Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p13680 Brassica napus
A05p08820 Brassica napus
A05p18290 Brassica napus
A06p01040 Brassica napus
A06p01050 Brassica napus
Aa31LG10G1770 Aethionema arabicum
Aa31LG1G12700 Aethionema arabicum
Aa31LG5G22250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1276 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2648 Anthoceros agrestis
Actinidia03713 Actinidia chinensis
Actinidia06752 Actinidia chinensis
Actinidia16421 Actinidia chinensis
Actinidia22437 Actinidia chinensis
Actinidia22438 Actinidia chinensis
Actinidia40016 Actinidia chinensis
Ah.08g211770 Amaranthus hybridus
Ah.10g032840 Amaranthus hybridus
AL1G61880 Arabidopsis lyrata
AL4G33260 Arabidopsis lyrata
AL8G37330 Arabidopsis lyrata
Aqoxy1G01183 Aquilegia oxysepala
Aqoxy2G01802 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AMY2XD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B29LWX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BR4GJX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CHB2FZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EZM0ZQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FTPE9D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GDU9ZK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q0RQ24 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W9RZHZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z5DA2B Arachis hypogaea
AT1G53390 Arabidopsis thaliana
AT2G37010 Arabidopsis thaliana
AT5G60740 Arabidopsis thaliana
ATR0680G074 Amborella trichopoda
Atru.chr12.819 Acer truncatum
Atru.chr3.3587 Acer truncatum
Atru.chr8.1836 Acer truncatum
AUR62020747 Chenopodium quinoa
AUR62022773 Chenopodium quinoa
AUR62027966 Chenopodium quinoa
AUR62040459 Chenopodium quinoa
AUR62041980 Chenopodium quinoa
BcaB01g04671 Brassica carinata
BcaB02g09310 Brassica carinata
BcaB02g10922 Brassica carinata
BcaB07g33333 Brassica carinata
BcaB07g33334 Brassica carinata
BcaC01g06553 Brassica carinata
BcaC02g11826 Brassica carinata
BcaC08g43525 Brassica carinata
BcaC08g43527 Brassica carinata
BcaC08g44087 Brassica carinata
BolC3t13738H Brassica oleracea
BolC3t14031H Brassica oleracea
BolC4t22687H Brassica oleracea
BolC6t35990H Brassica oleracea
BolC6t35996H Brassica oleracea
BolC6t36668H Brassica oleracea
BraA03t10672Z Brassica rapa
BraA05t19849Z Brassica rapa
BraA05t20723Z Brassica rapa
BraA06t23332Z Brassica rapa
BraA06t23333Z Brassica rapa
C03p12720 Brassica napus
C03p16040 Brassica napus
C04p10940 Brassica napus
C06p09150 Brassica napus
C06p09190 Brassica napus
C06p14890 Brassica napus
CAN.G13049.1 Capsicum annuum
CAN.G1524.12 Capsicum annuum
CAN.G1524.16 Capsicum annuum
CAN.G2109.3 Capsicum annuum
CAN.G2377.2 Capsicum annuum
CAN.G309.38 Capsicum annuum
CAN.G335.20 Capsicum annuum
CAN.G482.3 Capsicum annuum
CAN.G622.5 Capsicum annuum
CAN.G922.1 Capsicum annuum
CANSAT54G0054 Cannabis sativa
CANSAT56G2467 Cannabis sativa
CARHR043600 Cardamine hirsuta
CARHR131490 Cardamine hirsuta
CARHR274420 Cardamine hirsuta
Carub.0001s4258 Capsella rubella
Carub.0001s4259 Capsella rubella
Carub.0004s1887 Capsella rubella
Carub.0008s2142 Capsella rubella
Ca_08853_v3 Cicer arietinum L.
Ca_10552_v3 Cicer arietinum L.
Ca_11488_v3 Cicer arietinum L.
