Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p04450 Brassica napus
A04p07430 Brassica napus
A06p20380 Brassica napus
A06p27160 Brassica napus
A06p31830 Brassica napus
Aa31LG3G16910 Aethionema arabicum
Aa31LG4G16120 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.215 Anthoceros agrestis
Actinidia23225 Actinidia chinensis
Actinidia28866 Actinidia chinensis
Ah.02g122500 Amaranthus hybridus
Ah.08g221540 Amaranthus hybridus
AL5G26490 Arabidopsis lyrata
AL6G20740 Arabidopsis lyrata
AL8G42510 Arabidopsis lyrata
Aqoxy4G02506 Aquilegia oxysepala
Aqoxy6G00802 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.08H2K0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2KW6XR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2LE04G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.42WI7N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65378X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8CTX04 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IR75DK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IW0F64 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PEU4KR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T7FQKJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V11M8K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y8KTYY Arachis hypogaea
AT3G47340 Arabidopsis thaliana
AT5G10240 Arabidopsis thaliana
AT5G65010 Arabidopsis thaliana
ATR0681G173 Amborella trichopoda
ATR0753G154 Amborella trichopoda
Atru.chr3.4177 Acer truncatum
Atru.chr3.4186 Acer truncatum
Atru.chr4.65 Acer truncatum
AUR62002010 Chenopodium quinoa
AUR62003792 Chenopodium quinoa
AUR62020156 Chenopodium quinoa
BcaB01g00935 Brassica carinata
BcaB01g00939 Brassica carinata
BcaB01g05544 Brassica carinata
BcaB01g05545 Brassica carinata
BcaB02g09854 Brassica carinata
BcaB02g10699 Brassica carinata
BcaC01g01650 Brassica carinata
BcaC01g01844 Brassica carinata
BcaC01g02190 Brassica carinata
BcaC01g02191 Brassica carinata
BcaC01g02732 Brassica carinata
BcaC01g06242 Brassica carinata
BcaC02g07385 Brassica carinata
BcaC02g12356 Brassica carinata
BcaC04g23517 Brassica carinata
BcaC09g50487 Brassica carinata
BolC1t01795H Brassica oleracea
BolC2t07245H Brassica oleracea
BolC3t13025H Brassica oleracea
BolC3t18378H Brassica oleracea
BolC3t18737H Brassica oleracea
BolC3t19426H Brassica oleracea
BolC3t19428H Brassica oleracea
BolC4t22111H Brassica oleracea
BolC4t26096H Brassica oleracea
BolC7t41994H Brassica oleracea
BolC7t45414H Brassica oleracea
BolC8t48350H Brassica oleracea
BolSC21t60298H Brassica oleracea
BraA01t03157Z Brassica rapa
BraA03t09790Z Brassica rapa
BraA04t16439Z Brassica rapa
BraA06t24964Z Brassica rapa
BraA06t25113Z Brassica rapa
BraA06t25655Z Brassica rapa
BraA06t26114Z Brassica rapa
C01p18670 Brassica napus
C03p04940 Brassica napus
C03p17750 Brassica napus
C03p61180 Brassica napus
C03p64750 Brassica napus
C03p67270 Brassica napus
C03p71430 Brassica napus
C03p71440 Brassica napus
C04p04810 Brassica napus
C04p45160 Brassica napus
C07p49080 Brassica napus
C07p50140 Brassica napus
C09p07880 Brassica napus
C09p48580 Brassica napus
CAN.G18.2 Capsicum annuum
CAN.G583.5 Capsicum annuum
CANSAT01G0743 Cannabis sativa
CANSAT54G0477 Cannabis sativa
CARHR155920 Cardamine hirsuta
CARHR203060 Cardamine hirsuta
CARHR293760 Cardamine hirsuta
Carub.0005s1340 Capsella rubella
Carub.0006s0870 Capsella rubella
Carub.0008s2585 Capsella rubella
Ca_14959_v3 Cicer arietinum L.
Ca_16526_v3 Cicer arietinum L.
Ca_16528_v3 Cicer arietinum L.
Ca_26259_v3 Cicer arietinum L.
