42326 Davidia involucrata
Duzib150G0373 Durio zibethinus
Duzib168G1063 Durio zibethinus
Duzib168G1998 Durio zibethinus
Duzib187G0085 Durio zibethinus
Duzib187G0597 Durio zibethinus
ECA234G3678 Erigeron canadensis
ECA240G0943 Erigeron canadensis
EL10Ac2g03858 Beta vulgaris
EL10Ac8g19195 Beta vulgaris
Eucgr.C00659 Eucalyptus grandis
Eucgr.C00875 Eucalyptus grandis
Eucgr.C00876 Eucalyptus grandis
Eucgr.C00878 Eucalyptus grandis
Eucgr.C00879 Eucalyptus grandis
Eucgr.L02651 Eucalyptus grandis
FAN01G3029 Fragaria x ananassa
FAN03G2334 Fragaria x ananassa
FAN06G2929 Fragaria x ananassa
FAN06G3941 Fragaria x ananassa
FAN06G4021 Fragaria x ananassa
FAN06G4277 Fragaria x ananassa
FAN10G2938 Fragaria x ananassa
FAN15G1417 Fragaria x ananassa
FAN15G3212 Fragaria x ananassa
FAN19G1837 Fragaria x ananassa
FAN19G2451 Fragaria x ananassa
FAN19G3006 Fragaria x ananassa
FAN20G0356 Fragaria x ananassa
FAN20G1183 Fragaria x ananassa
FAN23G0401 Fragaria x ananassa
FAN23G1556 Fragaria x ananassa
FAN23G2393 Fragaria x ananassa
FAN23G3133 Fragaria x ananassa
FAN24G0746 Fragaria x ananassa
FAN26G0480 Fragaria x ananassa
FAN26G1523 Fragaria x ananassa
FAN27G2169 Fragaria x ananassa
FAN28G1636 Fragaria x ananassa
FAN28G2461 Fragaria x ananassa
FAN28G3003 Fragaria x ananassa
FvH4_1g07650 Fragaria vesca
FvH4_1g07670 Fragaria vesca
FvH4_1g07671 Fragaria vesca
FvH4_1g07680 Fragaria vesca
FvH4_1g07690 Fragaria vesca
FvH4_1g07700 Fragaria vesca
FvH4_2g31740 Fragaria vesca
FvH4_7g20370 Fragaria vesca
Glyma.09G064000 Glycine max
Glyma.13G105000 Glycine max
Glyma.13G105200 Glycine max
Glyma.13G105300 Glycine max
Glyma.14G095500 Glycine max
Glyma.15G170400 Glycine max
Glyma.17G054200 Glycine max
Glyma.17G228300 Glycine max
Gohir.A05G030200 Gossypium hirsutum
Gohir.A05G041600 Gossypium hirsutum
Gohir.A06G073200 Gossypium hirsutum
Gohir.D05G031600 Gossypium hirsutum
Gohir.D05G043300 Gossypium hirsutum
Gohir.D06G071700 Gossypium hirsutum
Gohir.D06G071900 Gossypium hirsutum
Gorai.008G076500 Gossypium raimondii
Gorai.008G274300 Gossypium raimondii
Gorai.009G031800 Gossypium raimondii
Gorai.009G044400 Gossypium raimondii
Gorai.010G083600 Gossypium raimondii
Gorai.010G083800 Gossypium raimondii
Gorai.011G199500 Gossypium raimondii
GSVIVG01015190001 Vitis vinifera
GSVIVG01015191001 Vitis vinifera
HanXRQChr03g0079571 Helianthus annuus
HanXRQChr03g0079591 Helianthus annuus
HanXRQChr10g0319391 Helianthus annuus
HanXRQChr10g0319421 Helianthus annuus
HanXRQChr12g0354571 Helianthus annuus
HanXRQChr12g0354581 Helianthus annuus
HanXRQChr12g0354611 Helianthus annuus
HanXRQChr12g0355011 Helianthus annuus
Haze_09935 Corylus avellana
Haze_18172 Corylus avellana
Haze_25923 Corylus avellana
Haze_25924 Corylus avellana
Haze_25959 Corylus avellana
Hma1.2p1_0055F.1_g031410 Hydrangea macrophylla
HPP92_009731 Vanilla planifolia
Hund03333 Selenicereus undatus
Lalb_Chr13g0299661 Lupinus albus
Lalb_Chr13g0299681 Lupinus albus
Lalb_Chr14g0366321 Lupinus albus
Lj1g0007074 Lotus japonicus
Lj4A302G10 Lonicera japonica
Lj4g0002328 Lotus japonicus
Lj5g0027456 Lotus japonicus
Lj6g0001116 Lotus japonicus
Lj7A677G53 Lonicera japonica
Lj8C538G2 Lonicera japonica
Lsat_1_v5_gn_5_142881 Lactuca sativa
