Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36540 Brassica napus
A06p20580 Brassica napus
A06p39950 Brassica napus
Aa31LG2G3960 Aethionema arabicum
Aa31LG4G15910 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2070 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.142 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4076 Anthoceros agrestis
Actinidia01984 Actinidia chinensis
Actinidia07815 Actinidia chinensis
Actinidia16572 Actinidia chinensis
Actinidia19917 Actinidia chinensis
Actinidia25139 Actinidia chinensis
Actinidia38839 Actinidia chinensis
Ah.03g139080 Amaranthus hybridus
Ah.08g220460 Amaranthus hybridus
Ah.10g032030 Amaranthus hybridus
AL5G19375 Arabidopsis lyrata
AL5G26190 Arabidopsis lyrata
Aqoxy1G00717 Aquilegia oxysepala
Aqoxy3G03580 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7MKZ5R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6MTWF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D91BSU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E3NNBV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EBDX7F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G79KWN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IXM19M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JMYD5Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JTF09J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SD1YX7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WLHM97 Arachis hypogaea
AT3G29320 Arabidopsis thaliana
AT3G46970 Arabidopsis thaliana
ATR0064G110 Amborella trichopoda
ATR0618G433 Amborella trichopoda
ATR0730G102 Amborella trichopoda
Atru.chr11.1673 Acer truncatum
Atru.chr11.1675 Acer truncatum
Atru.chr3.4064 Acer truncatum
Atru.chr8.407 Acer truncatum
AUR62001699 Chenopodium quinoa
AUR62003120 Chenopodium quinoa
AUR62007939 Chenopodium quinoa
AUR62018166 Chenopodium quinoa
AUR62020083 Chenopodium quinoa
AUR62042432 Chenopodium quinoa
BcaB07g30083 Brassica carinata
BcaC03g17572 Brassica carinata
BcaC06g30872 Brassica carinata
BcaC06g33687 Brassica carinata
BcaC08g46305 Brassica carinata
BolC2t11609H Brassica oleracea
BolC3t19401H Brassica oleracea
BolC6t39295H Brassica oleracea
BolC6t39296H Brassica oleracea
BolC7t44343H Brassica oleracea
BraA02t08650Z Brassica rapa
BraA06t25136Z Brassica rapa
BraA06t26910Z Brassica rapa
C02p55510 Brassica napus
C03p71160 Brassica napus
C06p41290 Brassica napus
C06p41300 Brassica napus
C07p38210 Brassica napus
CAN.G1340.1 Capsicum annuum
CAN.G155.10 Capsicum annuum
CAN.G273.23 Capsicum annuum
CAN.G367.1 Capsicum annuum
CAN.G464.7 Capsicum annuum
CAN.G529.54 Capsicum annuum
CANSAT35G2020 Cannabis sativa
CANSAT54G1457 Cannabis sativa
CANSAT64G1277 Cannabis sativa
CARHR154040 Cardamine hirsuta
CARHR155610 Cardamine hirsuta
Carub.0005s0803 Capsella rubella
Carub.0005s1319 Capsella rubella
Ca_00360_v3 Cicer arietinum L.
Ca_04297_v3 Cicer arietinum L.
Ca_14899_v3 Cicer arietinum L.
Ca_18810_v3 Cicer arietinum L.
