Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p10870 Brassica napus
A09p61780 Brassica napus
A09p61790 Brassica napus
A10p00380 Brassica napus
Aa31LG1G280 Aethionema arabicum
Aa31LG7G10020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1173 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.1174 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2483 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.370 Anthoceros agrestis
Actinidia18291 Actinidia chinensis
Actinidia18292 Actinidia chinensis
Actinidia25513 Actinidia chinensis
Actinidia33996 Actinidia chinensis
Actinidia34051 Actinidia chinensis
Actinidia38432 Actinidia chinensis
Ah.02g114540 Amaranthus hybridus
Ah.03g135550 Amaranthus hybridus
Ah.11g046950 Amaranthus hybridus
Ah.11g046960 Amaranthus hybridus
AL1G10750 Arabidopsis lyrata
AL1G26840 Arabidopsis lyrata
Aqoxy3G00149 Aquilegia oxysepala
Aqoxy3G00151 Aquilegia oxysepala
Aqoxy5G03078 Aquilegia oxysepala
Aqoxy5G03082 Aquilegia oxysepala
Aqoxy5G03083 Aquilegia oxysepala
Aqoxy5G03084 Aquilegia oxysepala
Aqoxy5G03085 Aquilegia oxysepala
Aqoxy5G03087 Aquilegia oxysepala
Aqoxy5G03088 Aquilegia oxysepala
Aqoxy5G03094 Aquilegia oxysepala
Aqoxy5G03095 Aquilegia oxysepala
Aqoxy5G03097 Aquilegia oxysepala
Aqoxy5G03098 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D9VVXL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LXT1CN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LYV1YH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M0PR6E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NLY2UH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RQM5G4 Arachis hypogaea
AT1G01630 Arabidopsis thaliana
AT1G14820 Arabidopsis thaliana
ATR0118G006 Amborella trichopoda
ATR0582G015 Amborella trichopoda
ATR0582G281 Amborella trichopoda
ATR0582G362 Amborella trichopoda
Atru.chr11.907 Acer truncatum
Atru.chr12.1425 Acer truncatum
Atru.chr6.1930 Acer truncatum
Atru.chr6.1931 Acer truncatum
Atru.chr6.1932 Acer truncatum
Atru.chr8.1276 Acer truncatum
AUR62032211 Chenopodium quinoa
AUR62032213 Chenopodium quinoa
AUR62043312 Chenopodium quinoa
AUR62043313 Chenopodium quinoa
AUR62043314 Chenopodium quinoa
AUR62044193 Chenopodium quinoa
BcaB02g06551 Brassica carinata
BcaB03g13600 Brassica carinata
BcaB08g34410 Brassica carinata
BcaB08g34414 Brassica carinata
BcaB08g34415 Brassica carinata
BcaB08g34416 Brassica carinata
BcaC05g25402 Brassica carinata
BcaC07g41537 Brassica carinata
BcaC07g41538 Brassica carinata
BcaC07g42351 Brassica carinata
BcaC07g42417 Brassica carinata
BolC5t28831H Brassica oleracea
BolC5t30025H Brassica oleracea
BolC8t52093H Brassica oleracea
BolC8t52094H Brassica oleracea
BolC8t52892H Brassica oleracea
BraA06t24265Z Brassica rapa
BraA09t42257Z Brassica rapa
BraA10t42317Z Brassica rapa
C05p00410 Brassica napus
C05p12800 Brassica napus
C08p45390 Brassica napus
C08p45400 Brassica napus
C08p53780 Brassica napus
CAN.G1089.19 Capsicum annuum
CAN.G282.121 Capsicum annuum
CAN.G282.122 Capsicum annuum
CAN.G843.6 Capsicum annuum
CANSAT01G0604 Cannabis sativa
CANSAT01G0853 Cannabis sativa
CANSAT01G2091 Cannabis sativa
CANSAT78G0182 Cannabis sativa
CANSAT78G1894 Cannabis sativa
CARHR000720 Cardamine hirsuta
CARHR015350 Cardamine hirsuta
CARHR015360 Cardamine hirsuta
CARHR063670 Cardamine hirsuta
Carub.0001s0059 Capsella rubella
Carub.0001s1461 Capsella rubella
Ca_10876_v3 Cicer arietinum L.