Lsat_1_v5_gn_5_142901 Lactuca sativa
Manes.03G048900 Manihot esculenta
Manes.16G101100 Manihot esculenta
Mapoly0037s0049 Marchantia polymorpha
MBI01_g01256_MAGBIO Magnolia biondii
MBI04_g34118_MAGBIO Magnolia biondii
MD02G1080900 Malus domestica
MD02G1081000 Malus domestica
MD02G1081300 Malus domestica
MD02G1081400 Malus domestica
MD02G1094000 Malus domestica
MD15G1058200 Malus domestica
MD15G1058300 Malus domestica
MD15G1208700 Malus domestica
Medtr1g016050 Medicago truncatula
Medtr2g039450 Medicago truncatula
Medtr2g039480 Medicago truncatula
Medtr2g039510 Medicago truncatula
Medtr2g039550 Medicago truncatula
Medtr2g039570 Medicago truncatula
Medtr4g124530 Medicago truncatula
Medtr4g126050 Medicago truncatula
Medtr4g126120 Medicago truncatula
MELO3C015482.2 Cucumis melo
MELO3C015483.2 Cucumis melo
MELO3C016874.2 Cucumis melo
Migut.A00128 Erythranthe guttata
Migut.J00585 Erythranthe guttata
Migut.L01499 Erythranthe guttata
Migut.L01500 Erythranthe guttata
Migut.L01501 Erythranthe guttata
MSTRG.10554 Avicennia marina
MSTRG.10556 Avicennia marina
MSTRG.19507 Avicennia marina
MSTRG.25953 Avicennia marina
Nitab4.5_0002829g0070 Nicotiana tabacum
Nitab4.5_0005436g0060 Nicotiana tabacum
Nitab4.5_0010540g0030 Nicotiana tabacum
Nitab4.5_0010634g0040 Nicotiana tabacum
Nn8g38833 Nelumbo nucifera
Nn8g38845 Nelumbo nucifera
Nn8g38846 Nelumbo nucifera
Oeu017603.3 Olea europaea
Oeu036538.1 Olea europaea
Oeu039604.2 Olea europaea
Oeu056313.2 Olea europaea
Oeu059615.1 Olea europaea
Os01g0579900 Oryza sativa ssp. japonica
Os01g0580000 Oryza sativa ssp. japonica
Os05g0539500 Oryza sativa ssp. japonica
Peaxi162Scf00221g00073 Petunia axillaris
Peaxi162Scf00327g00616 Petunia axillaris
Peaxi162Scf00604g00421 Petunia axillaris
PGR031G0563 Punica granatum
PGR142G4218 Punica granatum
PGR142G4242 Punica granatum
PGR142G4296 Punica granatum
PGSC0003DMG400019064 Solanum tuberosum
PGSC0003DMG400022044 Solanum tuberosum
Phvul.001G036300 Phaseolus vulgaris
Phvul.003G135800 Phaseolus vulgaris
Phvul.003G135900 Phaseolus vulgaris
Phvul.003G136000 Phaseolus vulgaris
Phvul.003G136200 Phaseolus vulgaris
Potri.006G227900 Populus trichocarpa
Potri.013G032500 Populus trichocarpa
Potri.018G068000 Populus trichocarpa
Pp3c2_14370 Physcomitrium patens
Pp3c3_37200 Physcomitrium patens
Pp3s42_150 Physcomitrium patens
PRCOL_00003876 Prasinoderma coloniale
Prupe.1G410900 Prunus persica
Prupe.7G208200 Prunus persica
Psat0s3108g0040 Pisum sativum
Psat1g140520 Pisum sativum
Psat4g008480 Pisum sativum
Psat4g015920 Pisum sativum
Psat4g146600 Pisum sativum
Psat5g007600 Pisum sativum
Psat6g185280 Pisum sativum
PSO144G0178 Papaver somniferum
PSO210G2473 Papaver somniferum
PSO210G2586 Papaver somniferum
PSO210G3267 Papaver somniferum
PSO210G4704 Papaver somniferum
PSO210G4807 Papaver somniferum
PSO210G5979 Papaver somniferum
PSO210G7548 Papaver somniferum
PSO724G0051 Papaver somniferum
PSO724G0177 Papaver somniferum
PSO724G0449 Papaver somniferum
PSO724G0621 Papaver somniferum
PSO724G0895 Papaver somniferum
QL02p001067 Quercus lobata
QL02p062398 Quercus lobata
QL02p071663 Quercus lobata
RcHm_v2.0_Chr2g0093511 Rosa chinensis
RcHm_v2.0_Chr2g0093521 Rosa chinensis
