Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p14720 Brassica napus
A05p01540 Brassica napus
A05p01550 Brassica napus
A09p14160 Brassica napus
A09p14170 Brassica napus
A09p14930 Brassica napus
Aa31LG1G27640 Aethionema arabicum
Aa31LG2G1220 Aethionema arabicum
Aa31LG9G430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis
Actinidia01411 Actinidia chinensis
Actinidia04222 Actinidia chinensis
Actinidia10092 Actinidia chinensis
Actinidia10093 Actinidia chinensis
Actinidia20184 Actinidia chinensis
Actinidia27144 Actinidia chinensis
Actinidia28488 Actinidia chinensis
Actinidia28489 Actinidia chinensis
Ah.05g179980 Amaranthus hybridus
Ah.07g196880 Amaranthus hybridus
Ah.12g052170 Amaranthus hybridus
AL2G10830 Arabidopsis lyrata
AL2G10840 Arabidopsis lyrata
AL4G45520 Arabidopsis lyrata
AL7G47760 Arabidopsis lyrata
Aqoxy6G01756 Aquilegia oxysepala
Aqoxy6G01758 Aquilegia oxysepala
Aqoxy7G00227 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2M8W8F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5KS94B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7I3JKH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CSBF71 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G7CVB6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PRSK66 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea
AT1G64180 Arabidopsis thaliana
AT1G64185 Arabidopsis thaliana
AT2G46250 Arabidopsis thaliana
AT5G41620 Arabidopsis thaliana
AT5G41650 Arabidopsis thaliana
ATR0580G205 Amborella trichopoda
ATR1093G017 Amborella trichopoda
Atru.chr9.2071 Acer truncatum
Atru.chr9.2072 Acer truncatum
Atru.chr9.2073 Acer truncatum
Atru.chr9.2074 Acer truncatum
AUR62004435 Chenopodium quinoa
AUR62010788 Chenopodium quinoa
AUR62019784 Chenopodium quinoa
AUR62023513 Chenopodium quinoa
BcaB06g27636 Brassica carinata
BcaB06g27637 Brassica carinata
BcaB06g27638 Brassica carinata
BcaB06g27639 Brassica carinata
BcaB06g27640 Brassica carinata
BcaB06g27641 Brassica carinata
BcaB07g30070 Brassica carinata
BcaB07g31442 Brassica carinata
BcaB07g31521 Brassica carinata
BcaB07g31522 Brassica carinata
BcaC02g08944 Brassica carinata
BcaC02g12511 Brassica carinata
BcaC02g12700 Brassica carinata
BcaC04g22537 Brassica carinata
BcaC04g22646 Brassica carinata
BcaC04g22647 Brassica carinata
BcaC05g25123 Brassica carinata
BolC4t21827H Brassica oleracea
BolC4t26456H Brassica oleracea
BolC9t54605H Brassica oleracea
BolC9t54606H Brassica oleracea
BolC9t54702H Brassica oleracea
BraA04t17112Z Brassica rapa
BraA05t19150Z Brassica rapa
BraA09t37064Z Brassica rapa
BraA09t37065Z Brassica rapa
BraA09t37138Z Brassica rapa
C04p01770 Brassica napus
C04p48610 Brassica napus
C09p17070 Brassica napus
C09p17080 Brassica napus
C09p18050 Brassica napus
CAN.G375.83 Capsicum annuum
CAN.G532.61 Capsicum annuum
CAN.G78.150 Capsicum annuum
CANSAT21G0685 Cannabis sativa
CANSAT21G2284 Cannabis sativa
CANSAT56G1834 Cannabis sativa
CARHR046740 Cardamine hirsuta
CARHR046760 Cardamine hirsuta
CARHR141520 Cardamine hirsuta
CARHR212870 Cardamine hirsuta
CARHR212880 Cardamine hirsuta
Carub.0002s0062 Capsella rubella
Carub.0002s0063 Capsella rubella
Carub.0004s2895 Capsella rubella
Carub.0007s3383 Capsella rubella
Carub.0007s3384 Capsella rubella
Ca_03500_v3 Cicer arietinum L.