CBR_g12053 Chara braunii
CBR_g46894 Chara braunii
CBR_g49315 Chara braunii
Cc01_g13760 Coffea canephora
Cc02_g13830 Coffea canephora
Cc07_g04030 Coffea canephora
Cc11_g12220 Coffea canephora
CDE02G4731 Ceratophyllum demersum
CDE04G1994 Ceratophyllum demersum
CDE04G2520 Ceratophyllum demersum
CDE05G3355 Ceratophyllum demersum
CDE07G2046 Ceratophyllum demersum
CDE09G0851 Ceratophyllum demersum
CDE09G1189 Ceratophyllum demersum
CDE10G1319 Ceratophyllum demersum
Cfa007638 Carpinus fangiana
Cfa011637 Carpinus fangiana
Cfa027134 Carpinus fangiana
Ciclev10010975m.g Citrus clementina
Ciclev10027815m.g Citrus clementina
Ciclev10033567m.g Citrus clementina
CiPaw.03G090700 Carya illinoinensis
CiPaw.13G082500 Carya illinoinensis
CiPaw.14G062300 Carya illinoinensis
ClCG02G019750 Citrullus lanatus
ClCG03G008010 Citrullus lanatus
ClCG05G023800 Citrullus lanatus
ClCG07G007310 Citrullus lanatus
COL.COLO4_19091 Corchorus olitorius
COL.COLO4_21389 Corchorus olitorius
COL.COLO4_27916 Corchorus olitorius
COL.COLO4_31413 Corchorus olitorius
COL.COLO4_33013 Corchorus olitorius
Cpa.g.sc112.64 Carica papaya
Cpa.g.sc14.158 Carica papaya
Cpa.g.sc27.5 Carica papaya
Cre07.g336950 Chlamydomonas reinhardtii
Cre12.g552200 Chlamydomonas reinhardtii
CsaV3_1G012560 Cucumis sativus L.
CsaV3_4G008840 Cucumis sativus L.
CsaV3_5G033210 Cucumis sativus L.
CsaV3_6G016450 Cucumis sativus L.
CSS0001034 Camellia sinensis var. sinensis
CSS0001957 Camellia sinensis var. sinensis
CSS0006090 Camellia sinensis var. sinensis
CSS0007362 Camellia sinensis var. sinensis
CSS0009326 Camellia sinensis var. sinensis
CSS0014779 Camellia sinensis var. sinensis
CSS0019691 Camellia sinensis var. sinensis
CSS0022499 Camellia sinensis var. sinensis
CSS0025902 Camellia sinensis var. sinensis
CSS0029883 Camellia sinensis var. sinensis
CSS0030684 Camellia sinensis var. sinensis
CSS0030772 Camellia sinensis var. sinensis
DCAR_004047 Daucus carota
DCAR_007400 Daucus carota
DCAR_025414 Daucus carota
DCAR_030028 Daucus carota
Dinv16714 Davidia involucrata
Dinv28602 Davidia involucrata
Dinv28603 Davidia involucrata
Dinv33816 Davidia involucrata
Dinv40600 Davidia involucrata
Duzib147G0420 Durio zibethinus
Duzib150G0874 Durio zibethinus
Duzib160G0811 Durio zibethinus
Duzib192G0388 Durio zibethinus
Duzib264G0328 Durio zibethinus
ECA233G2632 Erigeron canadensis
ECA234G0720 Erigeron canadensis
ECA236G2025 Erigeron canadensis
ECA236G3003 Erigeron canadensis
ECA246G0563 Erigeron canadensis
EL10Ac2g03108 Beta vulgaris
EL10Ac6g14967 Beta vulgaris
EL10Ac7g16111 Beta vulgaris
Eucgr.B02278 Eucalyptus grandis
Eucgr.B03166 Eucalyptus grandis
Eucgr.J01374 Eucalyptus grandis
FAN05G2636 Fragaria x ananassa
FAN09G1745 Fragaria x ananassa
FAN09G3772 Fragaria x ananassa
FAN09G4086 Fragaria x ananassa
FAN10G1574 Fragaria x ananassa
FAN11G0658 Fragaria x ananassa
FAN11G3455 Fragaria x ananassa
FAN12G3097 Fragaria x ananassa
FAN14G5280 Fragaria x ananassa
FAN16G0303 Fragaria x ananassa
