Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02180 Brassica napus
A03p19550 Brassica napus
A04p26950 Brassica napus
A05p10210 Brassica napus
A08p09360 Brassica napus
A08p22380 Brassica napus
A09p34050 Brassica napus
Aa31LG6G13540 Aethionema arabicum
Aa31LG8G15490 Aethionema arabicum
Aa31LG9G15510 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3357 Anthoceros agrestis
Actinidia12110 Actinidia chinensis
Actinidia14776 Actinidia chinensis
Actinidia24577 Actinidia chinensis
Actinidia24578 Actinidia chinensis
Actinidia27738 Actinidia chinensis
Actinidia28572 Actinidia chinensis
Actinidia36544 Actinidia chinensis
Ah.03g139280 Amaranthus hybridus
Ah.03g139290 Amaranthus hybridus
Ah.07g201060 Amaranthus hybridus
Ah.12g055550 Amaranthus hybridus
AL1G46230 Arabidopsis lyrata
AL4G31580 Arabidopsis lyrata
AL7G14280 Arabidopsis lyrata
Aqoxy3G02160 Aquilegia oxysepala
Aqoxy3G04023 Aquilegia oxysepala
Aqoxy5G01683 Aquilegia oxysepala
Aqoxy6G01034 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0VM5CY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AFV1R8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AVA03Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1LL80 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G7EQ73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J541GW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KB1QEP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z1Y8P7 Arachis hypogaea
AT1G32150 Arabidopsis thaliana
AT2G35530 Arabidopsis thaliana
AT4G36730 Arabidopsis thaliana
ATR0021G037 Amborella trichopoda
ATR0733G172 Amborella trichopoda
ATR0829G146 Amborella trichopoda
Atru.chr3.533 Acer truncatum
Atru.chr3.534 Acer truncatum
Atru.chr6.1535 Acer truncatum
AUR62003183 Chenopodium quinoa
AUR62007361 Chenopodium quinoa
AUR62008004 Chenopodium quinoa
AUR62018627 Chenopodium quinoa
AUR62039832 Chenopodium quinoa
BcaB02g09421 Brassica carinata
BcaB03g12373 Brassica carinata
BcaB04g17999 Brassica carinata
BcaB07g32879 Brassica carinata
BcaC01g00445 Brassica carinata
BcaC01g05727 Brassica carinata
BcaC02g07699 Brassica carinata
BcaC02g07703 Brassica carinata
BcaC02g07706 Brassica carinata
BcaC02g11657 Brassica carinata
BcaC05g27242 Brassica carinata
BcaC07g37634 Brassica carinata
BcaNung00705 Brassica carinata
BcaNung04435 Brassica carinata
BcaNung06143 Brassica carinata
BolC1t00228H Brassica oleracea
BolC3t14678H Brassica oleracea
BolC3t20245H Brassica oleracea
BolC4t22914H Brassica oleracea
BolC4t27921H Brassica oleracea
BolC5t31879H Brassica oleracea
BolC8t48004H Brassica oleracea
BraA01t00207Z Brassica rapa
BraA03t11208Z Brassica rapa
BraA04t18194Z Brassica rapa
BraA05t19961Z Brassica rapa
BraA08t34195Z Brassica rapa
BraA09t38951Z Brassica rapa
C01p02370 Brassica napus
C03p22790 Brassica napus
C03p79920 Brassica napus
C04p12660 Brassica napus
C04p64340 Brassica napus
C04p64350 Brassica napus
C04p64380 Brassica napus
C05p31550 Brassica napus
CAN.G137.28 Capsicum annuum
CAN.G358.125 Capsicum annuum
CAN.G53.41 Capsicum annuum
CAN.G773.31 Capsicum annuum
CANSAT01G1094 Cannabis sativa
CANSAT21G2600 Cannabis sativa
CARHR031500 Cardamine hirsuta
CARHR031510 Cardamine hirsuta
CARHR129700 Cardamine hirsuta
CARHR245080 Cardamine hirsuta
Carub.0001s3047 Capsella rubella
Carub.0004s1722 Capsella rubella
Carub.0007s0359 Capsella rubella
Ca_25167_v3 Cicer arietinum L.
