Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00840 Brassica napus
A03p20630 Brassica napus
A04p28550 Brassica napus
A05p31200 Brassica napus
A06p48500 Brassica napus
A09p46580 Brassica napus
Aa31LG10G9570 Aethionema arabicum
Aa31LG1G22210 Aethionema arabicum
Aa31LG5G22810 Aethionema arabicum
Aa31LG6G15830 Aethionema arabicum
Aa31LG8G5250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1754 Anthoceros agrestis
Actinidia05380 Actinidia chinensis
Actinidia06104 Actinidia chinensis
Actinidia13119 Actinidia chinensis
Ah.05g176610 Amaranthus hybridus
Ah.10g032690 Amaranthus hybridus
AL3G20670 Arabidopsis lyrata
AL3G31710 Arabidopsis lyrata
AL4G33790 Arabidopsis lyrata
AL5G34490 Arabidopsis lyrata
AL6G11860 Arabidopsis lyrata
AL7G11470 Arabidopsis lyrata
AL7G22680 Arabidopsis lyrata
Aqoxy2G01993 Aquilegia oxysepala
Aqoxy3G04205 Aquilegia oxysepala
Aqoxy4G00559 Aquilegia oxysepala
Aqoxy4G03054 Aquilegia oxysepala
Aqoxy5G01984 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.53LB3Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.962CV6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AM6VYI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D42UYZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P8J958 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RLS6BD Arachis hypogaea
AT2G37400 Arabidopsis thaliana
AT3G09490 Arabidopsis thaliana
AT3G18420 Arabidopsis thaliana
AT3G53560 Arabidopsis thaliana
AT4G39470 Arabidopsis thaliana
AT5G02590 Arabidopsis thaliana
ATR0033G032 Amborella trichopoda
ATR0618G377 Amborella trichopoda
ATR1120G039 Amborella trichopoda
Atru.chr11.1053 Acer truncatum
Atru.chr4.1163 Acer truncatum
Atru.chr4.454 Acer truncatum
Atru.chr8.2481 Acer truncatum
AUR62003292 Chenopodium quinoa
AUR62004327 Chenopodium quinoa
AUR62027169 Chenopodium quinoa
AUR62033317 Chenopodium quinoa
AUR62033342 Chenopodium quinoa
AUR62040878 Chenopodium quinoa
AUR62043010 Chenopodium quinoa
BcaB01g00263 Brassica carinata
BcaB01g06177 Brassica carinata
BcaB01g06179 Brassica carinata
BcaB01g06181 Brassica carinata
BcaB01g06182 Brassica carinata
BcaB01g06194 Brassica carinata
BcaB02g07775 Brassica carinata
BcaB04g20766 Brassica carinata
BcaB06g25887 Brassica carinata
BcaB06g28988 Brassica carinata
BcaC02g07523 Brassica carinata
BcaC02g07524 Brassica carinata
BcaC05g28629 Brassica carinata
BcaC07g39718 Brassica carinata
BcaC08g44635 Brassica carinata
BcaC09g48803 Brassica carinata
BcaNung02337 Brassica carinata
BcaNung03870 Brassica carinata
BcaNung03873 Brassica carinata
BcaNung03874 Brassica carinata
BcaNung07019 Brassica carinata
BolC1t04539H Brassica oleracea
BolC3t12669H Brassica oleracea
BolC4t28092H Brassica oleracea
BolC5t33448H Brassica oleracea
BolC7t46728H Brassica oleracea
BolC8t50492H Brassica oleracea
BraA01t03673Z Brassica rapa
BraA03t09467Z Brassica rapa
BraA04t18333Z Brassica rapa
BraA05t21961Z Brassica rapa
BraA06t27720Z Brassica rapa
BraA09t40122Z Brassica rapa
C01p45760 Brassica napus
C03p01090 Brassica napus
C04p65880 Brassica napus
C05p47230 Brassica napus
C05p47330 Brassica napus
C07p63180 Brassica napus
C08p28900 Brassica napus
CAN.G125.4 Capsicum annuum
CAN.G282.78 Capsicum annuum
CAN.G282.79 Capsicum annuum
CAN.G687.5 Capsicum annuum
CAN.G997.10 Capsicum annuum
CANSAT21G2081 Cannabis sativa
CANSAT78G1784 Cannabis sativa
CANSAT80G1471 Cannabis sativa
CARHR093780 Cardamine hirsuta
CARHR132190 Cardamine hirsuta
CARHR163460 Cardamine hirsuta
CARHR210760 Cardamine hirsuta
CARHR247260 Cardamine hirsuta
Carub.0003s0859 Capsella rubella
Carub.0003s1820 Capsella rubella
Carub.0004s1932 Capsella rubella
Carub.0005s2013 Capsella rubella
Carub.0006s0139 Capsella rubella
Carub.0007s0136 Capsella rubella
Ca_08796_v3 Cicer arietinum L.