CBR_g39791 Chara braunii
CBR_g4450 Chara braunii
Cc01_g14420 Coffea canephora
Cc07_g15230 Coffea canephora
CDE04G2867 Ceratophyllum demersum
CDE08G0432 Ceratophyllum demersum
CDE10G0138 Ceratophyllum demersum
CDE12G0346 Ceratophyllum demersum
Cfa002664 Carpinus fangiana
Cfa011720 Carpinus fangiana
Ciclev10025269m.g Citrus clementina
Ciclev10028078m.g Citrus clementina
CiPaw.03G141800 Carya illinoinensis
CiPaw.04G099400 Carya illinoinensis
CiPaw.13G075400 Carya illinoinensis
CiPaw.14G057600 Carya illinoinensis
ClCG01G018770 Citrullus lanatus
ClCG02G019460 Citrullus lanatus
ClCG08G009820 Citrullus lanatus
ClCG08G009830 Citrullus lanatus
ClCG08G009860 Citrullus lanatus
COL.COLO4_00531 Corchorus olitorius
COL.COLO4_09963 Corchorus olitorius
COL.COLO4_19191 Corchorus olitorius
Cpa.g.sc1369.3 Carica papaya
Cpa.g.sc2.434 Carica papaya
Cpa.g.sc2307.1 Carica papaya
Cre01.g004300 Chlamydomonas reinhardtii
CsaV3_6G016090 Cucumis sativus L.
CsaV3_6G031950 Cucumis sativus L.
CsaV3_6G045440 Cucumis sativus L.
CSS0022909 Camellia sinensis var. sinensis
CSS0032369 Camellia sinensis var. sinensis
CSS0044161 Camellia sinensis var. sinensis
DCAR_005884 Daucus carota
DCAR_007364 Daucus carota
DCAR_015666 Daucus carota
Dinv03093 Davidia involucrata
Dinv13187 Davidia involucrata
Dinv21910 Davidia involucrata
Dinv28660 Davidia involucrata
Duzib147G0496 Durio zibethinus
Duzib150G1655 Durio zibethinus
Duzib168G1826 Durio zibethinus
Duzib170G0147 Durio zibethinus
ECA236G1528 Erigeron canadensis
ECA247G2550 Erigeron canadensis
ECA248G3094 Erigeron canadensis
EL10Ac6g15103 Beta vulgaris
EL10Ac7g16195 Beta vulgaris
EL10Ac9g21189 Beta vulgaris
Eucgr.B02239 Eucalyptus grandis
Eucgr.C03461 Eucalyptus grandis
Eucgr.E01055 Eucalyptus grandis
Eucgr.I00431 Eucalyptus grandis
FAN03G3502 Fragaria x ananassa
FAN11G1054 Fragaria x ananassa
FAN16G2161 Fragaria x ananassa
FAN19G1453 Fragaria x ananassa
FAN19G1495 Fragaria x ananassa
FAN19G3062 Fragaria x ananassa
FAN21G2284 Fragaria x ananassa
FAN23G0102 Fragaria x ananassa
FAN25G0618 Fragaria x ananassa
FAN26G2939 Fragaria x ananassa
FvH4_1g20910 Fragaria vesca
FvH4_1g29202 Fragaria vesca
FvH4_3g38970 Fragaria vesca
Glyma.02G228100 Glycine max
Glyma.11G170300 Glycine max
Glyma.11G171400 Glycine max
Glyma.11G240200 Glycine max
Glyma.14G195000 Glycine max
Glyma.18G017200 Glycine max
Glyma.18G061100 Glycine max
Gohir.A05G087200 Gossypium hirsutum
Gohir.A05G087300 Gossypium hirsutum
Gohir.A07G104800 Gossypium hirsutum
Gohir.A09G088900 Gossypium hirsutum
Gohir.A09G089100 Gossypium hirsutum
Gohir.A12G087900 Gossypium hirsutum
Gohir.A13G223900 Gossypium hirsutum
Gohir.D05G088300 Gossypium hirsutum
Gohir.D07G108800 Gossypium hirsutum
Gohir.D09G088800 Gossypium hirsutum
Gohir.D09G089000 Gossypium hirsutum
