Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17100 Brassica napus
A03p30830 Brassica napus
A03p34130 Brassica napus
A04p23250 Brassica napus
A08p24740 Brassica napus
A09p36470 Brassica napus
Aa31LG10G6840 Aethionema arabicum
Aa31LG5G11320 Aethionema arabicum
Aa31LG5G2440 Aethionema arabicum
Aa31LG5G6240 Aethionema arabicum
Aa31LG6G5610 Aethionema arabicum
Actinidia00752 Actinidia chinensis
Actinidia11479 Actinidia chinensis
Actinidia11637 Actinidia chinensis
Actinidia21112 Actinidia chinensis
Actinidia23150 Actinidia chinensis
Actinidia29008 Actinidia chinensis
Actinidia34507 Actinidia chinensis
Ah.02g124680 Amaranthus hybridus
Ah.10g036250 Amaranthus hybridus
Ah.15g089790 Amaranthus hybridus
AL1G43950 Arabidopsis lyrata
AL4G25410 Arabidopsis lyrata
AL6G10060 Arabidopsis lyrata
AL6G50130 Arabidopsis lyrata
Aqoxy2G03332 Aquilegia oxysepala
Aqoxy4G03312 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3P0NHV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8827H6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8KGI2U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A6FH4P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CUH2ZL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IHW9TM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MV5JUR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MWWX64 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XW7UYZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YDRJ1I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YI62HX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YL1JK7 Arachis hypogaea
AT1G30050 Arabidopsis thaliana
AT2G30530 Arabidopsis thaliana
AT4G02800 Arabidopsis thaliana
AT5G01970 Arabidopsis thaliana
ATR0594G182 Amborella trichopoda
ATR1127G080 Amborella trichopoda
Atru.chr10.2352 Acer truncatum
Atru.chr5.1436 Acer truncatum
Atru.chr8.59 Acer truncatum
Atru.chr8.60 Acer truncatum
AUR62006453 Chenopodium quinoa
AUR62012297 Chenopodium quinoa
AUR62022936 Chenopodium quinoa
AUR62029805 Chenopodium quinoa
AUR62036829 Chenopodium quinoa
AUR62043134 Chenopodium quinoa
BcaB01g04091 Brassica carinata
BcaB01g04096 Brassica carinata
BcaB03g12191 Brassica carinata
BcaB03g13845 Brassica carinata
BcaB06g28373 Brassica carinata
BcaB07g32605 Brassica carinata
BcaC01g00152 Brassica carinata
BcaC01g06006 Brassica carinata
BcaC01g06007 Brassica carinata
BcaC01g06728 Brassica carinata
BcaC05g27021 Brassica carinata
BcaC06g35489 Brassica carinata
BcaC06g35490 Brassica carinata
BolC2t10016H Brassica oleracea
BolC3t14394H Brassica oleracea
BolC3t16045H Brassica oleracea
BolC3t19891H Brassica oleracea
BolC5t31603H Brassica oleracea
BolC7t42038H Brassica oleracea
BraA03t09384Z Brassica rapa
BraA03t10986Z Brassica rapa
BraA03t12261Z Brassica rapa
BraA04t17852Z Brassica rapa
BraA08t34428Z Brassica rapa
BraA09t39169Z Brassica rapa
C02p39880 Brassica napus
C03p20200 Brassica napus
C03p37520 Brassica napus
C03p76340 Brassica napus
C05p28850 Brassica napus
C07p15470 Brassica napus
C07p15480 Brassica napus
CAN.G1006.13 Capsicum annuum
CAN.G1754.1 Capsicum annuum
CAN.G369.6 Capsicum annuum
CANSAT11G0070 Cannabis sativa
CANSAT11G1468 Cannabis sativa
CANSAT25G3505 Cannabis sativa
CANSAT54G1469 Cannabis sativa
CARHR029350 Cardamine hirsuta
CARHR123980 Cardamine hirsuta
CARHR212320 Cardamine hirsuta
CARHR251170 Cardamine hirsuta
Carub.0001s2828 Capsella rubella
Carub.0004s1169 Capsella rubella
Carub.0006s3426 Capsella rubella
Carub.0024s0007 Capsella rubella
Ca_02641_v3 Cicer arietinum L.
