Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01880 Brassica napus
A05p05230 Brassica napus
A06p42550 Brassica napus
A08p32380 Brassica napus
A09p63110 Brassica napus
A09p63180 Brassica napus
Aa31LG1G1420 Aethionema arabicum
Aa31LG1G26780 Aethionema arabicum
Aa31LG2G6580 Aethionema arabicum
Aa31LG9G4830 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1141 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.181 Anthoceros agrestis
Actinidia14856 Actinidia chinensis
Actinidia16621 Actinidia chinensis
Actinidia36501 Actinidia chinensis
Ah.03g137880 Amaranthus hybridus
Ah.03g144870 Amaranthus hybridus
AL1G24980 Arabidopsis lyrata
AL4G44350 Arabidopsis lyrata
AL5G14300 Arabidopsis lyrata
AL7G13820 Arabidopsis lyrata
Aqoxy3G02148 Aquilegia oxysepala
Aqoxy3G03916 Aquilegia oxysepala
Aqoxy5G01266 Aquilegia oxysepala
Aqoxy7G00709 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2BXC31 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.46YC1P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5V1RNQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8H5FPK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.931R8V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JH8EKT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T521ZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V1Y6DD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XJ8ERT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XN0QSU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPHF5W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQD5K7 Arachis hypogaea
AT1G13270 Arabidopsis thaliana
AT2G45240 Arabidopsis thaliana
AT3G25740 Arabidopsis thaliana
AT4G37040 Arabidopsis thaliana
ATR0100G007 Amborella trichopoda
ATR0665G436 Amborella trichopoda
ATR0807G229 Amborella trichopoda
ATR0903G001 Amborella trichopoda
Atru.chr11.1344 Acer truncatum
Atru.chr3.349 Acer truncatum
Atru.chr5.276 Acer truncatum
AUR62001945 Chenopodium quinoa
AUR62002919 Chenopodium quinoa
AUR62004185 Chenopodium quinoa
AUR62013685 Chenopodium quinoa
AUR62027685 Chenopodium quinoa
AUR62035278 Chenopodium quinoa
BcaB02g08948 Brassica carinata
BcaB08g34286 Brassica carinata
BcaC01g00431 Brassica carinata
BcaC02g12233 Brassica carinata
BcaC02g12234 Brassica carinata
BcaC03g15846 Brassica carinata
BcaC06g31120 Brassica carinata
BcaC06g33960 Brassica carinata
BcaC07g41652 Brassica carinata
BcaC07g41655 Brassica carinata
BcaNung02515 Brassica carinata
BcaNung02516 Brassica carinata
BcaNung02579 Brassica carinata
BolC1t00196H Brassica oleracea
BolC2t09609H Brassica oleracea
BolC4t22239H Brassica oleracea
BolC4t22240H Brassica oleracea
BolC8t49227H Brassica oleracea
BolC8t52202H Brassica oleracea
BolC8t52204H Brassica oleracea
BraA01t00177Z Brassica rapa
BraA05t19493Z Brassica rapa
BraA06t27170Z Brassica rapa
BraA08t35161Z Brassica rapa
BraA09t41665Z Brassica rapa
BraA09t41670Z Brassica rapa
C01p02040 Brassica napus
C02p35980 Brassica napus
C04p06150 Brassica napus
C04p06160 Brassica napus
C07p34620 Brassica napus
C08p16050 Brassica napus
C08p46540 Brassica napus
C08p46580 Brassica napus
C08p46630 Brassica napus
CAN.G1982.5 Capsicum annuum
CAN.G836.72 Capsicum annuum
CAN.G911.5 Capsicum annuum
CANSAT01G0821 Cannabis sativa
CANSAT56G4331 Cannabis sativa
CANSAT64G2560 Cannabis sativa
CARHR013650 Cardamine hirsuta
CARHR140460 Cardamine hirsuta
CARHR146660 Cardamine hirsuta
CARHR245470 Cardamine hirsuta
Carub.0001s1300 Capsella rubella
Carub.0004s2785 Capsella rubella
Carub.0005s0356 Capsella rubella
Carub.0007s0324 Capsella rubella
Ca_18225_v3 Cicer arietinum L.