Gohir.D09G089100 Gossypium hirsutum
Gohir.D12G086000 Gossypium hirsutum
Gohir.D13G228700 Gossypium hirsutum
Gorai.001G117000 Gossypium raimondii
Gorai.006G105200 Gossypium raimondii
Gorai.006G105400 Gossypium raimondii
Gorai.008G096300 Gossypium raimondii
Gorai.009G090500 Gossypium raimondii
Gorai.013G259500 Gossypium raimondii
GSVIVG01002468001 Vitis vinifera
GSVIVG01024713001 Vitis vinifera
HanXRQChr05g0135841 Helianthus annuus
HanXRQChr08g0229331 Helianthus annuus
HanXRQChr08g0237131 Helianthus annuus
HanXRQChr13g0406041 Helianthus annuus
HanXRQChr14g0430881 Helianthus annuus
HanXRQChr15g0469831 Helianthus annuus
HanXRQChr16g0518351 Helianthus annuus
Haze_24354 Corylus avellana
Haze_24933 Corylus avellana
Haze_26931 Corylus avellana
Hma1.2p1_0013F.1_g008770 Hydrangea macrophylla
Hma1.2p1_0146F.1_g065620 Hydrangea macrophylla
Hma1.2p1_0293F.1_g116360 Hydrangea macrophylla
Hma1.2p1_0449F.1_g155370 Hydrangea macrophylla
Hma1.2p1_1285F.1_g272930 Hydrangea macrophylla
Hma1.2p1_1285F.1_g272935 Hydrangea macrophylla
HPP92_015416 Vanilla planifolia
HPP92_020319 Vanilla planifolia
HPP92_020333 Vanilla planifolia
HPP92_026980 Vanilla planifolia
Hund13625 Selenicereus undatus
Hund16284 Selenicereus undatus
Lalb_Chr08g0231061 Lupinus albus
Lalb_Chr10g0103401 Lupinus albus
Lalb_Chr11g0075371 Lupinus albus
Lalb_Chr15g0083001 Lupinus albus
Lalb_Chr17g0345171 Lupinus albus
Lj2A1084T15 Lonicera japonica
Lj4A891G50 Lonicera japonica
Lj6g0020296 Lotus japonicus
Lj6g0027177 Lotus japonicus
LjContig00141g0013956 Lotus japonicus
Lsat_1_v5_gn_3_6421 Lactuca sativa
Lsat_1_v5_gn_5_45700 Lactuca sativa
Lsat_1_v5_gn_9_19881 Lactuca sativa
Manes.02G212800 Manihot esculenta
Manes.12G135000 Manihot esculenta
Mapoly0174s0014 Marchantia polymorpha
MBI02_g08725_MAGBIO Magnolia biondii
MBI03_g07323_MAGBIO Magnolia biondii
MBI05_g15583_MAGBIO Magnolia biondii
MBI14_g40934_MAGBIO Magnolia biondii
MBI15_g42773_MAGBIO Magnolia biondii
MBI15_g42774_MAGBIO Magnolia biondii
MBI15_g45252_MAGBIO Magnolia biondii
MCO01G357 Micromonas commoda
MCO07G128 Micromonas commoda
MD01G1029700 Malus domestica
MD03G1066000 Malus domestica
MD11G1070800 Malus domestica
MD15G1324200 Malus domestica
MD16G1276100 Malus domestica
Medtr3g087220 Medicago truncatula
Medtr3g464580 Medicago truncatula
Medtr5g069310 Medicago truncatula
Medtr5g071360 Medicago truncatula
MELO3C007757.2 Cucumis melo
MELO3C011485.2 Cucumis melo
MELO3C026828.2 Cucumis melo
Migut.L00121 Erythranthe guttata
Migut.N00774 Erythranthe guttata
MSTRG.3780 Avicennia marina
Nitab4.5_0000102g0010 Nicotiana tabacum
Nitab4.5_0000104g0040 Nicotiana tabacum
Nitab4.5_0000839g0040 Nicotiana tabacum
Nitab4.5_0000839g0060 Nicotiana tabacum
Nitab4.5_0001371g0010 Nicotiana tabacum
Nitab4.5_0002667g0070 Nicotiana tabacum