Ca_07796_v3 Cicer arietinum L.
Ca_08582_v3 Cicer arietinum L.
Ca_15085_v3 Cicer arietinum L.
Ca_23106_v3 Cicer arietinum L.
Ca_28099_v3 Cicer arietinum L.
CBR_g3874 Chara braunii
Cc01_g15500 Coffea canephora
Cc01_g19480 Coffea canephora
Cc06_g00170 Coffea canephora
CDE06G2502 Ceratophyllum demersum
CDE07G0987 Ceratophyllum demersum
CDE11G1095 Ceratophyllum demersum
CDE12G0681 Ceratophyllum demersum
Cfa006140 Carpinus fangiana
Cfa011857 Carpinus fangiana
Cfa016996 Carpinus fangiana
Ciclev10001288m.g Citrus clementina
Ciclev10011688m.g Citrus clementina
Ciclev10021028m.g Citrus clementina
CiPaw.07G091600 Carya illinoinensis
CiPaw.09G223700 Carya illinoinensis
CiPaw.13G060300 Carya illinoinensis
CiPaw.14G048800 Carya illinoinensis
ClCG02G018960 Citrullus lanatus
ClCG04G006130 Citrullus lanatus
ClCG07G000260 Citrullus lanatus
COL.COLO4_06160 Corchorus olitorius
COL.COLO4_09097 Corchorus olitorius
COL.COLO4_11228 Corchorus olitorius
Cpa.g.sc0.61 Carica papaya
Cpa.g.sc2.265 Carica papaya
Cpa.g.sc370.2 Carica papaya
Cpa.g.sc370.3 Carica papaya
CsaV3_4G027430 Cucumis sativus L.
CsaV3_6G013230 Cucumis sativus L.
CsaV3_6G037130 Cucumis sativus L.
CSS0001206 Camellia sinensis var. sinensis
CSS0005926 Camellia sinensis var. sinensis
CSS0010609 Camellia sinensis var. sinensis
CSS0025074 Camellia sinensis var. sinensis
CSS0028731 Camellia sinensis var. sinensis
CSS0033976 Camellia sinensis var. sinensis
CSS0044389 Camellia sinensis var. sinensis
CSS0048809 Camellia sinensis var. sinensis
DCAR_002734 Daucus carota
DCAR_015323 Daucus carota
DCAR_018586 Daucus carota
DCAR_018645 Daucus carota
Dinv02738 Davidia involucrata
Dinv12293 Davidia involucrata
Dinv16936 Davidia involucrata
Dinv25370 Davidia involucrata
Dinv28757 Davidia involucrata
Dinv30703 Davidia involucrata
Dinv32935 Davidia involucrata
Dinv34751 Davidia involucrata
Duzib138G0329 Durio zibethinus
Duzib151G0381 Durio zibethinus
Duzib168G0243 Durio zibethinus
Duzib211G0525 Durio zibethinus
Duzib212G0118 Durio zibethinus
ECA236G1130 Erigeron canadensis
ECA236G4684 Erigeron canadensis
ECA247G1310 Erigeron canadensis
ECA247G2700 Erigeron canadensis
ECA248G2782 Erigeron canadensis
EL10Ac2g04888 Beta vulgaris
EL10Ac7g16113 Beta vulgaris
EL10Ac7g17141 Beta vulgaris
Eucgr.A00820 Eucalyptus grandis
Eucgr.B04034 Eucalyptus grandis
Eucgr.H01480 Eucalyptus grandis
FAN02G0196 Fragaria x ananassa
FAN05G1623 Fragaria x ananassa
FAN09G0473 Fragaria x ananassa
FAN11G3068 Fragaria x ananassa
FAN14G0581 Fragaria x ananassa
FAN15G0241 Fragaria x ananassa
FAN16G0166 Fragaria x ananassa
FAN20G1688 Fragaria x ananassa
FAN21G1420 Fragaria x ananassa
FAN24G2448 Fragaria x ananassa
FAN25G1206 Fragaria x ananassa
FAN27G1669 Fragaria x ananassa