CBR_g31286 Chara braunii
CBR_g46840 Chara braunii
CBR_g51769 Chara braunii
Cc01_g10780 Coffea canephora
Cc02_g11100 Coffea canephora
Cc02_g11110 Coffea canephora
Cc06_g04080 Coffea canephora
CDE02G3194 Ceratophyllum demersum
CDE05G2504 Ceratophyllum demersum
CDE09G0610 Ceratophyllum demersum
CDE09G0960 Ceratophyllum demersum
CDE11G0749 Ceratophyllum demersum
CDE11G1258 Ceratophyllum demersum
Cfa001664 Carpinus fangiana
Cfa011286 Carpinus fangiana
Ciclev10030047m.g Citrus clementina
Ciclev10030565m.g Citrus clementina
CiPaw.01G270500 Carya illinoinensis
CiPaw.09G173900 Carya illinoinensis
CiPaw.14G085700 Carya illinoinensis
ClCG03G002840 Citrullus lanatus
ClCG04G009200 Citrullus lanatus
ClCG08G007620 Citrullus lanatus
COL.COLO4_12164 Corchorus olitorius
COL.COLO4_18290 Corchorus olitorius
COL.COLO4_18291 Corchorus olitorius
Cpa.g.sc5.257 Carica papaya
Cpa.g.sc53.100 Carica papaya
Cpa.g.sc53.101 Carica papaya
Cpa.g.sc65.14 Carica papaya
CsaV3_1G013750 Cucumis sativus L.
CsaV3_6G036590 Cucumis sativus L.
CsaV3_6G039780 Cucumis sativus L.
CSS0004130 Camellia sinensis var. sinensis
CSS0004618 Camellia sinensis var. sinensis
CSS0012626 Camellia sinensis var. sinensis
CSS0018302 Camellia sinensis var. sinensis
CSS0020693 Camellia sinensis var. sinensis
CSS0023051 Camellia sinensis var. sinensis
CSS0035541 Camellia sinensis var. sinensis
CSS0049285 Camellia sinensis var. sinensis
DCAR_006076 Daucus carota
DCAR_006430 Daucus carota
DCAR_009303 Daucus carota
Dinv32701 Davidia involucrata
Dinv36411 Davidia involucrata
Dinv37302 Davidia involucrata
Duzib114G0393 Durio zibethinus
Duzib128G1926 Durio zibethinus
Duzib150G0102 Durio zibethinus
Duzib168G1763 Durio zibethinus
ECA233G4838 Erigeron canadensis
ECA233G5162 Erigeron canadensis
ECA238G0486 Erigeron canadensis
EL10Ac2g03610 Beta vulgaris
EL10Ac7g16560 Beta vulgaris
Eucgr.B02530 Eucalyptus grandis
Eucgr.G02858 Eucalyptus grandis
Eucgr.K01252 Eucalyptus grandis
FAN01G1067 Fragaria x ananassa
FAN02G2277 Fragaria x ananassa
FAN03G2688 Fragaria x ananassa
FAN05G0763 Fragaria x ananassa
FAN05G1033 Fragaria x ananassa
FAN05G2009 Fragaria x ananassa
FAN05G2986 Fragaria x ananassa
FAN06G1546 Fragaria x ananassa
FAN06G3739 Fragaria x ananassa
FAN06G3894 Fragaria x ananassa
FAN06G4012 Fragaria x ananassa
FAN09G0164 Fragaria x ananassa
FAN09G1317 Fragaria x ananassa
FAN09G2090 Fragaria x ananassa
FAN09G4650 Fragaria x ananassa
FAN10G0155 Fragaria x ananassa
FAN10G0188 Fragaria x ananassa
FAN11G0116 Fragaria x ananassa
FAN14G0791 Fragaria x ananassa
FAN14G1654 Fragaria x ananassa
FAN14G4738 Fragaria x ananassa
FAN14G5905 Fragaria x ananassa
FAN21G3966 Fragaria x ananassa
FAN25G0018 Fragaria x ananassa
FAN25G1153 Fragaria x ananassa
FvH4_3g31510 Fragaria vesca
FvH4_6g16150 Fragaria vesca
