Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23840 Brassica napus
A07p10640 Brassica napus
A07p26480 Brassica napus
A08p25070 Brassica napus
A09p36870 Brassica napus
A10p31870 Brassica napus
Aa31LG1G22290 Aethionema arabicum
Aa31LG4G1160 Aethionema arabicum
Aa31LG4G320 Aethionema arabicum
Aa31LG8G12240 Aethionema arabicum
Aa31LG8G12250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1679 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5256 Anthoceros agrestis
Actinidia01738 Actinidia chinensis
Actinidia08794 Actinidia chinensis
Actinidia15755 Actinidia chinensis
Actinidia15978 Actinidia chinensis
Actinidia26373 Actinidia chinensis
Actinidia38725 Actinidia chinensis
Actinidia40494 Actinidia chinensis
Ah.01g006580 Amaranthus hybridus
Ah.09g224950 Amaranthus hybridus
AL2G41500 Arabidopsis lyrata
AL6G11770 Arabidopsis lyrata
AL7G43590 Arabidopsis lyrata
Aqoxy2G01408 Aquilegia oxysepala
Aqoxy3G00776 Aquilegia oxysepala
Aqoxy4G00349 Aquilegia oxysepala
Aqoxy4G00350 Aquilegia oxysepala
Aqoxy4G02971 Aquilegia oxysepala
Aqoxy5G01818 Aquilegia oxysepala
Aqoxy7G03641 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0AR657 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1K9E55 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7YRF18 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AE7RJF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F7S1IB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NKR70F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QMVE3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TX6A6S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VD9BGC Arachis hypogaea
AT1G80040 Arabidopsis thaliana
AT5G02510 Arabidopsis thaliana
AT5G32440 Arabidopsis thaliana
ATR0789G060 Amborella trichopoda
ATR1134G022 Amborella trichopoda
ATR1134G060 Amborella trichopoda
ATR1134G119 Amborella trichopoda
Atru.chr1.2903 Acer truncatum
Atru.chr7.1945 Acer truncatum
Atru.chr8.1938 Acer truncatum
AUR62011172 Chenopodium quinoa
AUR62011511 Chenopodium quinoa
AUR62013312 Chenopodium quinoa
AUR62016330 Chenopodium quinoa
BcaB01g00934 Brassica carinata
BcaB02g07298 Brassica carinata
BcaB03g12160 Brassica carinata
BcaB03g13882 Brassica carinata
BcaB04g18144 Brassica carinata
BcaB05g25299 Brassica carinata
BcaB07g32542 Brassica carinata
BcaC01g00109 Brassica carinata
BcaC03g16008 Brassica carinata
BcaC04g20845 Brassica carinata
BcaC05g26972 Brassica carinata
BcaC05g28222 Brassica carinata
BcaC06g35434 Brassica carinata
BcaC07g42695 Brassica carinata
BcaC08g45287 Brassica carinata
BcaC08g47567 Brassica carinata
BolC2t09778H Brassica oleracea
BolC3t19843H Brassica oleracea
BolC3t20377H Brassica oleracea
BolC5t31552H Brassica oleracea
BolC5t33028H Brassica oleracea
BolC6t36961H Brassica oleracea
BolC6t38056H Brassica oleracea
BolC7t42117H Brassica oleracea
BolC9t56710H Brassica oleracea
BraA02t07377Z Brassica rapa
BraA07t28857Z Brassica rapa
BraA07t30291Z Brassica rapa
BraA08t34462Z Brassica rapa
BraA09t39205Z Brassica rapa
C02p37630 Brassica napus
C03p75910 Brassica napus
C03p81110 Brassica napus
C04p32360 Brassica napus
C05p28290 Brassica napus
C05p42980 Brassica napus
C06p28890 Brassica napus
C07p16230 Brassica napus
C09p38530 Brassica napus
CAN.G1503.10 Capsicum annuum
CAN.G407.76 Capsicum annuum
CAN.G47.23 Capsicum annuum
CAN.G870.2 Capsicum annuum
CANSAT11G0449 Cannabis sativa
CANSAT56G2963 Cannabis sativa
CARHR074440 Cardamine hirsuta
CARHR210850 Cardamine hirsuta
CARHR217130 Cardamine hirsuta
Carub.0002s2748 Capsella rubella
Carub.0006s0131 Capsella rubella
Carub.0007s3051 Capsella rubella
Ca_12525_v3 Cicer arietinum L.