FAN16G2036 Fragaria x ananassa
FAN17G1602 Fragaria x ananassa
FAN21G1544 Fragaria x ananassa
FAN21G3147 Fragaria x ananassa
FAN21G3311 Fragaria x ananassa
FAN22G1800 Fragaria x ananassa
FAN23G1551 Fragaria x ananassa
FvH4_2g24510 Fragaria vesca
FvH4_3g08650 Fragaria vesca
FvH4_3g37910 Fragaria vesca
FvH4_4g30370 Fragaria vesca
FvH4_6g47260 Fragaria vesca
Glyma.08G334000 Glycine max
Glyma.13G057800 Glycine max
Glyma.13G235600 Glycine max
Glyma.18G067200 Glycine max
Glyma.19G028400 Glycine max
Glyma.20G026700 Glycine max
Gohir.A05G159000 Gossypium hirsutum
Gohir.A09G010700 Gossypium hirsutum
Gohir.A13G080600 Gossypium hirsutum
Gohir.A13G225200 Gossypium hirsutum
Gohir.D05G161700 Gossypium hirsutum
Gohir.D09G009800 Gossypium hirsutum
Gohir.D13G080400 Gossypium hirsutum
Gohir.D13G230200 Gossypium hirsutum
Gorai.006G011500 Gossypium raimondii
Gorai.009G166800 Gossypium raimondii
Gorai.013G092200 Gossypium raimondii
Gorai.013G260900 Gossypium raimondii
GSVIVG01011504001 Vitis vinifera
GSVIVG01012194001 Vitis vinifera
GSVIVG01021111001 Vitis vinifera
GSVIVG01024804001 Vitis vinifera
GSVIVG01026022001 Vitis vinifera
HanXRQChr04g0117131 Helianthus annuus
HanXRQChr05g0135521 Helianthus annuus
HanXRQChr12g0362961 Helianthus annuus
HanXRQChr17g0546671 Helianthus annuus
Haze_14459 Corylus avellana
Haze_24243 Corylus avellana
Haze_26670 Corylus avellana
Haze_26774 Corylus avellana
Hma1.2p1_0183F.1_g080910 Hydrangea macrophylla
Hma1.2p1_0481F.1_g161940 Hydrangea macrophylla
Hma1.2p1_0543F.1_g175235 Hydrangea macrophylla
Hma1.2p1_0558F.1_g178500 Hydrangea macrophylla
Hma1.2p1_2883F.1_g329850 Hydrangea macrophylla
HPP92_012625 Vanilla planifolia
HPP92_018605 Vanilla planifolia
Hund05850 Selenicereus undatus
Hund18864 Selenicereus undatus
Lalb_Chr05g0220071 Lupinus albus
Lalb_Chr06g0175051 Lupinus albus
Lalb_Chr15g0082621 Lupinus albus
Lj2A1075G33 Lonicera japonica
Lj2g0005477 Lotus japonicus
Lj2g0027103 Lotus japonicus
Lj4g0014071 Lotus japonicus
Lj6A781T31 Lonicera japonica
Lj6g0001493 Lotus japonicus
Lj6g0016611 Lotus japonicus
Lsat_1_v5_gn_0_6280 Lactuca sativa
Lsat_1_v5_gn_3_97940 Lactuca sativa
Lsat_1_v5_gn_5_65300 Lactuca sativa
Lsat_1_v5_gn_7_22741 Lactuca sativa
Lsat_1_v5_gn_8_102480 Lactuca sativa
Lsat_1_v5_gn_8_47400 Lactuca sativa
Lsat_1_v5_gn_8_72100 Lactuca sativa
Lsat_1_v5_gn_8_84241 Lactuca sativa
Lsat_1_v5_gn_9_101000 Lactuca sativa
Manes.02G052200 Manihot esculenta
Manes.02G052240 Manihot esculenta
Manes.02G052280 Manihot esculenta
Manes.02G052360 Manihot esculenta
Manes.02G052520 Manihot esculenta
Manes.02G052600 Manihot esculenta
Manes.02G122500 Manihot esculenta
Manes.05G108500 Manihot esculenta
Manes.17G049200 Manihot esculenta
Mapoly0007s0255 Marchantia polymorpha
Mapoly0038s0107 Marchantia polymorpha
Mapoly0096s0051 Marchantia polymorpha
MBI05_g03453_MAGBIO Magnolia biondii
MBI07_g17467_MAGBIO Magnolia biondii
MBI07_g44129_MAGBIO Magnolia biondii
MBI07_g47700_MAGBIO Magnolia biondii