Ca_09597_v3 Cicer arietinum L.
Ca_16900_v3 Cicer arietinum L.
Ca_18214_v3 Cicer arietinum L.
CBR_g28648 Chara braunii
Cc04_g11220 Coffea canephora
Cc06_g03120 Coffea canephora
Cc07_g16460 Coffea canephora
Cc11_g03010 Coffea canephora
CDE06G0492 Ceratophyllum demersum
CDE08G0309 Ceratophyllum demersum
Cfa001748 Carpinus fangiana
Cfa002769 Carpinus fangiana
Cfa015097 Carpinus fangiana
Cfa017445 Carpinus fangiana
Ciclev10005482m.g Citrus clementina
Ciclev10012060m.g Citrus clementina
Ciclev10025951m.g Citrus clementina
CiPaw.01G263400 Carya illinoinensis
CiPaw.03G132900 Carya illinoinensis
CiPaw.05G162900 Carya illinoinensis
CiPaw.09G187400 Carya illinoinensis
ClCG01G006980 Citrullus lanatus
ClCG01G015960 Citrullus lanatus
ClCG04G008510 Citrullus lanatus
ClCG10G020870 Citrullus lanatus
COL.COLO4_10986 Corchorus olitorius
COL.COLO4_14876 Corchorus olitorius
Cpa.g.sc114.2 Carica papaya
Cpa.g.sc2.100 Carica papaya
Cpa.g.sc72.5 Carica papaya
CsaV3_3G035140 Cucumis sativus L.
CsaV3_4G024640 Cucumis sativus L.
CsaV3_5G017400 Cucumis sativus L.
CsaV3_6G042240 Cucumis sativus L.
CSS0017481 Camellia sinensis var. sinensis
CSS0022563 Camellia sinensis var. sinensis
CSS0022606 Camellia sinensis var. sinensis
CSS0039093 Camellia sinensis var. sinensis
DCAR_001379 Daucus carota
DCAR_009261 Daucus carota
DCAR_020861 Daucus carota
DCAR_023514 Daucus carota
DCAR_026849 Daucus carota
Dinv00662 Davidia involucrata
Dinv06213 Davidia involucrata
Dinv19468 Davidia involucrata
Dinv24623 Davidia involucrata
Dinv28143 Davidia involucrata
Dinv35652 Davidia involucrata
Dinv37218 Davidia involucrata
Duzib128G0996 Durio zibethinus
Duzib248G1384 Durio zibethinus
Duzib251G0395 Durio zibethinus
Duzib268G0867 Durio zibethinus
ECA246G4900 Erigeron canadensis
ECA248G2102 Erigeron canadensis
EL10Ac2g03245 Beta vulgaris
EL10Ac4g08728 Beta vulgaris
EL10Ac6g14777 Beta vulgaris
Eucgr.A01225 Eucalyptus grandis
Eucgr.B02617 Eucalyptus grandis
Eucgr.H04883 Eucalyptus grandis
FAN02G2018 Fragaria x ananassa
FAN05G2100 Fragaria x ananassa
FAN07G2280 Fragaria x ananassa
FAN09G0072 Fragaria x ananassa
FAN12G3066 Fragaria x ananassa
FAN14G0342 Fragaria x ananassa
FAN17G0024 Fragaria x ananassa
FAN19G1870 Fragaria x ananassa
FAN23G0246 Fragaria x ananassa
FAN26G2367 Fragaria x ananassa
FvH4_1g22920 Fragaria vesca
FvH4_3g27582 Fragaria vesca
FvH4_4g36260 Fragaria vesca
FvH4_4g36290 Fragaria vesca
FvH4_6g14610 Fragaria vesca
Glyma.03G173800 Glycine max
Glyma.04G218500 Glycine max
Glyma.05G135200 Glycine max
Glyma.06G147400 Glycine max