Ca_30880_v3 Cicer arietinum L.
CBR_g70719 Chara braunii
Cc04_g04470 Coffea canephora
Cc06_g08120 Coffea canephora
Cc10_g12470 Coffea canephora
CDE02G4691 Ceratophyllum demersum
CDE03G0500 Ceratophyllum demersum
CDE04G0764 Ceratophyllum demersum
CDE04G3303 Ceratophyllum demersum
CDE04G3621 Ceratophyllum demersum
CDE07G1561 Ceratophyllum demersum
Cfa003419 Carpinus fangiana
Cfa021087 Carpinus fangiana
Ciclev10009395m.g Citrus clementina
Ciclev10012475m.g Citrus clementina
Ciclev10026298m.g Citrus clementina
CiPaw.01G248900 Carya illinoinensis
CiPaw.02G157700 Carya illinoinensis
CiPaw.03G247900 Carya illinoinensis
CiPaw.04G174600 Carya illinoinensis
CiPaw.09G190500 Carya illinoinensis
ClCG04G008320 Citrullus lanatus
ClCG07G012180 Citrullus lanatus
ClCG07G012420 Citrullus lanatus
ClCG11G003300 Citrullus lanatus
COL.COLO4_11931 Corchorus olitorius
COL.COLO4_25935 Corchorus olitorius
COL.COLO4_25940 Corchorus olitorius
COL.COLO4_35145 Corchorus olitorius
Cpa.g.c42519 Carica papaya
Cpa.g.sc1915.1 Carica papaya
Cpa.g.sc260.4 Carica papaya
Cpa.g.sc46.37 Carica papaya
Cpa.g.sc67.45 Carica papaya
Cre11.g480000 Chlamydomonas reinhardtii
CsaV3_2G003120 Cucumis sativus L.
CsaV3_4G001980 Cucumis sativus L.
CsaV3_4G024820 Cucumis sativus L.
CSS0043632 Camellia sinensis var. sinensis
CSS0048410 Camellia sinensis var. sinensis
DCAR_009321 Daucus carota
DCAR_016271 Daucus carota
DCAR_020885 Daucus carota
DCAR_021350 Daucus carota
Dinv30614 Davidia involucrata
Dinv36483 Davidia involucrata
Dinv38127 Davidia involucrata
Dinv41479 Davidia involucrata
Duzib093G0458 Durio zibethinus
Duzib106G1392 Durio zibethinus
Duzib128G1890 Durio zibethinus
Duzib150G0756 Durio zibethinus
Duzib160G0273 Durio zibethinus
Duzib168G0489 Durio zibethinus
Duzib168G1305 Durio zibethinus
Duzib187G0967 Durio zibethinus
Duzib235G1279 Durio zibethinus
ECA232G2693 Erigeron canadensis
ECA234G4832 Erigeron canadensis
ECA240G0680 Erigeron canadensis
EL10Ac8g18713 Beta vulgaris
EL10Ac9g21878 Beta vulgaris
Eucgr.C04262 Eucalyptus grandis
Eucgr.F03883 Eucalyptus grandis
FAN02G1585 Fragaria x ananassa
FAN02G3023 Fragaria x ananassa
FAN04G2292 Fragaria x ananassa
FAN05G3367 Fragaria x ananassa
FAN05G5043 Fragaria x ananassa
FAN05G5447 Fragaria x ananassa
FAN08G1985 Fragaria x ananassa
FAN09G4546 Fragaria x ananassa
FAN11G1388 Fragaria x ananassa
FAN13G2500 Fragaria x ananassa
FAN14G0412 Fragaria x ananassa
FAN14G4348 Fragaria x ananassa
FAN18G1927 Fragaria x ananassa
FAN21G3641 Fragaria x ananassa
FAN23G3134 Fragaria x ananassa
FAN25G3582 Fragaria x ananassa
FAN26G0502 Fragaria x ananassa
FAN26G2973 Fragaria x ananassa
FAN28G0667 Fragaria x ananassa
FvH4_1g02660 Fragaria vesca
FvH4_3g41870 Fragaria vesca
FvH4_5g38860 Fragaria vesca