MCO02G349 Micromonas commoda
MCO02G462 Micromonas commoda
MCO03G482 Micromonas commoda
MD00G1156200 Malus domestica
MD03G1077800 Malus domestica
MD05G1167500 Malus domestica
MD09G1062600 Malus domestica
MD10G1289300 Malus domestica
MD11G1082200 Malus domestica
MD16G1063300 Malus domestica
Medtr0288s0040 Medicago truncatula
Medtr0475s0040 Medicago truncatula
Medtr2g014460 Medicago truncatula
Medtr3g462340 Medicago truncatula
Medtr4g082950 Medicago truncatula
MELO3C002626.2 Cucumis melo
MELO3C012142.2 Cucumis melo
MELO3C018948.2 Cucumis melo
MELO3C025876.2 Cucumis melo
Migut.H00646 Erythranthe guttata
Migut.L01207 Erythranthe guttata
Migut.M01109 Erythranthe guttata
Migut.N00814 Erythranthe guttata
MSTRG.12672 Avicennia marina
MSTRG.23895 Avicennia marina
MSTRG.7756 Avicennia marina
Nitab4.5_0000154g0300 Nicotiana tabacum
Nitab4.5_0000454g0020 Nicotiana tabacum
Nitab4.5_0001955g0150 Nicotiana tabacum
Nitab4.5_0002362g0010 Nicotiana tabacum
Nitab4.5_0004304g0040 Nicotiana tabacum
Nitab4.5_0004359g0030 Nicotiana tabacum
Nitab4.5_0005196g0060 Nicotiana tabacum
Nitab4.5_0008253g0030 Nicotiana tabacum
Nn1g04232 Nelumbo nucifera
Nn2g11360 Nelumbo nucifera
Nn4g23373 Nelumbo nucifera
Oeu012408.1 Olea europaea
Oeu029177.1 Olea europaea
Oeu035011.1 Olea europaea
Oeu039460.2 Olea europaea
Os01g0851700 Oryza sativa ssp. japonica
Os03g0758100 Oryza sativa ssp. japonica
Peaxi162Scf00116g01620 Petunia axillaris
Peaxi162Scf00116g01621 Petunia axillaris
Peaxi162Scf00314g10019 Petunia axillaris
Peaxi162Scf00451g00330 Petunia axillaris
Peaxi162Scf00926g00112 Petunia axillaris
PGR083G1392 Punica granatum
PGR102G2194 Punica granatum
PGR102G2405 Punica granatum
PGSC0003DMG400002479 Solanum tuberosum
PGSC0003DMG400003495 Solanum tuberosum
PGSC0003DMG400007782 Solanum tuberosum
PGSC0003DMG400028382 Solanum tuberosum
PGSC0003DMG400031765 Solanum tuberosum
Phvul.002G168400 Phaseolus vulgaris
Phvul.004G034400 Phaseolus vulgaris
Phvul.006G064100 Phaseolus vulgaris
Phvul.006G182300 Phaseolus vulgaris
Potri.004G048600 Populus trichocarpa
Potri.004G123600 Populus trichocarpa
Potri.008G093901 Populus trichocarpa
Potri.009G041800 Populus trichocarpa
Potri.010G160200 Populus trichocarpa
Pp3c1_12800 Physcomitrium patens
Pp3c2_14470 Physcomitrium patens
Pp3c6_14860 Physcomitrium patens
Pp3c6_24700 Physcomitrium patens
Pp3c6_5330 Physcomitrium patens
PRCOL_00003281 Prasinoderma coloniale
PRCOL_00004468 Prasinoderma coloniale
PRCOL_00006748 Prasinoderma coloniale
Prupe.1G009700 Prunus persica
Prupe.1G283400 Prunus persica
Prupe.2G199200 Prunus persica
Prupe.3G257600 Prunus persica
Prupe.4G052400 Prunus persica
Prupe.6G062600 Prunus persica
Prupe.8G237100 Prunus persica
Psat1g066720 Pisum sativum
Psat1g204400 Pisum sativum
Psat2g090600 Pisum sativum
Psat5g162400 Pisum sativum
Psat6g142320 Pisum sativum
Psat7g134200 Pisum sativum
PSO063G5572 Papaver somniferum
PSO339G1830 Papaver somniferum
PSO384G0576 Papaver somniferum