Ca_09484_v3 Cicer arietinum L.
Ca_23551_v3 Cicer arietinum L.
Ca_24528_v3 Cicer arietinum L.
Cc02_g38820 Coffea canephora
Cc03_g08310 Coffea canephora
Cc08_g15570 Coffea canephora
CDE02G2665 Ceratophyllum demersum
CDE08G0450 Ceratophyllum demersum
Cfa003847 Carpinus fangiana
Cfa012280 Carpinus fangiana
Cfa012281 Carpinus fangiana
Ciclev10019168m.g Citrus clementina
Ciclev10019237m.g Citrus clementina
Ciclev10022889m.g Citrus clementina
CiPaw.01G070400 Carya illinoinensis
CiPaw.02G037500 Carya illinoinensis
CiPaw.11G126200 Carya illinoinensis
CiPaw.12G086700 Carya illinoinensis
CiPaw.12G086800 Carya illinoinensis
ClCG01G002120 Citrullus lanatus
ClCG11G007680 Citrullus lanatus
COL.COLO4_06355 Corchorus olitorius
COL.COLO4_21750 Corchorus olitorius
COL.COLO4_21751 Corchorus olitorius
Cpa.g.sc122.17 Carica papaya
Cpa.g.sc184.5 Carica papaya
CsaV3_2G033880 Cucumis sativus L.
CsaV3_5G002240 Cucumis sativus L.
CSS0005587 Camellia sinensis var. sinensis
CSS0015159 Camellia sinensis var. sinensis
CSS0021876 Camellia sinensis var. sinensis
CSS0025412 Camellia sinensis var. sinensis
CSS0041816 Camellia sinensis var. sinensis
CSS0041928 Camellia sinensis var. sinensis
DCAR_008644 Daucus carota
DCAR_025235 Daucus carota
DCAR_027744 Daucus carota
Dinv32541 Davidia involucrata
Dinv32542 Davidia involucrata
Dinv37564 Davidia involucrata
Dinv38880 Davidia involucrata
Dinv43885 Davidia involucrata
Duzib068G0549 Durio zibethinus
Duzib084G0256 Durio zibethinus
Duzib084G1414 Durio zibethinus
Duzib133G1464 Durio zibethinus
Duzib138G1087 Durio zibethinus
Duzib205G0346 Durio zibethinus
ECA233G4373 Erigeron canadensis
ECA236G4284 Erigeron canadensis
ECA246G2267 Erigeron canadensis
EL10Ac1g00327 Beta vulgaris
EL10Ac1g00328 Beta vulgaris
EL10Ac5g12861 Beta vulgaris
Eucgr.D01786 Eucalyptus grandis
Eucgr.D02336 Eucalyptus grandis
Eucgr.E00823 Eucalyptus grandis
FAN01G2367 Fragaria x ananassa
FAN03G2375 Fragaria x ananassa
FAN04G2189 Fragaria x ananassa
FAN06G1755 Fragaria x ananassa
FAN06G4962 Fragaria x ananassa
FAN08G0967 Fragaria x ananassa
FAN08G1711 Fragaria x ananassa
FAN10G0761 Fragaria x ananassa
FAN10G3363 Fragaria x ananassa
FAN13G0022 Fragaria x ananassa
FAN13G0326 Fragaria x ananassa
FAN13G0962 Fragaria x ananassa
FAN13G1856 Fragaria x ananassa
FAN13G2166 Fragaria x ananassa
FAN18G4081 Fragaria x ananassa
FAN18G4162 Fragaria x ananassa
FAN28G0268 Fragaria x ananassa
FvH4_5g03740 Fragaria vesca
FvH4_5g03750 Fragaria vesca
FvH4_5g27350 Fragaria vesca
FvH4_7g15750 Fragaria vesca
Glyma.01G223700 Glycine max
Glyma.01G223800 Glycine max
Glyma.03G254600 Glycine max
Glyma.05G213500 Glycine max
Glyma.06G264500 Glycine max
Glyma.07G061300 Glycine max
Glyma.08G020100 Glycine max
Glyma.11G019700 Glycine max