Ca_26385_v3 Cicer arietinum L.
CBR_g29467 Chara braunii
CBR_g29468 Chara braunii
CBR_g29470 Chara braunii
CBR_g30825 Chara braunii
Cc07_g09170 Coffea canephora
Cc08_g03540 Coffea canephora
CDE04G0505 Ceratophyllum demersum
CDE06G0881 Ceratophyllum demersum
CDE06G2237 Ceratophyllum demersum
CDE07G1225 Ceratophyllum demersum
Cfa004158 Carpinus fangiana
Cfa010064 Carpinus fangiana
Cfa012529 Carpinus fangiana
Cfa019338 Carpinus fangiana
Ciclev10001333m.g Citrus clementina
Ciclev10025963m.g Citrus clementina
CiPaw.01G034500 Carya illinoinensis
CiPaw.02G015400 Carya illinoinensis
CiPaw.11G098900 Carya illinoinensis
CiPaw.12G068800 Carya illinoinensis
ClCG01G019360 Citrullus lanatus
ClCG09G011600 Citrullus lanatus
ClCG10G001250 Citrullus lanatus
COL.COLO4_16931 Corchorus olitorius
COL.COLO4_22118 Corchorus olitorius
COL.COLO4_32205 Corchorus olitorius
Cpa.g.sc158.7 Carica papaya
Cpa.g.sc2741.1 Carica papaya
Cpa.g.sc787.2 Carica papaya
CsaV3_3G001310 Cucumis sativus L.
CsaV3_3G048810 Cucumis sativus L.
CsaV3_6G046080 Cucumis sativus L.
CSS0014012 Camellia sinensis var. sinensis
CSS0014466 Camellia sinensis var. sinensis
CSS0021144 Camellia sinensis var. sinensis
CSS0040681 Camellia sinensis var. sinensis
CSS0041697 Camellia sinensis var. sinensis
CSS0044644 Camellia sinensis var. sinensis
DCAR_004268 Daucus carota
DCAR_008218 Daucus carota
DCAR_022100 Daucus carota
DCAR_025934 Daucus carota
Dinv25272 Davidia involucrata
Dinv26808 Davidia involucrata
Dinv29008 Davidia involucrata
Dinv29009 Davidia involucrata
Dinv36055 Davidia involucrata
Dinv39958 Davidia involucrata
Dinv42088 Davidia involucrata
Duzib068G0264 Durio zibethinus
Duzib084G0813 Durio zibethinus
Duzib147G1182 Durio zibethinus
Duzib187G0107 Durio zibethinus
Duzib205G1077 Durio zibethinus
Duzib264G0166 Durio zibethinus
ECA232G3366 Erigeron canadensis
ECA238G4073 Erigeron canadensis
ECA240G2874 Erigeron canadensis
ECA246G3010 Erigeron canadensis
EL10Ac5g12000 Beta vulgaris
EL10Ac6g14910 Beta vulgaris
Eucgr.E00223 Eucalyptus grandis
Eucgr.H01256 Eucalyptus grandis
FAN04G0112 Fragaria x ananassa
FAN08G0121 Fragaria x ananassa
FAN13G2632 Fragaria x ananassa
FAN18G3381 Fragaria x ananassa
FAN18G3520 Fragaria x ananassa
FAN19G1027 Fragaria x ananassa
FAN23G1882 Fragaria x ananassa
FAN26G2630 Fragaria x ananassa
FAN28G1442 Fragaria x ananassa
FvH4_1g13880 Fragaria vesca
FvH4_5g23200 Fragaria vesca
Glyma.01G013600 Glycine max
Glyma.01G177400 Glycine max
Glyma.02G058800 Glycine max
Glyma.05G245400 Glycine max
Glyma.08G265600 Glycine max
Glyma.09G208500 Glycine max
Glyma.10G214300 Glycine max
Glyma.11G065000 Glycine max
Glyma.16G095200 Glycine max
Glyma.16G141500 Glycine max
Gohir.A03G000030 Gossypium hirsutum
Gohir.A08G153300 Gossypium hirsutum
Gohir.A11G186100 Gossypium hirsutum