FvH4_2g23580 Fragaria vesca
FvH4_3g41090 Fragaria vesca
FvH4_6g09370 Fragaria vesca
Glyma.03G001100 Glycine max
Glyma.03G153600 Glycine max
Glyma.09G271300 Glycine max
Glyma.11G200700 Glycine max
Glyma.16G221500 Glycine max
Glyma.18G050100 Glycine max
Glyma.18G218000 Glycine max
Glyma.19G156000 Glycine max
Gohir.A02G001000 Gossypium hirsutum
Gohir.A03G087200 Gossypium hirsutum
Gohir.A08G067300 Gossypium hirsutum
Gohir.A13G234900 Gossypium hirsutum
Gohir.D02G001300 Gossypium hirsutum
Gohir.D08G075800 Gossypium hirsutum
Gohir.D13G240600 Gossypium hirsutum
Gorai.004G080100 Gossypium raimondii
Gorai.005G001800 Gossypium raimondii
Gorai.005G129000 Gossypium raimondii
Gorai.013G271400 Gossypium raimondii
GSVIVG01011083001 Vitis vinifera
GSVIVG01024531001 Vitis vinifera
GSVIVG01029860001 Vitis vinifera
HanXRQChr01g0000371 Helianthus annuus
HanXRQChr08g0231171 Helianthus annuus
HanXRQChr10g0282651 Helianthus annuus
HanXRQChr10g0286191 Helianthus annuus
HanXRQChr10g0292881 Helianthus annuus
HanXRQChr11g0323341 Helianthus annuus
HanXRQChr11g0323351 Helianthus annuus
HanXRQChr11g0345041 Helianthus annuus
HanXRQChr15g0464541 Helianthus annuus
Haze_04710 Corylus avellana
Haze_21208 Corylus avellana
Haze_24491 Corylus avellana
Hma1.2p1_0161F.1_g072010 Hydrangea macrophylla
Hma1.2p1_0161F.1_g072020 Hydrangea macrophylla
Hma1.2p1_0174F.1_g076590 Hydrangea macrophylla
Hma1.2p1_0257F.1_g103420 Hydrangea macrophylla
HPP92_000778 Vanilla planifolia
HPP92_003484 Vanilla planifolia
HPP92_017908 Vanilla planifolia
HPP92_018080 Vanilla planifolia
HPP92_026803 Vanilla planifolia
HPP92_026882 Vanilla planifolia
Hund03684 Selenicereus undatus
Hund15886 Selenicereus undatus
Hund17993 Selenicereus undatus
Lalb_Chr01g0020161 Lupinus albus
Lalb_Chr07g0195821 Lupinus albus
Lalb_Chr07g0195831 Lupinus albus
Lalb_Chr15g0085631 Lupinus albus
Lalb_Chr18g0054051 Lupinus albus
Lalb_Chr19g0123891 Lupinus albus
Lalb_Chr20g0117251 Lupinus albus
Lj1g0012332 Lotus japonicus
Lj1g0024770 Lotus japonicus
Lj2A1172T37 Lonicera japonica
Lj2A56T89 Lonicera japonica
Lj2C1105G5 Lonicera japonica
Lj3A939T99 Lonicera japonica
Lj3g0006167 Lotus japonicus
Lj6g0003087 Lotus japonicus
Lsat_1_v5_gn_5_151340 Lactuca sativa
Lsat_1_v5_gn_8_108461 Lactuca sativa
Lsat_1_v5_gn_8_98961 Lactuca sativa
Lsat_1_v5_gn_9_15381 Lactuca sativa
Lsat_1_v5_gn_9_3740 Lactuca sativa
Lsat_1_v5_gn_9_39801 Lactuca sativa
Manes.01G207700 Manihot esculenta
Manes.05G076400 Manihot esculenta
Manes.08G167700 Manihot esculenta
Manes.09G121300 Manihot esculenta
Manes.18G124700 Manihot esculenta
Mapoly0007s0099 Marchantia polymorpha
MBI03_g17684_MAGBIO Magnolia biondii
MBI15_g31030_MAGBIO Magnolia biondii
MBI17_g12497_MAGBIO Magnolia biondii
MD03G1047600 Malus domestica