FvH4_6g32451 Fragaria vesca
FvH4_7g18960 Fragaria vesca
Glyma.02G163200 Glycine max
Glyma.10G057700 Glycine max
Glyma.10G209200 Glycine max
Glyma.11G196100 Glycine max
Glyma.12G078000 Glycine max
Glyma.13G144500 Glycine max
Glyma.20G181400 Glycine max
Gohir.A01G140465 Gossypium hirsutum
Gohir.A10G204400 Gossypium hirsutum
Gohir.A13G231300 Gossypium hirsutum
Gohir.D01G126300 Gossypium hirsutum
Gohir.D10G212366 Gossypium hirsutum
Gohir.D10G212432 Gossypium hirsutum
Gohir.D13G236900 Gossypium hirsutum
Gorai.002G162300 Gossypium raimondii
Gorai.011G238200 Gossypium raimondii
Gorai.013G267600 Gossypium raimondii
GSVIVG01016240001 Vitis vinifera
GSVIVG01018870001 Vitis vinifera
GSVIVG01025230001 Vitis vinifera
GSVIVG01025712001 Vitis vinifera
HanXRQChr02g0055631 Helianthus annuus
HanXRQChr06g0172061 Helianthus annuus
HanXRQChr07g0194981 Helianthus annuus
HanXRQChr08g0233181 Helianthus annuus
HanXRQChr13g0399901 Helianthus annuus
HanXRQChr14g0456731 Helianthus annuus
Haze_13796 Corylus avellana
Haze_16868 Corylus avellana
Haze_20570 Corylus avellana
Haze_23770 Corylus avellana
Hma1.2p1_0297F.1_g117070 Hydrangea macrophylla
Hma1.2p1_0297F.1_g117080 Hydrangea macrophylla
Hma1.2p1_0366F.1_g136930 Hydrangea macrophylla
HPP92_002773 Vanilla planifolia
HPP92_002774 Vanilla planifolia
HPP92_002775 Vanilla planifolia
HPP92_014810 Vanilla planifolia
HPP92_014811 Vanilla planifolia
Hund01486 Selenicereus undatus
Hund03215 Selenicereus undatus
Hund22618 Selenicereus undatus
Hund28063 Selenicereus undatus
Hund28064 Selenicereus undatus
Lalb_Chr02g0152201 Lupinus albus
Lalb_Chr02g0152221 Lupinus albus
Lalb_Chr02g0152231 Lupinus albus
Lalb_Chr03g0027541 Lupinus albus
Lalb_Chr06g0170361 Lupinus albus
Lalb_Chr19g0137101 Lupinus albus
Lalb_Chr25g0289051 Lupinus albus
Lj1g0021950 Lotus japonicus
Lj2A1018G27 Lonicera japonica
Lj2A115G52 Lonicera japonica
Lj2C115T13 Lonicera japonica
Lj3C882T4 Lonicera japonica
Lj3g0023101 Lotus japonicus
Lj5g0002645 Lotus japonicus
Lj5g0007098 Lotus japonicus
Lj6g0006446 Lotus japonicus
Lsat_1_v5_gn_1_53001 Lactuca sativa
Lsat_1_v5_gn_2_112781 Lactuca sativa
Lsat_1_v5_gn_6_29301 Lactuca sativa
Lsat_1_v5_gn_6_45320 Lactuca sativa
Manes.04G017000 Manihot esculenta
Manes.09G064300 Manihot esculenta
Manes.10G048700 Manihot esculenta
Manes.11G148900 Manihot esculenta
Mapoly0140s0016 Marchantia polymorpha
MBI18_g39095_MAGBIO Magnolia biondii
MBI18_g45385_MAGBIO Magnolia biondii
MD00G1214200 Malus domestica
MD03G1123900 Malus domestica
MD11G1140900 Malus domestica
MD12G1115400 Malus domestica
Medtr1g063920 Medicago truncatula
Medtr1g094660 Medicago truncatula
Medtr4g058000 Medicago truncatula
Medtr7g101780 Medicago truncatula
MELO3C004931.2 Cucumis melo
MELO3C014214.2 Cucumis melo
MELO3C019814.2 Cucumis melo