Gohir.A12G065466 Gossypium hirsutum
Gohir.D03G176500 Gossypium hirsutum
Gohir.D08G174200 Gossypium hirsutum
Gohir.D11G192700 Gossypium hirsutum
Gohir.D12G065600 Gossypium hirsutum
Gorai.003G185700 Gossypium raimondii
Gorai.004G181900 Gossypium raimondii
Gorai.007G205700 Gossypium raimondii
Gorai.008G068900 Gossypium raimondii
GSVIVG01009665001 Vitis vinifera
GSVIVG01013053001 Vitis vinifera
GSVIVG01019009001 Vitis vinifera
HanXRQChr03g0069071 Helianthus annuus
HanXRQChr03g0081411 Helianthus annuus
HanXRQChr03g0081421 Helianthus annuus
HanXRQChr03g0081571 Helianthus annuus
HanXRQChr10g0283261 Helianthus annuus
HanXRQChr11g0324881 Helianthus annuus
HanXRQChr11g0338871 Helianthus annuus
HanXRQChr13g0412591 Helianthus annuus
HanXRQChr13g0423991 Helianthus annuus
HanXRQChr17g0537931 Helianthus annuus
HanXRQChr17g0563711 Helianthus annuus
Haze_08134 Corylus avellana
Haze_15122 Corylus avellana
Hma1.2p1_0180F.1_g079750 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086580 Hydrangea macrophylla
Hma1.2p1_0225F.1_g094750 Hydrangea macrophylla
Hma1.2p1_0308F.1_g120310 Hydrangea macrophylla
Hma1.2p1_0652F.1_g195860 Hydrangea macrophylla
Hma1.2p1_0870F.1_g230920 Hydrangea macrophylla
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla
Hma1.2p1_1569F.1_g291140 Hydrangea macrophylla
Hma1.2p1_1645F.1_g295350 Hydrangea macrophylla
Hma1.2p1_3707F.1_g337320 Hydrangea macrophylla
Hma1.2p1_3736F.1_g337430 Hydrangea macrophylla
HPP92_009017 Vanilla planifolia
HPP92_012822 Vanilla planifolia
HPP92_015913 Vanilla planifolia
HPP92_015942 Vanilla planifolia
Hund11171 Selenicereus undatus
Hund14381 Selenicereus undatus
Hund16578 Selenicereus undatus
Lalb_Chr05g0215701 Lupinus albus
Lalb_Chr05g0227641 Lupinus albus
Lalb_Chr09g0325441 Lupinus albus
Lalb_Chr09g0333611 Lupinus albus
Lalb_Chr09g0334641 Lupinus albus
Lalb_Chr16g0381001 Lupinus albus
Lj2A229T41 Lonicera japonica
Lj2g0001412 Lotus japonicus
Lj2g0012038 Lotus japonicus
Lj4C197T2 Lonicera japonica
Lj4g0000001 Lotus japonicus
Lj4g0008832 Lotus japonicus
Lj8A322G33 Lonicera japonica
Lsat_1_v5_gn_1_89820 Lactuca sativa
Lsat_1_v5_gn_3_20761 Lactuca sativa
Lsat_1_v5_gn_3_78600 Lactuca sativa
Lsat_1_v5_gn_4_153461 Lactuca sativa
Lsat_1_v5_gn_4_177440 Lactuca sativa
Lsat_1_v5_gn_5_62340 Lactuca sativa
Lsat_1_v5_gn_8_35700 Lactuca sativa
Lsat_1_v5_gn_8_93660 Lactuca sativa
Manes.13G136900 Manihot esculenta
Manes.15G191900 Manihot esculenta
Manes.15G192000 Manihot esculenta
Mapoly0015s0005 Marchantia polymorpha
MBI04_g20972_MAGBIO Magnolia biondii
MBI13_g04497_MAGBIO Magnolia biondii
MBI16_g35703_MAGBIO Magnolia biondii
MBI16_g37292_MAGBIO Magnolia biondii
MBI19_g32237_MAGBIO Magnolia biondii
MBI19_g32495_MAGBIO Magnolia biondii
MBI19_g41117_MAGBIO Magnolia biondii
MCO03G221 Micromonas commoda