Glyma.08G090400 Glycine max
Glyma.13G133400 Glycine max
Glyma.19G174700 Glycine max
Gohir.A01G144714 Gossypium hirsutum
Gohir.A04G079100 Gossypium hirsutum
Gohir.A11G197100 Gossypium hirsutum
Gohir.A13G090200 Gossypium hirsutum
Gohir.D01G137800 Gossypium hirsutum
Gohir.D04G118300 Gossypium hirsutum
Gohir.D11G228500 Gossypium hirsutum
Gohir.D13G097800 Gossypium hirsutum
Gorai.001G250200 Gossypium raimondii
Gorai.002G168200 Gossypium raimondii
Gorai.007G246100 Gossypium raimondii
Gorai.009G423400 Gossypium raimondii
GSVIVG01022251001 Vitis vinifera
GSVIVG01025601001 Vitis vinifera
HanXRQChr01g0026541 Helianthus annuus
HanXRQChr05g0141211 Helianthus annuus
HanXRQChr09g0254791 Helianthus annuus
HanXRQChr11g0349491 Helianthus annuus
HanXRQChr14g0446911 Helianthus annuus
HanXRQChr17g0539551 Helianthus annuus
Haze_01573 Corylus avellana
Haze_20718 Corylus avellana
Haze_25062 Corylus avellana
Hma1.2p1_0131F.1_g060590 Hydrangea macrophylla
Hma1.2p1_0262F.1_g105180 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132460 Hydrangea macrophylla
Hma1.2p1_1640F.1_g295110 Hydrangea macrophylla
HPP92_001462 Vanilla planifolia
HPP92_019458 Vanilla planifolia
HPP92_021784 Vanilla planifolia
HPP92_025615 Vanilla planifolia
Hund19630 Selenicereus undatus
Lalb_Chr01g0019181 Lupinus albus
Lalb_Chr02g0153241 Lupinus albus
Lalb_Chr07g0188111 Lupinus albus
Lalb_Chr08g0238801 Lupinus albus
Lalb_Chr12g0209201 Lupinus albus
Lalb_Chr20g0113111 Lupinus albus
Lalb_Chr25g0289431 Lupinus albus
Lj1g0009939 Lotus japonicus
Lj1g0016233 Lotus japonicus
Lj2C101T3 Lonicera japonica
Lj3P854T32 Lonicera japonica
Lj3P973T18 Lonicera japonica
Lj4A864T20 Lonicera japonica
Lj4g0008841 Lotus japonicus
Lj5g0016548 Lotus japonicus
Lsat_1_v5_gn_1_55000 Lactuca sativa
Lsat_1_v5_gn_3_27620 Lactuca sativa
Lsat_1_v5_gn_4_140021 Lactuca sativa
Manes.08G075200 Manihot esculenta
Manes.09G085800 Manihot esculenta
Manes.10G063800 Manihot esculenta
Manes.13G076346 Manihot esculenta
Mapoly0157s0006 Marchantia polymorpha
MBI01_g29003_MAGBIO Magnolia biondii
MBI06_g12319_MAGBIO Magnolia biondii
MBI14_g32001_MAGBIO Magnolia biondii
MD04G1118800 Malus domestica
MD12G1136200 Malus domestica
MD13G1010600 Malus domestica
MD15G1331000 Malus domestica
MD16G1008500 Malus domestica
Medtr1g067600 Medicago truncatula
Medtr3g095070 Medicago truncatula
Medtr7g100328 Medicago truncatula
MELO3C003097.2 Cucumis melo
MELO3C005213.2 Cucumis melo
MELO3C007465.2 Cucumis melo
MELO3C009284.2 Cucumis melo
Migut.H02446 Erythranthe guttata