Migut.D02252 Erythranthe guttata
Migut.J00524 Erythranthe guttata
MSTRG.19167 Avicennia marina
MSTRG.27478 Avicennia marina
MSTRG.9155 Avicennia marina
Nitab4.5_0000071g0240 Nicotiana tabacum
Nitab4.5_0000101g0330 Nicotiana tabacum
Nitab4.5_0000106g0350 Nicotiana tabacum
Nitab4.5_0002194g0070 Nicotiana tabacum
Nitab4.5_0002963g0070 Nicotiana tabacum
Nitab4.5_0004126g0020 Nicotiana tabacum
Nitab4.5_0004479g0060 Nicotiana tabacum
Nitab4.5_0006343g0020 Nicotiana tabacum
Nn2g11541 Nelumbo nucifera
Nn2g13747 Nelumbo nucifera
Oeu005330.1 Olea europaea
Oeu016977.2 Olea europaea
Oeu020819.1 Olea europaea
Oeu042716.1 Olea europaea
Oeu042717.1 Olea europaea
Oeu049262.1 Olea europaea
Os04g0194500 Oryza sativa ssp. japonica
Os06g0731200 Oryza sativa ssp. japonica
Os10g0442900 Oryza sativa ssp. japonica
Os11g0416900 Oryza sativa ssp. japonica
Peaxi162Scf00029g01718 Petunia axillaris
Peaxi162Scf00115g01225 Petunia axillaris
Peaxi162Scf00123g01127 Petunia axillaris
Peaxi162Scf00321g00124 Petunia axillaris
Peaxi162Scf00321g00126 Petunia axillaris
PGR102G2781 Punica granatum
PGR142G1139 Punica granatum
PGR142G3305 Punica granatum
PGSC0003DMG400012001 Solanum tuberosum
Phvul.007G096850 Phaseolus vulgaris
Phvul.007G096900 Phaseolus vulgaris
Phvul.007G150000 Phaseolus vulgaris
Phvul.007G243200 Phaseolus vulgaris
Phvul.011G082400 Phaseolus vulgaris
Potri.001G058900 Populus trichocarpa
Potri.003G169000 Populus trichocarpa
Potri.006G126100 Populus trichocarpa
Potri.010G225200 Populus trichocarpa
Pp3c16_25830 Physcomitrium patens
Pp3c21_15180 Physcomitrium patens
Pp3c6_2050 Physcomitrium patens
Prupe.1G327900 Prunus persica
Prupe.2G210600 Prunus persica
Prupe.6G106500 Prunus persica
Prupe.6G234500 Prunus persica
Psat0s3759g0040 Pisum sativum
Psat3g043280 Pisum sativum
Psat6g071920 Pisum sativum
Psat6g182200 Pisum sativum
Psat7g144440 Pisum sativum
PSO017G4783 Papaver somniferum
PSO063G1667 Papaver somniferum
PSO063G4226 Papaver somniferum
PSO339G1077 Papaver somniferum
PSO339G1722 Papaver somniferum
PSO478G3411 Papaver somniferum
QL01p020943 Quercus lobata
QL01p020971 Quercus lobata
QL07p043982 Quercus lobata
QL08p055103 Quercus lobata
QL08p055130 Quercus lobata
QL08p055134 Quercus lobata
QL08p055148 Quercus lobata
QL10p058631 Quercus lobata
QL10p059140 Quercus lobata
QL10p059203 Quercus lobata
RcHm_v2.0_Chr1g0362891 Rosa chinensis
RcHm_v2.0_Chr2g0140691 Rosa chinensis
RcHm_v2.0_Chr2g0140701 Rosa chinensis
RcHm_v2.0_Chr3g0469991 Rosa chinensis
RcHm_v2.0_Chr5g0058181 Rosa chinensis
Rhsim01G0214700 Rhododendron simsii
Rhsim03G0118300 Rhododendron simsii
Rhsim03G0118400 Rhododendron simsii
Rhsim04G0144900 Rhododendron simsii
Sabra01G0042400 Salix brachista
Sabra03G0123900 Salix brachista
Sabra06G0099400 Salix brachista
Sabra10G0174100 Salix brachista