MCO11G549 Micromonas commoda
MCO13G091 Micromonas commoda
MCO14G025 Micromonas commoda
MD06G1026900 Malus domestica
MD15G1266700 Malus domestica
MD16G1279200 Malus domestica
Medtr5g028850 Medicago truncatula
Medtr8g070820 Medicago truncatula
Medtr8g077950 Medicago truncatula
MELO3C003443.2 Cucumis melo
MELO3C007811.2 Cucumis melo
MELO3C013820.2 Cucumis melo
MELO3C029141.2 Cucumis melo
MELO3C032216.2 Cucumis melo
Migut.A00608 Erythranthe guttata
Migut.E01317 Erythranthe guttata
Migut.H00187 Erythranthe guttata
Migut.L00297 Erythranthe guttata
MSTRG.11904 Avicennia marina
MSTRG.15280 Avicennia marina
MSTRG.25695 Avicennia marina
MSTRG.2753 Avicennia marina
Nitab4.5_0000179g0100 Nicotiana tabacum
Nitab4.5_0000301g0070 Nicotiana tabacum
Nitab4.5_0000556g0270 Nicotiana tabacum
Nitab4.5_0000628g0080 Nicotiana tabacum
Nitab4.5_0001279g0170 Nicotiana tabacum
Nitab4.5_0002128g0040 Nicotiana tabacum
Nitab4.5_0003410g0090 Nicotiana tabacum
Nitab4.5_0004528g0040 Nicotiana tabacum
Nn1g00364 Nelumbo nucifera
Nn1g01860 Nelumbo nucifera
Nn1g05081 Nelumbo nucifera
Nn3g18441 Nelumbo nucifera
Nn3g19377 Nelumbo nucifera
Nn4g24488 Nelumbo nucifera
Nn5g29526 Nelumbo nucifera
Nn5g29527 Nelumbo nucifera
Oeu016701.2 Olea europaea
Oeu017087.1 Olea europaea
Oeu023589.1 Olea europaea
Oeu027098.1 Olea europaea
Oeu027099.1 Olea europaea
Oeu031080.1 Olea europaea
Oeu037894.1 Olea europaea
Os02g0128200 Oryza sativa ssp. japonica
Os03g0239400 Oryza sativa ssp. japonica
Os03g0809200 Oryza sativa ssp. japonica
Os07g0209800 Oryza sativa ssp. japonica
Os12g0233800 Oryza sativa ssp. japonica
Peaxi162Scf00008g00417 Petunia axillaris
Peaxi162Scf00045g00325 Petunia axillaris
Peaxi162Scf00045g00335 Petunia axillaris
Peaxi162Scf00052g00335 Petunia axillaris
Peaxi162Scf00427g00516 Petunia axillaris
PGR042G1020 Punica granatum
PGSC0003DMG400012660 Solanum tuberosum
PGSC0003DMG400018469 Solanum tuberosum
Phvul.002G136000 Phaseolus vulgaris
Phvul.003G252000 Phaseolus vulgaris
Phvul.003G273900 Phaseolus vulgaris
Potri.001G136000 Populus trichocarpa
Potri.003G097600 Populus trichocarpa
Potri.005G126000 Populus trichocarpa
Potri.007G029400 Populus trichocarpa
Pp3c18_16260 Physcomitrium patens
Pp3c18_19240 Physcomitrium patens
Pp3c21_5710 Physcomitrium patens
Pp3c21_5770 Physcomitrium patens
PRCOL_00000180 Prasinoderma coloniale
Prupe.5G027000 Prunus persica
Prupe.7G150700 Prunus persica
Psat0s1431g0080 Pisum sativum
Psat4g091720 Pisum sativum
Psat4g111720 Pisum sativum
PSO063G5354 Papaver somniferum
PSO170G2342 Papaver somniferum
PSO210G5020 Papaver somniferum
PSO700G0112 Papaver somniferum
PSO782G4644 Papaver somniferum
QL06p045359 Quercus lobata
QL12p001122 Quercus lobata
RcHm_v2.0_Chr2g0102191 Rosa chinensis
RcHm_v2.0_Chr6g0260881 Rosa chinensis
RcHm_v2.0_Chr7g0212131 Rosa chinensis