Migut.J00377 Erythranthe guttata
MSTRG.23308 Avicennia marina
MSTRG.2525 Avicennia marina
MSTRG.5694 Avicennia marina
MSTRG.9954 Avicennia marina
Nitab4.5_0000069g0610 Nicotiana tabacum
Nitab4.5_0000184g0220 Nicotiana tabacum
Nitab4.5_0000202g0260 Nicotiana tabacum
Nitab4.5_0000725g0110 Nicotiana tabacum
Nitab4.5_0001532g0040 Nicotiana tabacum
Nitab4.5_0002818g0070 Nicotiana tabacum
Nitab4.5_0002995g0040 Nicotiana tabacum
Nitab4.5_0007743g0040 Nicotiana tabacum
Nitab4.5_0010623g0010 Nicotiana tabacum
Nn2g10513 Nelumbo nucifera
Nn2g12863 Nelumbo nucifera
Nn4g24877 Nelumbo nucifera
Nn6g32187 Nelumbo nucifera
Oeu024371.1 Olea europaea
Oeu044095.1 Olea europaea
Oeu049194.1 Olea europaea
Oeu060057.1 Olea europaea
Os02g0684000 Oryza sativa ssp. japonica
Os05g0182100 Oryza sativa ssp. japonica
Peaxi162Scf00017g01720 Petunia axillaris
Peaxi162Scf00039g00073 Petunia axillaris
Peaxi162Scf00097g00171 Petunia axillaris
Peaxi162Scf00106g01217 Petunia axillaris
PGR004G1896 Punica granatum
PGR044G0350 Punica granatum
PGR102G1647 Punica granatum
PGSC0003DMG400011057 Solanum tuberosum
PGSC0003DMG400023906 Solanum tuberosum
PGSC0003DMG400031201 Solanum tuberosum
PGSC0003DMG400031205 Solanum tuberosum
PGSC0003DMG400036477 Solanum tuberosum
PGSC0003DMG400040850 Solanum tuberosum
Phvul.001G171200 Phaseolus vulgaris
Phvul.002G187000 Phaseolus vulgaris
Phvul.007G159400 Phaseolus vulgaris
Phvul.009G138700 Phaseolus vulgaris
Potri.005G085700 Populus trichocarpa
Potri.006G213600 Populus trichocarpa
Potri.007G079200 Populus trichocarpa
Potri.008G142980 Populus trichocarpa
Potri.008G143600 Populus trichocarpa
Potri.010G098500 Populus trichocarpa
Potri.016G080000 Populus trichocarpa
Potri.016G081200 Populus trichocarpa
Pp3c2_28020 Physcomitrium patens
Prupe.1G342400 Prunus persica
Prupe.6G169000 Prunus persica
Prupe.6G248600 Prunus persica
Psat3g048240 Pisum sativum
Psat5g064880 Pisum sativum
Psat6g068840 Pisum sativum
Psat7g086600 Pisum sativum
PSO063G1086 Papaver somniferum
PSO206G0027 Papaver somniferum
PSO210G2523 Papaver somniferum
PSO339G1527 Papaver somniferum
PSO339G3197 Papaver somniferum
PSO384G1022 Papaver somniferum
PSO384G1972 Papaver somniferum
PSO675G1476 Papaver somniferum
PSO782G3611 Papaver somniferum
QL03p041857 Quercus lobata
QL06p031694 Quercus lobata
QL07p046613 Quercus lobata
RcHm_v2.0_Chr2g0117361 Rosa chinensis
RcHm_v2.0_Chr3g0467701 Rosa chinensis
RcHm_v2.0_Chr4g0446041 Rosa chinensis
Rhsim04G0153100 Rhododendron simsii
Rhsim06G0167700 Rhododendron simsii
Rhsim10G0148400 Rhododendron simsii