Glyma.11G019800 Glycine max
Glyma.15G246700 Glycine max
Glyma.16G029900 Glycine max
Glyma.19G252300 Glycine max
Gohir.A08G091500 Gossypium hirsutum
Gohir.A08G126500 Gossypium hirsutum
Gohir.A11G093500 Gossypium hirsutum
Gohir.A12G232000 Gossypium hirsutum
Gohir.A12G232520 Gossypium hirsutum
Gohir.D08G133400 Gossypium hirsutum
Gohir.D11G098500 Gossypium hirsutum
Gohir.D12G235200 Gossypium hirsutum
Gohir.D12G235300 Gossypium hirsutum
Gorai.004G136500 Gossypium raimondii
Gorai.004G153500 Gossypium raimondii
Gorai.007G104700 Gossypium raimondii
Gorai.008G251400 Gossypium raimondii
Gorai.008G251500 Gossypium raimondii
GSVIVG01019462001 Vitis vinifera
GSVIVG01027031001 Vitis vinifera
HanXRQChr04g0120651 Helianthus annuus
HanXRQChr08g0225381 Helianthus annuus
HanXRQChr10g0292751 Helianthus annuus
HanXRQChr17g0535511 Helianthus annuus
Haze_08704 Corylus avellana
Haze_15603 Corylus avellana
Hma1.2p1_0384F.1_g140890 Hydrangea macrophylla
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla
HPP92_002836 Vanilla planifolia
HPP92_002837 Vanilla planifolia
Hund11423 Selenicereus undatus
Hund14248 Selenicereus undatus
Hund16686 Selenicereus undatus
Hund27230 Selenicereus undatus
Hund27231 Selenicereus undatus
Lalb_Chr05g0211671 Lupinus albus
Lalb_Chr09g0332711 Lupinus albus
Lalb_Chr10g0096471 Lupinus albus
Lalb_Chr10g0096481 Lupinus albus
Lalb_Chr17g0338881 Lupinus albus
Lalb_Chr17g0338891 Lupinus albus
Lalb_Chr17g0338901 Lupinus albus
Lj1g0007064 Lotus japonicus
Lj2C174T8 Lonicera japonica
Lj3A338T40 Lonicera japonica
Lj3g0014894 Lotus japonicus
Lj3P338T12 Lonicera japonica
Lj4g0009029 Lotus japonicus
Lj4g0014781 Lotus japonicus
Lj7A505T29 Lonicera japonica
Lj9C594G4 Lonicera japonica
LjContig00001g0001336 Lotus japonicus
LjContig00001g0023327 Lotus japonicus
LjContig00312_ERROPOS870357g0013551 Lotus japonicus
LjContig00312_ERROPOS870357g0027559 Lotus japonicus
Lsat_1_v5_gn_3_138900 Lactuca sativa
Lsat_1_v5_gn_3_9661 Lactuca sativa
Lsat_1_v5_gn_5_108040 Lactuca sativa
Lsat_1_v5_gn_7_2481 Lactuca sativa
Manes.01G250400 Manihot esculenta
Manes.02G014100 Manihot esculenta
Manes.02G014200 Manihot esculenta
Manes.05G027301 Manihot esculenta
Mapoly0143s0026 Marchantia polymorpha
MBI06_g04296_MAGBIO Magnolia biondii
MBI07_g06329_MAGBIO Magnolia biondii
MBI07_g06330_MAGBIO Magnolia biondii
MBI15_g19879_MAGBIO Magnolia biondii
MCO07G452 Micromonas commoda
MD00G1094600 Malus domestica
MD01G1074000 Malus domestica
MD06G1098100 Malus domestica
MD07G1142700 Malus domestica
MD08G1128900 Malus domestica
MD08G1129600 Malus domestica
MD08G1130100 Malus domestica
MD14G1117200 Malus domestica
MD15G1108200 Malus domestica
Medtr5g009740 Medicago truncatula
Medtr5g009750 Medicago truncatula