Ca_24153_v3 Cicer arietinum L.
Ca_24778_v3 Cicer arietinum L.
Ca_28831_v3 Cicer arietinum L.
CBR_g10870 Chara braunii
CBR_g18681 Chara braunii
Cc02_g24180 Coffea canephora
Cc07_g05900 Coffea canephora
Cc11_g10550 Coffea canephora
CDE04G1340 Ceratophyllum demersum
CDE04G2850 Ceratophyllum demersum
CDE09G0748 Ceratophyllum demersum
CDE11G0461 Ceratophyllum demersum
Cfa011193 Carpinus fangiana
Cfa018624 Carpinus fangiana
Ciclev10020473m.g Citrus clementina
Ciclev10025966m.g Citrus clementina
Ciclev10031889m.g Citrus clementina
CiPaw.01G019500 Carya illinoinensis
CiPaw.13G034300 Carya illinoinensis
CiPaw.13G034400 Carya illinoinensis
CiPaw.16G003300 Carya illinoinensis
ClCG02G012750 Citrullus lanatus
ClCG03G009840 Citrullus lanatus
ClCG05G002410 Citrullus lanatus
COL.COLO4_01432 Corchorus olitorius
COL.COLO4_07875 Corchorus olitorius
COL.COLO4_12520 Corchorus olitorius
Cpa.g.c30120 Carica papaya
Cpa.g.sc1.217 Carica papaya
Cpa.g.sc55.168 Carica papaya
Cpa.g.sc611.1 Carica papaya
Cre05.g237000 Chlamydomonas reinhardtii
Cre06.g279750 Chlamydomonas reinhardtii
CsaV3_2G012570 Cucumis sativus L.
CsaV3_2G016840 Cucumis sativus L.
CsaV3_3G009840 Cucumis sativus L.
CSS0010288 Camellia sinensis var. sinensis
CSS0010813 Camellia sinensis var. sinensis
CSS0015398 Camellia sinensis var. sinensis
CSS0016740 Camellia sinensis var. sinensis
CSS0019526 Camellia sinensis var. sinensis
CSS0019822 Camellia sinensis var. sinensis
CSS0026680 Camellia sinensis var. sinensis
CSS0044636 Camellia sinensis var. sinensis
DCAR_008547 Daucus carota
DCAR_030077 Daucus carota
Dinv21127 Davidia involucrata
Dinv32361 Davidia involucrata
Dinv39866 Davidia involucrata
Duzib133G0123 Durio zibethinus
Duzib138G0487 Durio zibethinus
Duzib138G1270 Durio zibethinus
Duzib248G1055 Durio zibethinus
ECA232G4019 Erigeron canadensis
ECA234G1296 Erigeron canadensis
ECA236G0927 Erigeron canadensis
EL10Ac1g00863 Beta vulgaris
EL10Ac6g14482 Beta vulgaris
EL10Ac6g15763 Beta vulgaris
Eucgr.E01451 Eucalyptus grandis
Eucgr.G02344 Eucalyptus grandis
Eucgr.I00937 Eucalyptus grandis
FAN03G2074 Fragaria x ananassa
FAN06G0799 Fragaria x ananassa
FAN07G0317 Fragaria x ananassa
FAN08G3567 Fragaria x ananassa
FAN10G3888 Fragaria x ananassa
FAN10G3912 Fragaria x ananassa
FAN12G1776 Fragaria x ananassa
FAN13G2011 Fragaria x ananassa
FAN17G2287 Fragaria x ananassa
FAN22G0486 Fragaria x ananassa
FAN23G0739 Fragaria x ananassa
FAN26G1764 Fragaria x ananassa
FAN28G2537 Fragaria x ananassa
FvH4_1g15810 Fragaria vesca
FvH4_4g28020 Fragaria vesca
FvH4_7g11350 Fragaria vesca
FvH4_7g11370 Fragaria vesca
Glyma.01G087000 Glycine max
Glyma.01G087100 Glycine max
Glyma.01G138300 Glycine max
Glyma.01G185300 Glycine max
Glyma.02G099300 Glycine max