FvH4_6g20801 Fragaria vesca
FvH4_6g29540 Fragaria vesca
Glyma.07G029500 Glycine max
Glyma.08G213300 Glycine max
Glyma.13G159500 Glycine max
Glyma.13G366200 Glycine max
Glyma.15G007000 Glycine max
Glyma.17G112051 Glycine max
Gohir.A05G014500 Gossypium hirsutum
Gohir.A06G117100 Gossypium hirsutum
Gohir.A06G184700 Gossypium hirsutum
Gohir.A06G184900 Gossypium hirsutum
Gohir.A09G157500 Gossypium hirsutum
Gohir.A13G200500 Gossypium hirsutum
Gohir.D05G015600 Gossypium hirsutum
Gohir.D06G120400 Gossypium hirsutum
Gohir.D06G191700 Gossypium hirsutum
Gohir.D09G152800 Gossypium hirsutum
Gohir.D13G206100 Gossypium hirsutum
Gorai.006G174300 Gossypium raimondii
Gorai.009G015700 Gossypium raimondii
Gorai.010G140800 Gossypium raimondii
Gorai.010G224900 Gossypium raimondii
Gorai.013G234800 Gossypium raimondii
GSVIVG01015583001 Vitis vinifera
GSVIVG01017350001 Vitis vinifera
GSVIVG01034201001 Vitis vinifera
HanXRQChr02g0058601 Helianthus annuus
HanXRQChr03g0063221 Helianthus annuus
HanXRQChr10g0302841 Helianthus annuus
HanXRQChr12g0361571 Helianthus annuus
HanXRQChr15g0466081 Helianthus annuus
HanXRQChr15g0478281 Helianthus annuus
HanXRQChr15g0479041 Helianthus annuus
HanXRQChr17g0543251 Helianthus annuus
Haze_13064 Corylus avellana
Haze_16569 Corylus avellana
Haze_20759 Corylus avellana
Haze_25513 Corylus avellana
Haze_25514 Corylus avellana
Hma1.2p1_0242F.1_g100650 Hydrangea macrophylla
Hma1.2p1_0343F.1_g130980 Hydrangea macrophylla
Hma1.2p1_0497F.1_g166340 Hydrangea macrophylla
HPP92_001684 Vanilla planifolia
HPP92_003384 Vanilla planifolia
HPP92_003390 Vanilla planifolia
HPP92_003849 Vanilla planifolia
Hund09279 Selenicereus undatus
Hund09281 Selenicereus undatus
Hund26543 Selenicereus undatus
Lalb_Chr01g0012331 Lupinus albus
Lalb_Chr04g0262361 Lupinus albus
Lalb_Chr12g0198141 Lupinus albus
Lalb_Chr12g0198151 Lupinus albus
Lalb_Chr14g0373861 Lupinus albus
Lalb_Chr25g0279261 Lupinus albus
Lj3g0012489 Lotus japonicus
Lj3g0018784 Lotus japonicus
Lj4g0018642 Lotus japonicus
Lj5A74G66 Lonicera japonica
Lj7A428G30 Lonicera japonica
Lj7A428G31 Lonicera japonica
Lsat_1_v5_gn_4_87681 Lactuca sativa
Lsat_1_v5_gn_5_131461 Lactuca sativa
Lsat_1_v5_gn_7_44280 Lactuca sativa
Manes.06G047900 Manihot esculenta
Manes.08G111520 Manihot esculenta
Manes.11G057900 Manihot esculenta
Manes.14G115900 Manihot esculenta
Mapoly0176s0004 Marchantia polymorpha
MBI02_g22114_MAGBIO Magnolia biondii
MBI15_g14848_MAGBIO Magnolia biondii
MCO12G433 Micromonas commoda
MD02G1026900 Malus domestica
MD10G1231400 Malus domestica
MD15G1168400 Malus domestica
MD17G1213400 Malus domestica
Medtr2g104010 Medicago truncatula
Medtr4g010100 Medicago truncatula
Medtr8g086400 Medicago truncatula
MELO3C003116.2 Cucumis melo