Ca_12534_v3 Cicer arietinum L.
Ca_16826_v3 Cicer arietinum L.
Ca_16827_v3 Cicer arietinum L.
CBR_g36387 Chara braunii
Cc04_g05800 Coffea canephora
Cc11_g07740 Coffea canephora
Cc11_g07760 Coffea canephora
Cc11_g14970 Coffea canephora
CDE02G3887 Ceratophyllum demersum
CDE05G0751 Ceratophyllum demersum
CDE06G1622 Ceratophyllum demersum
Cfa009453 Carpinus fangiana
Cfa015031 Carpinus fangiana
Cfa018701 Carpinus fangiana
Ciclev10005704m.g Citrus clementina
Ciclev10016393m.g Citrus clementina
Ciclev10032562m.g Citrus clementina
CiPaw.05G100900 Carya illinoinensis
CiPaw.06G053300 Carya illinoinensis
CiPaw.06G109700 Carya illinoinensis
ClCG07G005490 Citrullus lanatus
ClCG07G005510 Citrullus lanatus
ClCG07G011970 Citrullus lanatus
COL.COLO4_16610 Corchorus olitorius
COL.COLO4_16611 Corchorus olitorius
COL.COLO4_16612 Corchorus olitorius
COL.COLO4_16613 Corchorus olitorius
COL.COLO4_35999 Corchorus olitorius
COL.COLO4_37266 Corchorus olitorius
Cpa.g.sc2.185 Carica papaya
Cpa.g.sc38.71 Carica papaya
CsaV3_4G002180 Cucumis sativus L.
CsaV3_5G014390 Cucumis sativus L.
CsaV3_5G014400 Cucumis sativus L.
CSS0008028 Camellia sinensis var. sinensis
CSS0030051 Camellia sinensis var. sinensis
CSS0030712 Camellia sinensis var. sinensis
CSS0043377 Camellia sinensis var. sinensis
CSS0046117 Camellia sinensis var. sinensis
DCAR_002676 Daucus carota
DCAR_023573 Daucus carota
DCAR_023574 Daucus carota
DCAR_024634 Daucus carota
DCAR_025641 Daucus carota
DCAR_025642 Daucus carota
Dinv16450 Davidia involucrata
Dinv18905 Davidia involucrata
Dinv23232 Davidia involucrata
Dinv26355 Davidia involucrata
Dinv26385 Davidia involucrata
Duzib205G1603 Durio zibethinus
Duzib248G0548 Durio zibethinus
Duzib248G0789 Durio zibethinus
Duzib251G0147 Durio zibethinus
ECA232G0988 Erigeron canadensis
ECA234G1040 Erigeron canadensis
ECA234G2215 Erigeron canadensis
ECA234G2312 Erigeron canadensis
ECA234G2449 Erigeron canadensis
ECA247G1613 Erigeron canadensis
ECA247G3590 Erigeron canadensis
ECA247G3735 Erigeron canadensis
EL10Ac5g11275 Beta vulgaris
EL10Ac5g11276 Beta vulgaris
EL10Ac5g11277 Beta vulgaris
Eucgr.B02677 Eucalyptus grandis
Eucgr.B02680 Eucalyptus grandis
Eucgr.L02625 Eucalyptus grandis
Eucgr.L03397 Eucalyptus grandis
FAN04G1102 Fragaria x ananassa
FAN07G0242 Fragaria x ananassa
FAN07G1372 Fragaria x ananassa
FAN07G1918 Fragaria x ananassa
FAN08G1823 Fragaria x ananassa
FAN12G1461 Fragaria x ananassa
FAN12G3380 Fragaria x ananassa
FAN13G0878 Fragaria x ananassa
FAN17G0340 Fragaria x ananassa
FAN17G2547 Fragaria x ananassa
FAN18G2278 Fragaria x ananassa
FAN22G0021 Fragaria x ananassa
FvH4_4g22590 Fragaria vesca
FvH4_4g33460 Fragaria vesca
FvH4_5g09680 Fragaria vesca
Glyma.02G086000 Glycine max
Glyma.04G202100 Glycine max
Glyma.05G200000 Glycine max