Glyma.03G028800 Glycine max
Glyma.11G056800 Glycine max
Gohir.A11G191000 Gossypium hirsutum
Gohir.A12G101300 Gossypium hirsutum
Gohir.A12G169900 Gossypium hirsutum
Gohir.D11G197800 Gossypium hirsutum
Gohir.D12G104200 Gossypium hirsutum
Gohir.D12G173200 Gossypium hirsutum
Gorai.007G211700 Gossypium raimondii
Gorai.008G113300 Gossypium raimondii
Gorai.008G185700 Gossypium raimondii
GSVIVG01011946001 Vitis vinifera
GSVIVG01022146001 Vitis vinifera
GSVIVG01027655001 Vitis vinifera
HanXRQChr02g0037861 Helianthus annuus
HanXRQChr06g0169451 Helianthus annuus
HanXRQChr12g0378941 Helianthus annuus
HanXRQChr17g0568061 Helianthus annuus
Haze_02654 Corylus avellana
Haze_15420 Corylus avellana
Haze_17446 Corylus avellana
Haze_26360 Corylus avellana
Haze_27432 Corylus avellana
Haze_27437 Corylus avellana
Hma1.2p1_0072F.1_g038270 Hydrangea macrophylla
Hma1.2p1_0200F.1_g085980 Hydrangea macrophylla
HPP92_010122 Vanilla planifolia
HPP92_010201 Vanilla planifolia
HPP92_013113 Vanilla planifolia
HPP92_022304 Vanilla planifolia
Hund05764 Selenicereus undatus
Hund13560 Selenicereus undatus
Hund17036 Selenicereus undatus
Hund25100 Selenicereus undatus
Lalb_Chr05g0213271 Lupinus albus
Lalb_Chr07g0190021 Lupinus albus
Lalb_Chr10g0099781 Lupinus albus
Lalb_Chr12g0208091 Lupinus albus
Lj2g0016827 Lotus japonicus
Lj2g0027897 Lotus japonicus
Lj3g0013625 Lotus japonicus
Lj4C143G10 Lonicera japonica
Lj6C764T12 Lonicera japonica
Lj7A531T57 Lonicera japonica
Lj7A531T58 Lonicera japonica
Lsat_1_v5_gn_3_91220 Lactuca sativa
Lsat_1_v5_gn_4_132480 Lactuca sativa
Lsat_1_v5_gn_4_168041 Lactuca sativa
Lsat_1_v5_gn_4_19920 Lactuca sativa
Lsat_1_v5_gn_7_9300 Lactuca sativa
Manes.01G267700 Manihot esculenta
Manes.13G127000 Manihot esculenta
Manes.14G098100 Manihot esculenta
Mapoly0013s0165 Marchantia polymorpha
Mapoly0056s0031 Marchantia polymorpha
MBI02_g17337_MAGBIO Magnolia biondii
MBI04_g11447_MAGBIO Magnolia biondii
MBI09_g05213_MAGBIO Magnolia biondii
MBI09_g36360_MAGBIO Magnolia biondii
MCO09G086 Micromonas commoda
MCO11G197 Micromonas commoda
MCO14G489 Micromonas commoda
MCO15G479 Micromonas commoda
MD00G1045000 Malus domestica
MD02G1169900 Malus domestica
MD02G1206000 Malus domestica
MD07G1118400 Malus domestica
MD07G1118500 Malus domestica
MD07G1118600 Malus domestica
MD13G1046000 Malus domestica
MD16G1047600 Malus domestica
Medtr5g017630 Medicago truncatula
Medtr5g053940 Medicago truncatula
MELO3C006206.2 Cucumis melo
MELO3C020895.2 Cucumis melo
MELO3C023023.2 Cucumis melo
Migut.B01612 Erythranthe guttata
Migut.E00307 Erythranthe guttata
Migut.H00445 Erythranthe guttata
Migut.O00813 Erythranthe guttata
MSTRG.17173 Avicennia marina
MSTRG.20735 Avicennia marina