Medtr8g028230 Medicago truncatula
MELO3C005731.2 Cucumis melo
MELO3C008160.2 Cucumis melo
Migut.A00692 Erythranthe guttata
Migut.B01817 Erythranthe guttata
Migut.B01818 Erythranthe guttata
Migut.B01819 Erythranthe guttata
Migut.E01260 Erythranthe guttata
Migut.E01261 Erythranthe guttata
MSTRG.11943 Avicennia marina
MSTRG.17310 Avicennia marina
MSTRG.20879 Avicennia marina
MSTRG.20880 Avicennia marina
MSTRG.25649 Avicennia marina
Nitab4.5_0000223g0010 Nicotiana tabacum
Nitab4.5_0000305g0310 Nicotiana tabacum
Nitab4.5_0000492g0140 Nicotiana tabacum
Nitab4.5_0002026g0080 Nicotiana tabacum
Nitab4.5_0002564g0050 Nicotiana tabacum
Nitab4.5_0004613g0060 Nicotiana tabacum
Nitab4.5_0004629g0090 Nicotiana tabacum
Nn1g01767 Nelumbo nucifera
Nn7g37348 Nelumbo nucifera
Nn7g37350 Nelumbo nucifera
Oeu008835.1 Olea europaea
Oeu033237.1 Olea europaea
Oeu063050.1 Olea europaea
Oeu063667.1 Olea europaea
Oeu063668.1 Olea europaea
Os02g0260500 Oryza sativa ssp. japonica
Os06g0158700 Oryza sativa ssp. japonica
Os06g0507900 Oryza sativa ssp. japonica
Peaxi162Scf00029g02519 Petunia axillaris
Peaxi162Scf00074g01418 Petunia axillaris
Peaxi162Scf01012g00235 Petunia axillaris
PGR031G2389 Punica granatum
PGR042G3251 Punica granatum
PGSC0003DMG400000084 Solanum tuberosum
PGSC0003DMG400007048 Solanum tuberosum
PGSC0003DMG400012313 Solanum tuberosum
PGSC0003DMG400041185 Solanum tuberosum
PGSC0003DMG401032495 Solanum tuberosum
Phvul.002G161700 Phaseolus vulgaris
Phvul.002G161800 Phaseolus vulgaris
Phvul.006G109400 Phaseolus vulgaris
Phvul.010G107800 Phaseolus vulgaris
Potri.001G096200 Populus trichocarpa
Potri.002G166600 Populus trichocarpa
Potri.003G135000 Populus trichocarpa
Potri.003G135100 Populus trichocarpa
Potri.014G093400 Populus trichocarpa
Pp3c1_2350 Physcomitrium patens
PRCOL_00003773 Prasinoderma coloniale
Prupe.1G460500 Prunus persica
Prupe.2G182100 Prunus persica
Prupe.5G111800 Prunus persica
Prupe.5G111900 Prunus persica
Psat2g033040 Pisum sativum
Psat2g184280 Pisum sativum
Psat3g004680 Pisum sativum
Psat4g158200 Pisum sativum
PSO063G5404 Papaver somniferum
PSO135G0588 Papaver somniferum
PSO170G4506 Papaver somniferum
PSO384G2039 Papaver somniferum
PSO384G4702 Papaver somniferum
QL02p032078 Quercus lobata
QL02p032149 Quercus lobata
QL04p057867 Quercus lobata
QL10p040340 Quercus lobata
RcHm_v2.0_Chr1g0358461 Rosa chinensis
RcHm_v2.0_Chr5g0061641 Rosa chinensis
RcHm_v2.0_Chr6g0304921 Rosa chinensis
RcHm_v2.0_Chr7g0195901 Rosa chinensis
RcHm_v2.0_Chr7g0195911 Rosa chinensis
Rhsim02G0238800 Rhododendron simsii
Rhsim07G0008500 Rhododendron simsii
Rhsim07G0008600 Rhododendron simsii
Sabra01G0072200 Salix brachista
Sabra02G0145000 Salix brachista
Sabra03G0097200 Salix brachista