Nitab4.5_0003629g0030 Nicotiana tabacum
Nitab4.5_0006148g0080 Nicotiana tabacum
Nitab4.5_0008156g0030 Nicotiana tabacum
Nitab4.5_0008490g0020 Nicotiana tabacum
Nitab4.5_0026567g0010 Nicotiana tabacum
Nn1g02304 Nelumbo nucifera
Nn1g05343 Nelumbo nucifera
Nn1g05345 Nelumbo nucifera
Nn2g10882 Nelumbo nucifera
Nn2g13157 Nelumbo nucifera
Nn2g14498 Nelumbo nucifera
Nn5g26965 Nelumbo nucifera
Nn5g30125 Nelumbo nucifera
Nn6g33782 Nelumbo nucifera
Nn6g35580 Nelumbo nucifera
Oeu001785.1 Olea europaea
Os03g0291500 Oryza sativa ssp. japonica
Os06g0265000 Oryza sativa ssp. japonica
Peaxi162Scf00212g00516 Petunia axillaris
Peaxi162Scf00540g00013 Petunia axillaris
Peaxi162Scf00540g00123 Petunia axillaris
Peaxi162Scf00659g00003 Petunia axillaris
PGR004G0159 Punica granatum
PGR010G0005 Punica granatum
PGR119G0367 Punica granatum
PGSC0003DMG400004170 Solanum tuberosum
Phvul.001G252200 Phaseolus vulgaris
Phvul.006G069300 Phaseolus vulgaris
Phvul.008G259900 Phaseolus vulgaris
Potri.001G278400 Populus trichocarpa
Potri.005G075700 Populus trichocarpa
Potri.009G072900 Populus trichocarpa
Pp3c16_1480 Physcomitrium patens
Pp3c20_17620 Physcomitrium patens
Pp3c24_13160 Physcomitrium patens
Pp3c5_13310 Physcomitrium patens
PRCOL_00000567 Prasinoderma coloniale
PRCOL_00000867 Prasinoderma coloniale
PRCOL_00001879 Prasinoderma coloniale
PRCOL_00005220 Prasinoderma coloniale
Prupe.6G054800 Prunus persica
Prupe.6G186800 Prunus persica
Psat2g056920 Pisum sativum
Psat5g090040 Pisum sativum
Psat5g153000 Pisum sativum
PSO017G2459 Papaver somniferum
PSO339G2151 Papaver somniferum
PSO339G4829 Papaver somniferum
PSO384G1341 Papaver somniferum
PSO541G0764 Papaver somniferum
PSO781G0258 Papaver somniferum
PSO801G0392 Papaver somniferum
QL01p038864 Quercus lobata
QL06p049538 Quercus lobata
RcHm_v2.0_Chr2g0113551 Rosa chinensis
RcHm_v2.0_Chr2g0113561 Rosa chinensis
RcHm_v2.0_Chr2g0113591 Rosa chinensis
RcHm_v2.0_Chr2g0113641 Rosa chinensis
RcHm_v2.0_Chr2g0113651 Rosa chinensis
RcHm_v2.0_Chr2g0113711 Rosa chinensis
RcHm_v2.0_Chr2g0113721 Rosa chinensis
RcHm_v2.0_Chr2g0113831 Rosa chinensis
RcHm_v2.0_Chr2g0113841 Rosa chinensis
RcHm_v2.0_Chr2g0113851 Rosa chinensis
RcHm_v2.0_Chr2g0113911 Rosa chinensis
RcHm_v2.0_Chr2g0113941 Rosa chinensis
RcHm_v2.0_Chr2g0113991 Rosa chinensis
RcHm_v2.0_Chr2g0114001 Rosa chinensis
RcHm_v2.0_Chr2g0114041 Rosa chinensis
RcHm_v2.0_Chr2g0114051 Rosa chinensis
RcHm_v2.0_Chr2g0114071 Rosa chinensis
RcHm_v2.0_Chr2g0114081 Rosa chinensis
RcHm_v2.0_Chr2g0114091 Rosa chinensis
RcHm_v2.0_Chr2g0114101 Rosa chinensis
RcHm_v2.0_Chr2g0114111 Rosa chinensis
RcHm_v2.0_Chr2g0114131 Rosa chinensis
RcHm_v2.0_Chr2g0114141 Rosa chinensis
RcHm_v2.0_Chr2g0114151 Rosa chinensis
RcHm_v2.0_Chr2g0114261 Rosa chinensis