MELO3C004464.2 Cucumis melo
MELO3C017838.2 Cucumis melo
Migut.D01082 Erythranthe guttata
Migut.I00755 Erythranthe guttata
Migut.K00429 Erythranthe guttata
MSTRG.10664 Avicennia marina
MSTRG.11147 Avicennia marina
MSTRG.22752 Avicennia marina
MSTRG.26424 Avicennia marina
MSTRG.4703 Avicennia marina
Nitab4.5_0000373g0070 Nicotiana tabacum
Nitab4.5_0001349g0020 Nicotiana tabacum
Nitab4.5_0003157g0030 Nicotiana tabacum
Nitab4.5_0003463g0050 Nicotiana tabacum
Nitab4.5_0004513g0020 Nicotiana tabacum
Nitab4.5_0005658g0010 Nicotiana tabacum
Nitab4.5_0006769g0050 Nicotiana tabacum
Nitab4.5_0008560g0050 Nicotiana tabacum
Nitab4.5_0013167g0010 Nicotiana tabacum
Nitab4.5_0013265g0010 Nicotiana tabacum
Nn2g10414 Nelumbo nucifera
Nn2g12102 Nelumbo nucifera
Nn2g12805 Nelumbo nucifera
Nn8g39531 Nelumbo nucifera
Oeu027843.2 Olea europaea
Oeu032451.1 Olea europaea
Oeu056069.1 Olea europaea
Oeu056943.1 Olea europaea
Oeu060113.1 Olea europaea
Oeu060114.1 Olea europaea
Os02g0184500 Oryza sativa ssp. japonica
Os06g0642650 Oryza sativa ssp. japonica
Os06g0642900 Oryza sativa ssp. japonica
Os08g0313600 Oryza sativa ssp. japonica
Os09g0119100 Oryza sativa ssp. japonica
Peaxi162Scf00034g00147 Petunia axillaris
Peaxi162Scf00088g01510 Petunia axillaris
Peaxi162Scf00207g00632 Petunia axillaris
Peaxi162Scf00313g00712 Petunia axillaris
Peaxi162Scf00332g00633 Petunia axillaris
PGR102G2558 Punica granatum
PGR142G3451 Punica granatum
PGSC0003DMG400000623 Solanum tuberosum
PGSC0003DMG400002912 Solanum tuberosum
PGSC0003DMG400028628 Solanum tuberosum
PGSC0003DMG400030911 Solanum tuberosum
PGSC0003DMG402028532 Solanum tuberosum
Phvul.003G168100 Phaseolus vulgaris
Phvul.005G178700 Phaseolus vulgaris
Phvul.010G156600 Phaseolus vulgaris
Potri.005G121100 Populus trichocarpa
Potri.006G066000 Populus trichocarpa
Potri.018G127200 Populus trichocarpa
Pp3c11_12540 Physcomitrium patens
Pp3c5_15270 Physcomitrium patens
Pp3c6_16310 Physcomitrium patens
PRCOL_00000405 Prasinoderma coloniale
Prupe.3G088700 Prunus persica
Prupe.7G248100 Prunus persica
Psat5g303560 Pisum sativum
Psat7g257240 Pisum sativum
PSO210G1165 Papaver somniferum
PSO210G5596 Papaver somniferum
PSO210G6940 Papaver somniferum
PSO339G1821 Papaver somniferum
PSO541G1519 Papaver somniferum
PSO648G0099 Papaver somniferum
PSO675G4298 Papaver somniferum
QL02p089749 Quercus lobata
QL03p020329 Quercus lobata
QL05p030773 Quercus lobata
QL05p030780 Quercus lobata
QL07p031139 Quercus lobata
QL07p035288 Quercus lobata
QL07p035305 Quercus lobata
QL07p035328 Quercus lobata
QL07p035343 Quercus lobata
QL07p035391 Quercus lobata
QL07p035413 Quercus lobata
QL07p047863 Quercus lobata
RcHm_v2.0_Chr2g0087691 Rosa chinensis
RcHm_v2.0_Chr2g0135081 Rosa chinensis
RcHm_v2.0_Chr5g0009411 Rosa chinensis