MD03G1265000 Malus domestica
MD03G1265300 Malus domestica
MD04G1178200 Malus domestica
MD11G1050100 Malus domestica
MD11G1285200 Malus domestica
MD12G1193800 Malus domestica
MD16G1228100 Malus domestica
Medtr3g062850 Medicago truncatula
Medtr7g074150 Medicago truncatula
Medtr7g094870 Medicago truncatula
Medtr8g005120 Medicago truncatula
MELO3C019592.2 Cucumis melo
MELO3C025262.2 Cucumis melo
Migut.D00295 Erythranthe guttata
Migut.D00801 Erythranthe guttata
Migut.L02049 Erythranthe guttata
MSTRG.17933 Avicennia marina
MSTRG.18233 Avicennia marina
MSTRG.18926 Avicennia marina
MSTRG.21269 Avicennia marina
Nitab4.5_0000195g0090 Nicotiana tabacum
Nitab4.5_0000295g0220 Nicotiana tabacum
Nitab4.5_0001629g0050 Nicotiana tabacum
Nitab4.5_0003037g0130 Nicotiana tabacum
Nitab4.5_0003425g0010 Nicotiana tabacum
Nitab4.5_0003559g0040 Nicotiana tabacum
Nitab4.5_0004009g0030 Nicotiana tabacum
Nitab4.5_0006390g0050 Nicotiana tabacum
Nn1g02226 Nelumbo nucifera
Nn5g26785 Nelumbo nucifera
Oeu006215.1 Olea europaea
Oeu011400.1 Olea europaea
Oeu023893.1 Olea europaea
Oeu023894.1 Olea europaea
Oeu039291.1 Olea europaea
Oeu047877.1 Olea europaea
Os04g0228100 Oryza sativa ssp. japonica
Os05g0315200 Oryza sativa ssp. japonica
Os05g0481700 Oryza sativa ssp. japonica
Os11g0118800 Oryza sativa ssp. japonica
Os12g0118200 Oryza sativa ssp. japonica
Peaxi162Scf00161g01217 Petunia axillaris
Peaxi162Scf00374g00418 Petunia axillaris
Peaxi162Scf00455g00139 Petunia axillaris
Peaxi162Scf00732g00142 Petunia axillaris
PGR031G0542 Punica granatum
PGR102G2620 Punica granatum
PGR119G1809 Punica granatum
PGSC0003DMG400014626 Solanum tuberosum
PGSC0003DMG400027697 Solanum tuberosum
PGSC0003DMG400027708 Solanum tuberosum
PGSC0003DMG400045815 Solanum tuberosum
Phvul.001G151000 Phaseolus vulgaris
Phvul.006G081100 Phaseolus vulgaris
Phvul.008G078800 Phaseolus vulgaris
Phvul.010G059700 Phaseolus vulgaris
Phvul.010G101700 Phaseolus vulgaris
Potri.002G053100 Populus trichocarpa
Potri.005G209400 Populus trichocarpa
Potri.006G111900 Populus trichocarpa
Potri.013G160100 Populus trichocarpa
Potri.016G141300 Populus trichocarpa
Potri.019G132300 Populus trichocarpa
Pp3c7_3170 Physcomitrium patens
Prupe.6G038600 Prunus persica
Prupe.6G298200 Prunus persica
Prupe.8G241100 Prunus persica
Psat2g191080 Pisum sativum
Psat3g064320 Pisum sativum
Psat3g117760 Pisum sativum
Psat5g145760 Pisum sativum
PSO339G3080 Papaver somniferum
PSO384G1770 Papaver somniferum
PSO675G8044 Papaver somniferum
PSO724G0714 Papaver somniferum
PSO724G0795 Papaver somniferum
PSO729G0027 Papaver somniferum
PSO732G0450 Papaver somniferum
QL01p023736 Quercus lobata
QL07p031371 Quercus lobata
QL12p021897 Quercus lobata
RcHm_v2.0_Chr3g0459761 Rosa chinensis