RcHm_v2.0_Chr2g0093531 Rosa chinensis
RcHm_v2.0_Chr2g0093541 Rosa chinensis
RcHm_v2.0_Chr2g0093551 Rosa chinensis
RcHm_v2.0_Chr2g0093561 Rosa chinensis
RcHm_v2.0_Chr5g0057361 Rosa chinensis
RcHm_v2.0_Chr6g0311081 Rosa chinensis
Rhsim05G0018700 Rhododendron simsii
Rhsim07G0142000 Rhododendron simsii
Sabra06G0176400 Salix brachista
Sabra13G0032300 Salix brachista
Sabra18G0059400 Salix brachista
SalBow1G2127 Salvia bowleyana
SalBow4G1110 Salvia bowleyana
SalBow4G1140 Salvia bowleyana
SalBow6G1115 Salvia bowleyana
SalBow8G3084 Salvia bowleyana
SalBow8G3985 Salvia bowleyana
SalBow8G5609 Salvia bowleyana
Sc06g0000980 Simmondsia chinensis
Sc08g0008530 Simmondsia chinensis
Sed0006940 Sechium edule
Sed0015248 Sechium edule
SEGI_09776 Sequoiadendron giganteum
SEGI_14742 Sequoiadendron giganteum
SEGI_35023 Sequoiadendron giganteum
SGA_v2.0_scaffold23G10024 Striga asiatica
SGA_v2.0_scaffold62G21620 Striga asiatica
SGA_v2.0_scaffold6G03183 Striga asiatica
SMO304G0040 Selaginella moellendorffii
Solyc05g014100.3 Solanum lycopersicum
Solyc05g014110.3 Solanum lycopersicum
Solyc05g018770.2 Solanum lycopersicum
Solyc05g025620.3 Solanum lycopersicum
Solyc05g025625.1 Solanum lycopersicum
Solyc07g039510.4 Solanum lycopersicum
Solyc07g039520.1 Solanum lycopersicum
Solyc07g039530.1 Solanum lycopersicum
Solyc08g063070.3 Solanum lycopersicum
Sopen05g009120 Solanum pennellii
Sopen05g016960 Solanum pennellii
Sopen05g019880 Solanum pennellii
Sopen05g019890 Solanum pennellii
Sopen07g019090 Solanum pennellii
Sopen08g018640 Solanum pennellii
Sp5g14320 Schrenkiella parvula
Sp5g14325 Schrenkiella parvula
Sp5g14770 Schrenkiella parvula
Sp6g31690 Schrenkiella parvula
TAR626G0461 Trochodendron aralioides
TAR636G3690 Trochodendron aralioides
THA.LOC104814624 Tarenaya hassleriana
THA.LOC104824638 Tarenaya hassleriana
Thecc.09G055100 Theobroma cacao
Thecc.09G087500 Theobroma cacao
Thecc.09G087600 Theobroma cacao
Thecc.09G087700 Theobroma cacao
Thecc.09G236600 Theobroma cacao
Thhalv10010563m.g Eutrema salsugineum
Thhalv10010963m.g Eutrema salsugineum
Thhalv10010965m.g Eutrema salsugineum
Thhalv10010968m.g Eutrema salsugineum
Thhalv10014553m.g Eutrema salsugineum
Thhalv10015401m.g Eutrema salsugineum
TPR.G12991 Trifolium pratense
TPR.G13413 Trifolium pratense
TPR.G29844 Trifolium pratense
TPR.G29939 Trifolium pratense
TPR.G29940 Trifolium pratense
TPR.G29941 Trifolium pratense
TPR.G5195 Trifolium pratense
TPR.G9450 Trifolium pratense
TPR.G9471 Trifolium pratense
TWI32G1273 Tripterygium wilfordii
TWI34G0577 Tripterygium wilfordii
unitig_46.g18627 Utricularia gibba
unitig_749.g14228 Utricularia gibba
unitig_78.g29618 Utricularia gibba
unitig_8.g3525 Utricularia gibba
vmacro14254 Vaccinium macrocarpon
vmacro17246 Vaccinium macrocarpon
vmacro17247 Vaccinium macrocarpon
vmacro17248 Vaccinium macrocarpon
vmacro17250 Vaccinium macrocarpon
vmacro17680 Vaccinium macrocarpon
VMungo0647G0423 Vigna mungo
VMungo1215G0147 Vigna mungo
VMungo1215G1667 Vigna mungo
VMungo1215G2849 Vigna mungo
Zm00001eb160350 Zea mays
Zm00001eb160360 Zea mays
Zm00001eb294230 Zea mays
Zm00001eb368870 Zea mays

User provided reference genes

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