MSTRG.2258 Avicennia marina
MSTRG.2891 Avicennia marina
Nitab4.5_0000310g0070 Nicotiana tabacum
Nitab4.5_0000457g0040 Nicotiana tabacum
Nitab4.5_0000672g0030 Nicotiana tabacum
Nitab4.5_0001034g0010 Nicotiana tabacum
Nitab4.5_0008588g0020 Nicotiana tabacum
Nitab4.5_0010730g0010 Nicotiana tabacum
Nn1g01106 Nelumbo nucifera
Nn3g17749 Nelumbo nucifera
Nn4g23739 Nelumbo nucifera
Nn5g30230 Nelumbo nucifera
Oeu004836.2 Olea europaea
Oeu037931.3 Olea europaea
Oeu050776.1 Olea europaea
Oeu052343.1 Olea europaea
Os02g0761700 Oryza sativa ssp. japonica
Os04g0610500 Oryza sativa ssp. japonica
Os07g0434700 Oryza sativa ssp. japonica
Os07g0510100 Oryza sativa ssp. japonica
Os10g0508400 Oryza sativa ssp. japonica
Peaxi162Scf00013g02918 Petunia axillaris
Peaxi162Scf00380g00411 Petunia axillaris
Peaxi162Scf00380g00521 Petunia axillaris
Peaxi162Scf00964g00144 Petunia axillaris
PGR031G1651 Punica granatum
PGR042G1031 Punica granatum
PGR119G0921 Punica granatum
PGSC0003DMG400000812 Solanum tuberosum
PGSC0003DMG400015778 Solanum tuberosum
PGSC0003DMG400026008 Solanum tuberosum
Phvul.002G019600 Phaseolus vulgaris
Phvul.003G111801 Phaseolus vulgaris
Phvul.010G080400 Phaseolus vulgaris
Phvul.010G080500 Phaseolus vulgaris
Potri.005G137400 Populus trichocarpa
Potri.008G117200 Populus trichocarpa
Potri.010G129101 Populus trichocarpa
Potri.014G067300 Populus trichocarpa
Pp3c17_7960 Physcomitrium patens
Pp3c21_22170 Physcomitrium patens
Pp3c21_22630 Physcomitrium patens
Pp3c8_19170 Physcomitrium patens
Pp3c9_1530 Physcomitrium patens
PRCOL_00001165 Prasinoderma coloniale
Prupe.1G306000 Prunus persica
Prupe.2G141300 Prunus persica
Prupe.7G135200 Prunus persica
Psat2g085800 Pisum sativum
Psat2g166000 Pisum sativum
Psat7g230720 Pisum sativum
PSO170G2326 Papaver somniferum
PSO170G4369 Papaver somniferum
PSO210G3822 Papaver somniferum
PSO782G2752 Papaver somniferum
PSO782G5252 Papaver somniferum
QL01p045069 Quercus lobata
QL04p040000 Quercus lobata
QL06p041858 Quercus lobata
RcHm_v2.0_Chr1g0349561 Rosa chinensis
RcHm_v2.0_Chr1g0349651 Rosa chinensis
RcHm_v2.0_Chr2g0097651 Rosa chinensis
RcHm_v2.0_Chr2g0105091 Rosa chinensis
RcHm_v2.0_Chr4g0403521 Rosa chinensis
RcHm_v2.0_Chr4g0435761 Rosa chinensis
Rhsim07G0029400 Rhododendron simsii
Rhsim07G0029600 Rhododendron simsii
Rhsim09G0111700 Rhododendron simsii
Rhsim10G0119200 Rhododendron simsii
RhsimUnG0228100 Rhododendron simsii
Sabra05G0109700 Salix brachista
Sabra08G0089000 Salix brachista
Sabra10G0098200 Salix brachista
Sabra14G0047300 Salix brachista
SalBow1G0726 Salvia bowleyana
SalBow1G0906 Salvia bowleyana
SalBow5G1473 Salvia bowleyana
SalBow5G3084 Salvia bowleyana
SalBow6G3446 Salvia bowleyana
SalBow8G2205 Salvia bowleyana
Sc03g0001500 Simmondsia chinensis