Sabra05G0070600 Salix brachista
Sabra06G0164500 Salix brachista
Sabra07G0066400 Salix brachista
Sabra08G0108500 Salix brachista
Sabra08G0108800 Salix brachista
Sabra10G0071000 Salix brachista
Sabra16G0085900 Salix brachista
Sabra16G0088000 Salix brachista
SalBow2G0515 Salvia bowleyana
Sc07g0001580 Simmondsia chinensis
Sc20g0004440 Simmondsia chinensis
Sc23g0003050 Simmondsia chinensis
Sed0001176 Sechium edule
Sed0003574 Sechium edule
Sed0004274 Sechium edule
Sed0007976 Sechium edule
Sed0009424 Sechium edule
Sed0009483 Sechium edule
Sed0026287 Sechium edule
Sed0028049 Sechium edule
SEGI_17616 Sequoiadendron giganteum
SEGI_34763 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30846 Striga asiatica
SGA_v2.0_scaffold126G33840 Striga asiatica
SGA_v2.0_scaffold2G01288 Striga asiatica
SGA_v2.0_scaffold94G28631 Striga asiatica
SMO353G0183 Selaginella moellendorffii
Solyc01g008160.4 Solanum lycopersicum
Solyc04g051660.3 Solanum lycopersicum
Solyc09g005740.3 Solanum lycopersicum
Solyc10g085900.3 Solanum lycopersicum
Sopen01g003700 Solanum pennellii
Sopen04g023010 Solanum pennellii
Sopen09g001630 Solanum pennellii
Sopen10g034030 Solanum pennellii
Sopen10g035280 Solanum pennellii
Sp3g16530 Schrenkiella parvula
Sp4g19720 Schrenkiella parvula
Sp5g08780 Schrenkiella parvula
Sp6g39930 Schrenkiella parvula
Sp7g36420 Schrenkiella parvula
TAR376G0274 Trochodendron aralioides
TAR622G0161 Trochodendron aralioides
TAR633G2683 Trochodendron aralioides
TAR636G3525 Trochodendron aralioides
THA.LOC104820397 Tarenaya hassleriana
THA.LOC104823250 Tarenaya hassleriana
THA.LOC104824851 Tarenaya hassleriana
Thecc.01G115400 Theobroma cacao
Thecc.02G296300 Theobroma cacao
Thecc.05G046500 Theobroma cacao
Thhalv10010528m.g Eutrema salsugineum
Thhalv10015638m.g Eutrema salsugineum
Thhalv10017513m.g Eutrema salsugineum
Thhalv10021135m.g Eutrema salsugineum
Thhalv10025635m.g Eutrema salsugineum
TPR.G11449 Trifolium pratense
TPR.G21453 Trifolium pratense
TPR.G23074 Trifolium pratense
TPR.G34754 Trifolium pratense
TPR.G40735 Trifolium pratense
TWI74G0580 Tripterygium wilfordii
TWI74G0758 Tripterygium wilfordii
TWI75G0846 Tripterygium wilfordii
TWI77G0741 Tripterygium wilfordii
unitig_0.g478 Utricularia gibba
unitig_26.g9207 Utricularia gibba
unitig_899.g14875 Utricularia gibba
vmacro12892 Vaccinium macrocarpon
VMungo0251G2173 Vigna mungo
VMungo0720G0062 Vigna mungo
VMungo1309G0645 Vigna mungo
VMungo1383G1394 Vigna mungo
Zm00001eb250790 Zea mays
Zm00001eb282930 Zea mays

User provided reference genes

Program Settings