Glyma.06G163500 Glycine max
Glyma.08G007400 Glycine max
Gohir.A01G020400 Gossypium hirsutum
Gohir.A03G055900 Gossypium hirsutum
Gohir.A03G115738 Gossypium hirsutum
Gohir.A03G115776 Gossypium hirsutum
Gohir.A07G046400 Gossypium hirsutum
Gohir.D01G019000 Gossypium hirsutum
Gohir.D02G139600 Gossypium hirsutum
Gohir.D03G110600 Gossypium hirsutum
Gohir.D07G050700 Gossypium hirsutum
Gorai.001G053800 Gossypium raimondii
Gorai.002G021200 Gossypium raimondii
Gorai.003G117000 Gossypium raimondii
Gorai.005G157200 Gossypium raimondii
GSVIVG01001094001 Vitis vinifera
GSVIVG01008660001 Vitis vinifera
GSVIVG01011647001 Vitis vinifera
HanXRQChr09g0273811 Helianthus annuus
HanXRQChr16g0527321 Helianthus annuus
HanXRQChr16g0527331 Helianthus annuus
HanXRQChr16g0532721 Helianthus annuus
HanXRQChr17g0566411 Helianthus annuus
Haze_06949 Corylus avellana
Haze_07091 Corylus avellana
Haze_10866 Corylus avellana
Haze_10867 Corylus avellana
Haze_12507 Corylus avellana
Hma1.2p1_0277F.1_g111590 Hydrangea macrophylla
Hma1.2p1_0452F.1_g155955 Hydrangea macrophylla
HPP92_003179 Vanilla planifolia
Hund02513 Selenicereus undatus
Hund10028 Selenicereus undatus
Lalb_Chr04g0258721 Lupinus albus
Lalb_Chr07g0183851 Lupinus albus
Lalb_Chr07g0183861 Lupinus albus
Lalb_Chr08g0237571 Lupinus albus
Lalb_Chr11g0069131 Lupinus albus
Lalb_Chr17g0338411 Lupinus albus
Lj1g0001876 Lotus japonicus
Lj2A92G94 Lonicera japonica
Lj2g0009818 Lotus japonicus
Lj3A863T44 Lonicera japonica
Lj4g0024120 Lotus japonicus
Lj6A736G85 Lonicera japonica
Lj9A487G54 Lonicera japonica
Lsat_1_v5_gn_1_30200 Lactuca sativa
Lsat_1_v5_gn_1_30220 Lactuca sativa
Lsat_1_v5_gn_4_24681 Lactuca sativa
Lsat_1_v5_gn_4_24780 Lactuca sativa
Lsat_1_v5_gn_4_84360 Lactuca sativa
Manes.08G100800 Manihot esculenta
Manes.09G188400 Manihot esculenta
Manes.14G044000 Manihot esculenta
Manes.15G135200 Manihot esculenta
Manes.15G135300 Manihot esculenta
Manes.17G084700 Manihot esculenta
Manes.17G084777 Manihot esculenta
Mapoly0007s0202 Marchantia polymorpha
Mapoly0095s0006 Marchantia polymorpha
MBI07_g35980_MAGBIO Magnolia biondii
MBI11_g20080_MAGBIO Magnolia biondii
MBI19_g36738_MAGBIO Magnolia biondii
MBI19_g36739_MAGBIO Magnolia biondii
MBI19_g41134_MAGBIO Magnolia biondii
MD06G1129400 Malus domestica
MD13G1019700 Malus domestica
MD13G1131200 Malus domestica
MD14G1146600 Malus domestica
MD16G1017800 Malus domestica
MD16G1141400 Malus domestica
Medtr1g032580 Medicago truncatula
Medtr3g098530 Medicago truncatula
Medtr8g096170 Medicago truncatula
Medtr8g096180 Medicago truncatula
MELO3C016666.2 Cucumis melo
MELO3C016667.2 Cucumis melo
MELO3C017819.2 Cucumis melo
Migut.D01176 Erythranthe guttata
Migut.D01177 Erythranthe guttata
Migut.D01178 Erythranthe guttata
Migut.E00490 Erythranthe guttata