Sabra03G0097400 Salix brachista
Sabra14G0067800 Salix brachista
SalBow1G6025 Salvia bowleyana
SalBow1G7989 Salvia bowleyana
SalBow1G8342 Salvia bowleyana
SalBow3G1410 Salvia bowleyana
SalBow3G2208 Salvia bowleyana
SalBow5G0911 Salvia bowleyana
Sc01g0003060 Simmondsia chinensis
Sc01g0003070 Simmondsia chinensis
Sc01g0010010 Simmondsia chinensis
Sc01g0010020 Simmondsia chinensis
Sc22g0005250 Simmondsia chinensis
Sc23g0002410 Simmondsia chinensis
Sed0013897 Sechium edule
Sed0019429 Sechium edule
Sed0026937 Sechium edule
Sed0027889 Sechium edule
SEGI_29517 Sequoiadendron giganteum
SEGI_37763 Sequoiadendron giganteum
SGA_v2.0_scaffold173G39117 Striga asiatica
SGA_v2.0_scaffold4G02266 Striga asiatica
SGA_v2.0_scaffold4G02267 Striga asiatica
SGA_v2.0_scaffold95G28797 Striga asiatica
SHI07043 Sapria himalayana
SMO364G0470 Selaginella moellendorffii
Solyc01g095390.3 Solanum lycopersicum
Solyc07g061860.3 Solanum lycopersicum
Solyc08g081830.3 Solanum lycopersicum
Solyc11g062280.2 Solanum lycopersicum
Sopen01g039150 Solanum pennellii
Sopen08g030120 Solanum pennellii
Sopen11g024260 Solanum pennellii
Sp2g00550 Schrenkiella parvula
Sp4g28300 Schrenkiella parvula
Sp7g00420 Schrenkiella parvula
TAR629G2645 Trochodendron aralioides
TAR636G2610 Trochodendron aralioides
THA.LOC104802053 Tarenaya hassleriana
THA.LOC104809347 Tarenaya hassleriana
THA.LOC104817328 Tarenaya hassleriana
THA.LOC104817743 Tarenaya hassleriana
Thecc.01G349200 Theobroma cacao
Thecc.02G012600 Theobroma cacao
Thecc.03G290400 Theobroma cacao
Thecc.03G290500 Theobroma cacao
Thhalv10001424m.g Eutrema salsugineum
Thhalv10023367m.g Eutrema salsugineum
Thhalv10023764m.g Eutrema salsugineum
Thhalv10027655m.g Eutrema salsugineum
TPR.G21266 Trifolium pratense
TPR.G32972 Trifolium pratense
TPR.G4762 Trifolium pratense
TPR.G6688 Trifolium pratense
TPR.G6700 Trifolium pratense
TWI15G0184 Tripterygium wilfordii
TWI18G0300 Tripterygium wilfordii
TWI59G0643 Tripterygium wilfordii
TWI60G0303 Tripterygium wilfordii
TWI81G1025 Tripterygium wilfordii
unitig_37.g12231 Utricularia gibba
unitig_46.g18540 Utricularia gibba
unitig_62.g23802 Utricularia gibba
vmacro11422 Vaccinium macrocarpon
vmacro13208 Vaccinium macrocarpon
vmacro13209 Vaccinium macrocarpon
vmacro13210 Vaccinium macrocarpon
VMungo0331G0912 Vigna mungo
VMungo0540G0443 Vigna mungo
VMungo1215G2099 Vigna mungo
VMungo1215G2718 Vigna mungo
Zm00001eb203850 Zea mays
Zm00001eb278050 Zea mays
Zm00001eb376190 Zea mays
Zm00001eb376220 Zea mays
Zm00001eb376250 Zea mays
Zm00001eb376260 Zea mays
Zm00001eb376310 Zea mays
Zm00001eb376320 Zea mays
Zm00001eb376350 Zea mays
Zm00001eb376910 Zea mays
Zm00001eb376940 Zea mays

User provided reference genes

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