PSO409G0024 Papaver somniferum
QL01p027255 Quercus lobata
QL01p027296 Quercus lobata
QL02p039954 Quercus lobata
QL03p071161 Quercus lobata
QL06p032672 Quercus lobata
QL12p007166 Quercus lobata
RcHm_v2.0_Chr1g0375781 Rosa chinensis
RcHm_v2.0_Chr2g0166331 Rosa chinensis
RcHm_v2.0_Chr4g0438671 Rosa chinensis
RcHm_v2.0_Chr5g0009141 Rosa chinensis
RcHm_v2.0_Chr5g0068321 Rosa chinensis
Rhsim07G0038700 Rhododendron simsii
Rhsim10G0044200 Rhododendron simsii
Sabra04G0030500 Salix brachista
Sabra04G0090200 Salix brachista
Sabra08G0149000 Salix brachista
Sabra09G0029400 Salix brachista
Sabra10G0121900 Salix brachista
SalBow1G3567 Salvia bowleyana
SalBow2G1065 Salvia bowleyana
SalBow2G1396 Salvia bowleyana
SalBow2G2210 Salvia bowleyana
SalBow2G3285 Salvia bowleyana
SalBow2G3308 Salvia bowleyana
SalBow8G0941 Salvia bowleyana
SalBow8G1615 Salvia bowleyana
SalBow8G2629 Salvia bowleyana
Sc11g0002350 Simmondsia chinensis
Sc21g0006170 Simmondsia chinensis
Sed0003050 Sechium edule
Sed0012280 Sechium edule
Sed0027142 Sechium edule
Sed0027676 Sechium edule
SEGI_05948 Sequoiadendron giganteum
SEGI_07709 Sequoiadendron giganteum
SEGI_10218 Sequoiadendron giganteum
SEGI_23106 Sequoiadendron giganteum
SEGI_29058 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32923 Striga asiatica
SGA_v2.0_scaffold16G07768 Striga asiatica
SGA_v2.0_scaffold4G02404 Striga asiatica
SMO012G0009 Selaginella moellendorffii
SMO137G0164 Selaginella moellendorffii
SMO364G0408 Selaginella moellendorffii
Solyc02g077680.4 Solanum lycopersicum
Solyc03g065340.3 Solanum lycopersicum
Solyc05g012510.3 Solanum lycopersicum
Solyc09g031970.3 Solanum lycopersicum
Sopen02g022580 Solanum pennellii
Sopen03g018230 Solanum pennellii
Sopen05g007330 Solanum pennellii
Sopen09g015910 Solanum pennellii
Sp2g17920 Schrenkiella parvula
Sp5g14750 Schrenkiella parvula
TAR627G0562 Trochodendron aralioides
TAR629G3258 Trochodendron aralioides
TAR633G0830 Trochodendron aralioides
THA.LOC104799406 Tarenaya hassleriana
THA.LOC104805507 Tarenaya hassleriana
Thecc.02G334500 Theobroma cacao
Thecc.02G334600 Theobroma cacao
Thecc.04G092100 Theobroma cacao
Thecc.06G181200 Theobroma cacao
Thecc.09G307100 Theobroma cacao
Thhalv10003599m.g Eutrema salsugineum
Thhalv10010122m.g Eutrema salsugineum
TPR.G10006 Trifolium pratense
TPR.G11755 Trifolium pratense
TPR.G182 Trifolium pratense
TPR.G30106 Trifolium pratense
TPR.G5021 Trifolium pratense
TWI31G1416 Tripterygium wilfordii
TWI32G0185 Tripterygium wilfordii
unitig_0.g441 Utricularia gibba
unitig_578.g16591 Utricularia gibba
unitig_85.g27150 Utricularia gibba
vmacro02996 Vaccinium macrocarpon
vmacro05656 Vaccinium macrocarpon
VMungo0251G0026 Vigna mungo
VMungo0464G0080 Vigna mungo
VMungo0464G0692 Vigna mungo
VMungo0464G1321 Vigna mungo
VMungo0540G1392 Vigna mungo
VMungo0540G2313 Vigna mungo
Zm00001eb057840 Zea mays
Zm00001eb147780 Zea mays

User provided reference genes

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