RcHm_v2.0_Chr5g0074891 Rosa chinensis
RcHm_v2.0_Chr5g0075061 Rosa chinensis
Rhsim03G0251000 Rhododendron simsii
Rhsim08G0212300 Rhododendron simsii
Rhsim12G0190800 Rhododendron simsii
Sabra05G0099800 Salix brachista
Sabra06G0048700 Salix brachista
Sabra18G0107900 Salix brachista
SalBow2G0910 Salvia bowleyana
SalBow6G0624 Salvia bowleyana
SalBow6G3520 Salvia bowleyana
SalBow6G6042 Salvia bowleyana
Sc10g0006010 Simmondsia chinensis
Sc18g0000390 Simmondsia chinensis
Sed0006941 Sechium edule
Sed0020886 Sechium edule
Sed0021041 Sechium edule
Sed0024549 Sechium edule
Sed0025644 Sechium edule
Sed0028037 Sechium edule
SEGI_01984 Sequoiadendron giganteum
SEGI_06139 Sequoiadendron giganteum
SGA_v2.0_scaffold109G31061 Striga asiatica
SGA_v2.0_scaffold307G48039 Striga asiatica
SGA_v2.0_scaffold5G02706 Striga asiatica
SHI29283 Sapria himalayana
SMO356G0744 Selaginella moellendorffii
Solyc03g116780.3 Solanum lycopersicum
Solyc06g068180.3 Solanum lycopersicum
Solyc06g068190.2 Solanum lycopersicum
Solyc07g007960.3 Solanum lycopersicum
Solyc12g009620.2 Solanum lycopersicum
Solyc12g042750.2 Solanum lycopersicum
Sopen03g035700 Solanum pennellii
Sopen04g011590 Solanum pennellii
Sopen06g013960 Solanum pennellii
Sopen06g025460 Solanum pennellii
Sopen07g003840 Solanum pennellii
Sopen12g004610 Solanum pennellii
Sopen12g021930 Solanum pennellii
Sp1g25410 Schrenkiella parvula
Sp5g35810 Schrenkiella parvula
Sp6g40000 Schrenkiella parvula
TAR623G0751 Trochodendron aralioides
TAR625G1306 Trochodendron aralioides
TAR626G0058 Trochodendron aralioides
TAR636G3024 Trochodendron aralioides
TAR636G3292 Trochodendron aralioides
THA.LOC104800441 Tarenaya hassleriana
THA.LOC104808967 Tarenaya hassleriana
THA.LOC104823253 Tarenaya hassleriana
THA.LOC104826550 Tarenaya hassleriana
Thecc.04G276500 Theobroma cacao
Thecc.04G276600 Theobroma cacao
Thecc.06G029000 Theobroma cacao
Thecc.09G131400 Theobroma cacao
Thhalv10003459m.g Eutrema salsugineum
Thhalv10019034m.g Eutrema salsugineum
TPR.G37220 Trifolium pratense
TPR.G38675 Trifolium pratense
TWI09G0238 Tripterygium wilfordii
TWI09G1506 Tripterygium wilfordii
TWI12G0808 Tripterygium wilfordii
TWI34G1608 Tripterygium wilfordii
TWI53G0454 Tripterygium wilfordii
TWI53G1616 Tripterygium wilfordii
TWI63G0119 Tripterygium wilfordii
TWI75G0429 Tripterygium wilfordii
unitig_52.g17460 Utricularia gibba
vmacro06153 Vaccinium macrocarpon
vmacro16890 Vaccinium macrocarpon
vmacro19005 Vaccinium macrocarpon
VMungo0331G0897 Vigna mungo
VMungo1080G0134 Vigna mungo
VMungo1215G3452 Vigna mungo
Zm00001eb234410 Zea mays
Zm00001eb275390 Zea mays
Zm00001eb275400 Zea mays
Zm00001eb387140 Zea mays

User provided reference genes

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