SalBow3G0202 Salvia bowleyana
SalBow3G1286 Salvia bowleyana
SalBow3G3636 Salvia bowleyana
SalBow4G0196 Salvia bowleyana
SalBow4G2225 Salvia bowleyana
SalBow4G3114 Salvia bowleyana
SalBow4G3271 Salvia bowleyana
SalBow7G2385 Salvia bowleyana
Sc06g0010370 Simmondsia chinensis
Sc09g0006160 Simmondsia chinensis
Sc20g0001710 Simmondsia chinensis
Sc20g0005260 Simmondsia chinensis
Sed0012514 Sechium edule
Sed0012516 Sechium edule
Sed0015558 Sechium edule
Sed0015661 Sechium edule
Sed0024931 Sechium edule
SEGI_05092 Sequoiadendron giganteum
SEGI_14620 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06378 Striga asiatica
SGA_v2.0_scaffold263G46001 Striga asiatica
SGA_v2.0_scaffold40G15532 Striga asiatica
SHI08929 Sapria himalayana
SMO115G0104 Selaginella moellendorffii
Solyc04g025170.4 Solanum lycopersicum
Solyc04g025180.4 Solanum lycopersicum
Solyc06g075020.3 Solanum lycopersicum
Solyc09g008000.3 Solanum lycopersicum
Solyc11g069820.3 Solanum lycopersicum
Sopen04g011580 Solanum pennellii
Sopen06g031450 Solanum pennellii
Sopen09g002800 Solanum pennellii
Sopen11g028460 Solanum pennellii
Sp1g39940 Schrenkiella parvula
Sp4g19290 Schrenkiella parvula
Sp6g22320 Schrenkiella parvula
TAR369G0118 Trochodendron aralioides
TAR623G0498 Trochodendron aralioides
TAR633G2109 Trochodendron aralioides
THA.LOC104810868 Tarenaya hassleriana
THA.LOC104823481 Tarenaya hassleriana
THA.LOC104826825 Tarenaya hassleriana
Thecc.05G063600 Theobroma cacao
Thecc.09G346100 Theobroma cacao
Thecc.10G078700 Theobroma cacao
Thhalv10011194m.g Eutrema salsugineum
Thhalv10012505m.g Eutrema salsugineum
Thhalv10016168m.g Eutrema salsugineum
TPR.G1955 Trifolium pratense
TPR.G250 Trifolium pratense
TPR.G27641 Trifolium pratense
TPR.G35219 Trifolium pratense
TPR.G39342 Trifolium pratense
TPR.G6145 Trifolium pratense
TPR.G9358 Trifolium pratense
TPR.G9360 Trifolium pratense
TWI38G0008 Tripterygium wilfordii
TWI53G1730 Tripterygium wilfordii
TWI74G0065 Tripterygium wilfordii
TWI75G1638 Tripterygium wilfordii
TWI79G1678 Tripterygium wilfordii
unitig_22.g5093 Utricularia gibba
unitig_22.g5094 Utricularia gibba
unitig_37.g12311 Utricularia gibba
unitig_37.g12312 Utricularia gibba
unitig_37.g12313 Utricularia gibba
unitig_899.g14926 Utricularia gibba
vmacro07130 Vaccinium macrocarpon
vmacro08777 Vaccinium macrocarpon
vmacro11235 Vaccinium macrocarpon
vmacro14415 Vaccinium macrocarpon
vmacro23401 Vaccinium macrocarpon
VMungo0251G0532 Vigna mungo
VMungo0720G0101 Vigna mungo
VMungo0720G1261 Vigna mungo
VMungo0720G1542 Vigna mungo
VMungo1127G0591 Vigna mungo
Zm00001eb047140 Zea mays
Zm00001eb087920 Zea mays
Zm00001eb259100 Zea mays
Zm00001eb382880 Zea mays
Zm00001eb419670 Zea mays

User provided reference genes

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