RcHm_v2.0_Chr5g0073821 Rosa chinensis
RcHm_v2.0_Chr6g0291051 Rosa chinensis
Rhsim01G0244600 Rhododendron simsii
Rhsim01G0274700 Rhododendron simsii
Rhsim05G0233800 Rhododendron simsii
Rhsim13G0024800 Rhododendron simsii
Sabra02G0043200 Salix brachista
Sabra04G0157700 Salix brachista
Sabra05G0159500 Salix brachista
Sabra06G0087200 Salix brachista
Sabra13G0128100 Salix brachista
Sabra19G0128800 Salix brachista
Sc17g0004120 Simmondsia chinensis
Sc20g0007280 Simmondsia chinensis
Sc20g0007590 Simmondsia chinensis
Sc21g0004820 Simmondsia chinensis
Sed0002986 Sechium edule
Sed0014837 Sechium edule
Sed0018445 Sechium edule
Sed0018923 Sechium edule
Sed0022486 Sechium edule
SEGI_28951 Sequoiadendron giganteum
SGA_v2.0_scaffold120G33003 Striga asiatica
SGA_v2.0_scaffold1G00472 Striga asiatica
SGA_v2.0_scaffold54G19457 Striga asiatica
SHI12952 Sapria himalayana
SHI27802 Sapria himalayana
SMO198G0079 Selaginella moellendorffii
SMO201G0090 Selaginella moellendorffii
SMO340G0082 Selaginella moellendorffii
Solyc09g055590.3 Solanum lycopersicum
Solyc09g055670.1 Solanum lycopersicum
Solyc10g074800.3 Solanum lycopersicum
Sopen06g003760 Solanum pennellii
Sopen09g018440 Solanum pennellii
Sopen10g027290 Solanum pennellii
Sp1g25920 Schrenkiella parvula
Sp4g13080 Schrenkiella parvula
Sp6g02830 Schrenkiella parvula
Sp6g41210 Schrenkiella parvula
TAR362G0545 Trochodendron aralioides
TAR623G0687 Trochodendron aralioides
TAR633G0327 Trochodendron aralioides
TAR633G1795 Trochodendron aralioides
THA.LOC104806258 Tarenaya hassleriana
THA.LOC104806656 Tarenaya hassleriana
THA.LOC104815943 Tarenaya hassleriana
THA.LOC104826259 Tarenaya hassleriana
Thecc.01G279400 Theobroma cacao
Thecc.04G146500 Theobroma cacao
Thecc.09G365700 Theobroma cacao
Thhalv10007824m.g Eutrema salsugineum
Thhalv10013951m.g Eutrema salsugineum
Thhalv10016861m.g Eutrema salsugineum
Thhalv10028780m.g Eutrema salsugineum
TPR.G13818 Trifolium pratense
TPR.G24317 Trifolium pratense
TPR.G30735 Trifolium pratense
TPR.G364 Trifolium pratense
TPR.G9918 Trifolium pratense
TWI53G1359 Tripterygium wilfordii
TWI59G0326 Tripterygium wilfordii
TWI74G1626 Tripterygium wilfordii
TWI79G0786 Tripterygium wilfordii
unitig_26.g8965 Utricularia gibba
unitig_52.g16840 Utricularia gibba
vmacro02570 Vaccinium macrocarpon
vmacro14654 Vaccinium macrocarpon
vmacro14922 Vaccinium macrocarpon
vmacro20396 Vaccinium macrocarpon
VMungo0331G1579 Vigna mungo
VMungo0540G1620 Vigna mungo
VMungo1383G1362 Vigna mungo
VMungo1383G3634 Vigna mungo
Zm00001eb086650 Zea mays
Zm00001eb163810 Zea mays
Zm00001eb290930 Zea mays
Zm00001eb350740 Zea mays
Zm00001eb352110 Zea mays

User provided reference genes

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