Migut.E00491 Erythranthe guttata
Migut.I00667 Erythranthe guttata
Migut.K01052 Erythranthe guttata
Migut.M01218 Erythranthe guttata
MSTRG.11197 Avicennia marina
MSTRG.13630 Avicennia marina
MSTRG.450 Avicennia marina
MSTRG.7285 Avicennia marina
MSTRG.9375 Avicennia marina
Nitab4.5_0000135g0020 Nicotiana tabacum
Nitab4.5_0000198g0080 Nicotiana tabacum
Nitab4.5_0000640g0110 Nicotiana tabacum
Nitab4.5_0000976g0100 Nicotiana tabacum
Nitab4.5_0000976g0170 Nicotiana tabacum
Nitab4.5_0001841g0020 Nicotiana tabacum
Nitab4.5_0005774g0010 Nicotiana tabacum
Nitab4.5_0005774g0020 Nicotiana tabacum
Nitab4.5_0005774g0030 Nicotiana tabacum
Nitab4.5_0008858g0050 Nicotiana tabacum
Nn3g16265 Nelumbo nucifera
Nn3g18394 Nelumbo nucifera
Nn4g24410 Nelumbo nucifera
Oeu010253.1 Olea europaea
Oeu013662.1 Olea europaea
Oeu024533.1 Olea europaea
Oeu044003.1 Olea europaea
Oeu044518.2 Olea europaea
Oeu058199.2 Olea europaea
Os01g0926800 Oryza sativa ssp. japonica
Os03g0850700 Oryza sativa ssp. japonica
Peaxi162Scf00207g00253 Petunia axillaris
Peaxi162Scf00275g00021 Petunia axillaris
Peaxi162Scf00314g00634 Petunia axillaris
Peaxi162Scf00655g00009 Petunia axillaris
PGR119G1590 Punica granatum
PGSC0003DMG400014173 Solanum tuberosum
PGSC0003DMG400022783 Solanum tuberosum
PGSC0003DMG400025577 Solanum tuberosum
PGSC0003DMG401022797 Solanum tuberosum
PGSC0003DMG402022797 Solanum tuberosum
PGSC0003DMG403022797 Solanum tuberosum
Phvul.002G281200 Phaseolus vulgaris
Phvul.003G016900 Phaseolus vulgaris
Phvul.009G160800 Phaseolus vulgaris
Potri.001G068000 Populus trichocarpa
Potri.003G162100 Populus trichocarpa
Potri.008G135600 Populus trichocarpa
Potri.010G105100 Populus trichocarpa
Potri.010G105400 Populus trichocarpa
Potri.015G023000 Populus trichocarpa
Potri.017G063966 Populus trichocarpa
Pp3c11_20220 Physcomitrium patens
Pp3c14_20050 Physcomitrium patens
Pp3c5_1630 Physcomitrium patens
Pp3c7_7820 Physcomitrium patens
Pp3c9_2900 Physcomitrium patens
Prupe.1G214400 Prunus persica
Prupe.1G334300 Prunus persica
Prupe.5G140600 Prunus persica
Psat5g055280 Pisum sativum
Psat6g051680 Pisum sativum
Psat7g039560 Pisum sativum
PSO017G0351 Papaver somniferum
PSO017G1929 Papaver somniferum
PSO017G3004 Papaver somniferum
PSO017G4503 Papaver somniferum
PSO017G5973 Papaver somniferum
PSO063G0383 Papaver somniferum
PSO063G5431 Papaver somniferum
PSO478G0208 Papaver somniferum
PSO478G0339 Papaver somniferum
PSO478G0551 Papaver somniferum
PSO478G1503 Papaver somniferum
PSO478G4174 Papaver somniferum
PSO478G4391 Papaver somniferum
PSO478G4443 Papaver somniferum
PSO478G4770 Papaver somniferum
PSO478G5093 Papaver somniferum
QL03p036155 Quercus lobata
QL03p049098 Quercus lobata
QL10p000331 Quercus lobata
RcHm_v2.0_Chr4g0428821 Rosa chinensis
RcHm_v2.0_Chr4g0428831 Rosa chinensis