RcHm_v2.0_Chr2g0114271 Rosa chinensis
RcHm_v2.0_Chr2g0114291 Rosa chinensis
RcHm_v2.0_Chr2g0124021 Rosa chinensis
RcHm_v2.0_Chr2g0124041 Rosa chinensis
RcHm_v2.0_Chr5g0070221 Rosa chinensis
Rhsim01G0237600 Rhododendron simsii
Rhsim01G0237700 Rhododendron simsii
Rhsim10G0163100 Rhododendron simsii
Sabra05G0062200 Salix brachista
Sabra07G0077000 Salix brachista
Sabra09G0055100 Salix brachista
Sabra16G0172300 Salix brachista
SalBow2G2063 Salvia bowleyana
SalBow5G0560 Salvia bowleyana
SalBow5G0843 Salvia bowleyana
Sc03g0002080 Simmondsia chinensis
Sc06g0008490 Simmondsia chinensis
Sc16g0005050 Simmondsia chinensis
Sc21g0006470 Simmondsia chinensis
Sed0001050 Sechium edule
Sed0008041 Sechium edule
SEGI_14003 Sequoiadendron giganteum
SEGI_23332 Sequoiadendron giganteum
SEGI_24247 Sequoiadendron giganteum
SEGI_33651 Sequoiadendron giganteum
SEGI_33975 Sequoiadendron giganteum
SEGI_38186 Sequoiadendron giganteum
SEGI_40602 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30128 Striga asiatica
SGA_v2.0_scaffold47G17785 Striga asiatica
SGA_v2.0_scaffold80G25727 Striga asiatica
SHI19185 Sapria himalayana
SHI29424 Sapria himalayana
SHI29425 Sapria himalayana
SHI29427 Sapria himalayana
SMO356G0698 Selaginella moellendorffii
Solyc04g055200.3 Solanum lycopersicum
Solyc06g007180.3 Solanum lycopersicum
Sopen04g025060 Solanum pennellii
Sopen06g002150 Solanum pennellii
Sp2g28090 Schrenkiella parvula
Sp5g14540 Schrenkiella parvula
Sp6g33170 Schrenkiella parvula
TAR114G0001 Trochodendron aralioides
TAR381G0593 Trochodendron aralioides
TAR633G0977 Trochodendron aralioides
TAR633G1514 Trochodendron aralioides
TAR633G1905 Trochodendron aralioides
TAR636G2474 Trochodendron aralioides
THA.LOC104798995 Tarenaya hassleriana
THA.LOC104810706 Tarenaya hassleriana
THA.LOC104819300 Tarenaya hassleriana
Thecc.01G101600 Theobroma cacao
Thecc.09G298800 Theobroma cacao
Thhalv10003890m.g Eutrema salsugineum
Thhalv10010235m.g Eutrema salsugineum
Thhalv10013088m.g Eutrema salsugineum
TPR.G17849 Trifolium pratense
TPR.G27814 Trifolium pratense
TPR.G29022 Trifolium pratense
TWI31G0660 Tripterygium wilfordii
TWI53G1905 Tripterygium wilfordii
TWI79G0852 Tripterygium wilfordii
unitig_22.g5208 Utricularia gibba
unitig_22.g5209 Utricularia gibba
unitig_748.g8653 Utricularia gibba
vmacro12957 Vaccinium macrocarpon
vmacro14604 Vaccinium macrocarpon
VMungo0540G0522 Vigna mungo
VMungo0647G0388 Vigna mungo
VMungo1383G2908 Vigna mungo
Zm00001eb013430 Zea mays
Zm00001eb036060 Zea mays
Zm00001eb036070 Zea mays
Zm00001eb103520 Zea mays
Zm00001eb103530 Zea mays
Zm00001eb163240 Zea mays
Zm00001eb349970 Zea mays
Zm00001eb349980 Zea mays
Zm00001eb380080 Zea mays
Zm00001eb396990 Zea mays

User provided reference genes

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