Sc11g0003150 Simmondsia chinensis
Sc23g0001150 Simmondsia chinensis
Sed0001318 Sechium edule
Sed0006162 Sechium edule
Sed0010826 Sechium edule
Sed0027409 Sechium edule
SEGI_10170 Sequoiadendron giganteum
SEGI_14729 Sequoiadendron giganteum
SEGI_15470 Sequoiadendron giganteum
SEGI_25320 Sequoiadendron giganteum
SEGI_27784 Sequoiadendron giganteum
SEGI_34025 Sequoiadendron giganteum
SEGI_35207 Sequoiadendron giganteum
SGA_v2.0_scaffold14G06836 Striga asiatica
SGA_v2.0_scaffold153G36983 Striga asiatica
SGA_v2.0_scaffold15G07275 Striga asiatica
SHI03855 Sapria himalayana
SHI13526 Sapria himalayana
SHI13527 Sapria himalayana
SHI13528 Sapria himalayana
SHI13529 Sapria himalayana
SHI21066 Sapria himalayana
SMO171G0038 Selaginella moellendorffii
SMO231G0024 Selaginella moellendorffii
SMO351G0456 Selaginella moellendorffii
SMO358G0517 Selaginella moellendorffii
Solyc01g091070.3 Solanum lycopersicum
Solyc02g090670.3 Solanum lycopersicum
Solyc05g009780.3 Solanum lycopersicum
Sopen01g036820 Solanum pennellii
Sopen02g035310 Solanum pennellii
Sopen05g005610 Solanum pennellii
Sp1g11780 Schrenkiella parvula
Sp2g14990 Schrenkiella parvula
Sp4g27270 Schrenkiella parvula
Sp7g34720 Schrenkiella parvula
SpUn0031_0050 Schrenkiella parvula
TAR374G1280 Trochodendron aralioides
TAR375G0828 Trochodendron aralioides
TAR381G0509 Trochodendron aralioides
THA.LOC104802454 Tarenaya hassleriana
THA.LOC104819841 Tarenaya hassleriana
THA.LOC104824038 Tarenaya hassleriana
Thecc.01G054000 Theobroma cacao
Thecc.01G379400 Theobroma cacao
Thecc.02G360300 Theobroma cacao
Thhalv10001475m.g Eutrema salsugineum
Thhalv10004848m.g Eutrema salsugineum
Thhalv10007980m.g Eutrema salsugineum
Thhalv10025605m.g Eutrema salsugineum
TPR.G15329 Trifolium pratense
TPR.G21284 Trifolium pratense
TPR.G25946 Trifolium pratense
TPR.G7601 Trifolium pratense
TWI09G0767 Tripterygium wilfordii
TWI14G0338 Tripterygium wilfordii
TWI14G0591 Tripterygium wilfordii
TWI14G0834 Tripterygium wilfordii
TWI31G0541 Tripterygium wilfordii
TWI79G0952 Tripterygium wilfordii
unitig_26.g8899 Utricularia gibba
unitig_62.g23716 Utricularia gibba
unitig_899.g14656 Utricularia gibba
vmacro05328 Vaccinium macrocarpon
vmacro05329 Vaccinium macrocarpon
vmacro08891 Vaccinium macrocarpon
vmacro10532 Vaccinium macrocarpon
vmacro13424 Vaccinium macrocarpon
vmacro13425 Vaccinium macrocarpon
VMungo0331G0694 Vigna mungo
VMungo0331G1224 Vigna mungo
VMungo1215G1078 Vigna mungo
VMungo1215G2675 Vigna mungo
Zm00001eb043920 Zea mays
Zm00001eb071170 Zea mays
Zm00001eb105810 Zea mays
Zm00001eb171060 Zea mays
Zm00001eb220650 Zea mays
Zm00001eb255710 Zea mays

User provided reference genes

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