RcHm_v2.0_Chr4g0442771 Rosa chinensis
RcHm_v2.0_Chr7g0188571 Rosa chinensis
Rhsim04G0170400 Rhododendron simsii
Rhsim04G0170600 Rhododendron simsii
Rhsim08G0198400 Rhododendron simsii
Rhsim08G0198500 Rhododendron simsii
Sabra01G0047300 Salix brachista
Sabra03G0117800 Salix brachista
Sabra08G0103600 Salix brachista
Sabra13G0055300 Salix brachista
Sabra15G0128000 Salix brachista
Sabra15G0129900 Salix brachista
Sabra15G0130200 Salix brachista
Sabra15G0130500 Salix brachista
SalBow1G7838 Salvia bowleyana
SalBow2G2179 Salvia bowleyana
SalBow2G2975 Salvia bowleyana
SalBow7G2758 Salvia bowleyana
SalBow8G3912 Salvia bowleyana
Sc22g0003280 Simmondsia chinensis
Sed0002612 Sechium edule
Sed0011350 Sechium edule
Sed0021426 Sechium edule
SEGI_00504 Sequoiadendron giganteum
SEGI_13161 Sequoiadendron giganteum
SEGI_26478 Sequoiadendron giganteum
SEGI_28890 Sequoiadendron giganteum
SEGI_38763 Sequoiadendron giganteum
SGA_v2.0_scaffold23G10183 Striga asiatica
SGA_v2.0_scaffold5G02804 Striga asiatica
SGA_v2.0_scaffold7G03941 Striga asiatica
Solyc01g005253.1 Solanum lycopersicum
Solyc01g005257.1 Solanum lycopersicum
Solyc01g005280.3 Solanum lycopersicum
Solyc01g005290.4 Solanum lycopersicum
Solyc03g118150.3 Solanum lycopersicum
Solyc06g068800.3 Solanum lycopersicum
Sopen01g001290 Solanum pennellii
Sopen01g001300 Solanum pennellii
Sopen01g001310 Solanum pennellii
Sopen03g037070 Solanum pennellii
Sopen06g026070 Solanum pennellii
Sp1g00690 Schrenkiella parvula
Sp1g13260 Schrenkiella parvula
Sp1g13265 Schrenkiella parvula
TAR374G0770 Trochodendron aralioides
TAR622G1183 Trochodendron aralioides
TAR622G1277 Trochodendron aralioides
TAR622G1393 Trochodendron aralioides
TAR629G1669 Trochodendron aralioides
THA.LOC104805086 Tarenaya hassleriana
THA.LOC104807269 Tarenaya hassleriana
THA.LOC104825457 Tarenaya hassleriana
Thecc.02G191600 Theobroma cacao
Thecc.02G294800 Theobroma cacao
Thecc.03G141400 Theobroma cacao
Thhalv10008535m.g Eutrema salsugineum
Thhalv10008567m.g Eutrema salsugineum
TPR.G12741 Trifolium pratense
TPR.G25961 Trifolium pratense
TPR.G36972 Trifolium pratense
TWI18G0650 Tripterygium wilfordii
TWI36G0762 Tripterygium wilfordii
TWI39G0921 Tripterygium wilfordii
TWI74G0097 Tripterygium wilfordii
unitig_0.g349 Utricularia gibba
unitig_27.g25308 Utricularia gibba
vmacro08571 Vaccinium macrocarpon
vmacro16070 Vaccinium macrocarpon
vmacro19112 Vaccinium macrocarpon
vmacro19113 Vaccinium macrocarpon
vmacro19192 Vaccinium macrocarpon
vmacro19193 Vaccinium macrocarpon
VMungo0251G0781 Vigna mungo
VMungo1215G2250 Vigna mungo
VMungo1309G1440 Vigna mungo
Zm00001eb063760 Zea mays
Zm00001eb142620 Zea mays
Zm00001eb142630 Zea mays
Zm00001eb210750 Zea mays

User provided reference genes

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