Rhsim07G0132900 Rhododendron simsii
Rhsim07G0133000 Rhododendron simsii
Rhsim11G0032400 Rhododendron simsii
Rhsim11G0173800 Rhododendron simsii
RhsimUnG0059100 Rhododendron simsii
Sabra01G0105200 Salix brachista
Sabra07G0025300 Salix brachista
Sc01g0006020 Simmondsia chinensis
Sc03g0000900 Simmondsia chinensis
Sed0004678 Sechium edule
Sed0005581 Sechium edule
Sed0015500 Sechium edule
Sed0016022 Sechium edule
Sed0017623 Sechium edule
Sed0024040 Sechium edule
SEGI_12461 Sequoiadendron giganteum
SEGI_34798 Sequoiadendron giganteum
SGA_v2.0_scaffold33G13393 Striga asiatica
SGA_v2.0_scaffold89G27434 Striga asiatica
SGA_v2.0_scaffold96G29039 Striga asiatica
SHI20191 Sapria himalayana
SMO220G0004 Selaginella moellendorffii
SMO339G0025 Selaginella moellendorffii
Solyc02g062950.3 Solanum lycopersicum
Solyc02g085610.4 Solanum lycopersicum
Solyc08g005290.3 Solanum lycopersicum
Solyc08g076100.4 Solanum lycopersicum
Sopen02g013990 Solanum pennellii
Sopen02g030280 Solanum pennellii
Sopen08g001310 Solanum pennellii
Sopen08g024750 Solanum pennellii
Sp1g27810 Schrenkiella parvula
Sp4g17740 Schrenkiella parvula
Sp7g34390 Schrenkiella parvula
TAR366G0001 Trochodendron aralioides
TAR381G1105 Trochodendron aralioides
TAR622G0525 Trochodendron aralioides
TAR625G0297 Trochodendron aralioides
TAR628G0378 Trochodendron aralioides
TAR628G1708 Trochodendron aralioides
TAR629G1385 Trochodendron aralioides
THA.LOC104807546 Tarenaya hassleriana
THA.LOC104812761 Tarenaya hassleriana
THA.LOC104819800 Tarenaya hassleriana
Thecc.01G039900 Theobroma cacao
Thecc.03G311000 Theobroma cacao
Thhalv10007879m.g Eutrema salsugineum
Thhalv10016740m.g Eutrema salsugineum
Thhalv10025733m.g Eutrema salsugineum
TPR.G10365 Trifolium pratense
TPR.G12972 Trifolium pratense
TPR.G20292 Trifolium pratense
TPR.G28598 Trifolium pratense
TPR.G40744 Trifolium pratense
TPR.G6030 Trifolium pratense
TWI09G0088 Tripterygium wilfordii
TWI15G0913 Tripterygium wilfordii
TWI73G0633 Tripterygium wilfordii
TWI81G0099 Tripterygium wilfordii
unitig_0.g2613 Utricularia gibba
unitig_32.g10656 Utricularia gibba
unitig_52.g17230 Utricularia gibba
unitig_699.g19757 Utricularia gibba
unitig_748.g8518 Utricularia gibba
unitig_88.g27807 Utricularia gibba
unitig_88.g27808 Utricularia gibba
vmacro14206 Vaccinium macrocarpon
VMungo0207G0001 Vigna mungo
VMungo0251G1353 Vigna mungo
VMungo0251G2841 Vigna mungo
VMungo0647G2423 Vigna mungo
VMungo1215G1612 Vigna mungo
Zm00001eb010190 Zea mays
Zm00001eb061930 Zea mays
Zm00001eb095290 Zea mays
Zm00001eb129290 Zea mays
Zm00001eb133640 Zea mays
Zm00001eb208830 Zea mays
Zm00001eb231040 Zea mays
Zm00001eb303220 Zea mays
Zm00001eb399090 Zea mays
Zm00001eb411700 Zea mays
Zm00001eb413650 Zea mays

User provided reference genes

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