Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01200 Brassica napus
A03p05200 Brassica napus
A03p13210 Brassica napus
A07p01060 Brassica napus
A07p01070 Brassica napus
A09p59200 Brassica napus
A10p14090 Brassica napus
Aa31LG3G12700 Aethionema arabicum
Aa31LG3G15410 Aethionema arabicum
Aa31LG8G16620 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.693 Anthoceros agrestis
Actinidia14707 Actinidia chinensis
Actinidia18192 Actinidia chinensis
Actinidia30306 Actinidia chinensis
Actinidia30930 Actinidia chinensis
AL3G48610 Arabidopsis lyrata
AL6G22540 Arabidopsis lyrata
AL8G32590 Arabidopsis lyrata
Aqoxy5G00481 Aquilegia oxysepala
Aqoxy7G01261 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4V3JGL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7V2LAA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8JRJ6X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DG0J8D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E30Z61 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EUK7DY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IHVZ87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MH3CCF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P125GD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P456AJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UMIX20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.US000D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WM01PM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0CD3J Arachis hypogaea
AT2G19620 Arabidopsis thaliana
AT5G11790 Arabidopsis thaliana
AT5G56750 Arabidopsis thaliana
ATR0737G053 Amborella trichopoda
ATR0789G025 Amborella trichopoda
Atru.chr2.776 Acer truncatum
Atru.chr7.1042 Acer truncatum
Atru.chr7.1547 Acer truncatum
AUR62009163 Chenopodium quinoa
AUR62022059 Chenopodium quinoa
AUR62027445 Chenopodium quinoa
AUR62031256 Chenopodium quinoa
AUR62043932 Chenopodium quinoa
BcaB01g04418 Brassica carinata
BcaB01g05453 Brassica carinata
BcaB08g34877 Brassica carinata
BcaB08g36063 Brassica carinata
BcaC01g06445 Brassica carinata
BcaC03g13391 Brassica carinata
BcaC04g20056 Brassica carinata
BcaC07g41243 Brassica carinata
BcaNung02653 Brassica carinata
BolC2t06486H Brassica oleracea
BolC3t13986H Brassica oleracea
BolC3t19465H Brassica oleracea
BolC4t22521H Brassica oleracea
BolC8t51810H Brassica oleracea
BolC9t57682H Brassica oleracea
BolC9t58595H Brassica oleracea
BraA02t05099Z Brassica rapa
BraA03t09859Z Brassica rapa
BraA03t10633Z Brassica rapa
BraA07t27907Z Brassica rapa
BraA09t41304Z Brassica rapa
BraA10t43500Z Brassica rapa
C02p05370 Brassica napus
C03p06000 Brassica napus
C03p15480 Brassica napus
C03p71760 Brassica napus
C04p09130 Brassica napus
C08p42490 Brassica napus
C09p48320 Brassica napus
C09p57260 Brassica napus
CAN.G174.5 Capsicum annuum
CAN.G218.1 Capsicum annuum
CAN.G57.30 Capsicum annuum
CAN.G6.21 Capsicum annuum
CANSAT25G3104 Cannabis sativa
CANSAT54G0033 Cannabis sativa
CANSAT56G1724 Cannabis sativa
CANSAT56G3733 Cannabis sativa
CARHR110060 Cardamine hirsuta
CARHR201400 Cardamine hirsuta
CARHR270500 Cardamine hirsuta
Carub.0003s3391 Capsella rubella
Carub.0006s1032 Capsella rubella
Carub.0008s1723 Capsella rubella
Ca_10053_v3 Cicer arietinum L.
Ca_13175_v3 Cicer arietinum L.
Ca_17394_v3 Cicer arietinum L.
Ca_17400_v3 Cicer arietinum L.
Ca_30669_v3 Cicer arietinum L.
Cc02_g31780 Coffea canephora
Cc06_g11120 Coffea canephora
Cc08_g10430 Coffea canephora
CDE05G0859 Ceratophyllum demersum
CDE05G2644 Ceratophyllum demersum
CDE10G0508 Ceratophyllum demersum
CDE10G1348 Ceratophyllum demersum
Cfa006456 Carpinus fangiana
Cfa017945 Carpinus fangiana
Ciclev10001660m.g Citrus clementina
Ciclev10008801m.g Citrus clementina
Ciclev10008808m.g Citrus clementina
CiPaw.03G218700 Carya illinoinensis
CiPaw.04G151900 Carya illinoinensis
CiPaw.07G064600 Carya illinoinensis
CiPaw.08G125200 Carya illinoinensis
CiPaw.15G040200 Carya illinoinensis
CiPaw.16G029200 Carya illinoinensis
ClCG03G015780 Citrullus lanatus
ClCG08G016960 Citrullus lanatus
COL.COLO4_15290 Corchorus olitorius
COL.COLO4_15292 Corchorus olitorius
COL.COLO4_18227 Corchorus olitorius
COL.COLO4_21043 Corchorus olitorius
Cpa.g.sc264.9 Carica papaya
Cpa.g.sc7.245 Carica papaya
Cpa.g.sc78.10 Carica papaya
CsaV3_1G040230 Cucumis sativus L.
CsaV3_2G025640 Cucumis sativus L.
CsaV3_UNG064490 Cucumis sativus L.
CSS0004015 Camellia sinensis var. sinensis
CSS0015463 Camellia sinensis var. sinensis
CSS0025067 Camellia sinensis var. sinensis
CSS0026286 Camellia sinensis var. sinensis
CSS0027485 Camellia sinensis var. sinensis
CSS0027745 Camellia sinensis var. sinensis
CSS0029004 Camellia sinensis var. sinensis
CSS0041902 Camellia sinensis var. sinensis
CSS0047583 Camellia sinensis var. sinensis
DCAR_007724 Daucus carota
DCAR_011996 Daucus carota
DCAR_011997 Daucus carota
DCAR_028603 Daucus carota
Dinv08529 Davidia involucrata
Dinv11535 Davidia involucrata
Dinv23431 Davidia involucrata
Dinv36746 Davidia involucrata
Dinv42296 Davidia involucrata
Duzib128G0519 Durio zibethinus
Duzib150G1521 Durio zibethinus
Duzib168G2028 Durio zibethinus
Duzib168G2351 Durio zibethinus
Duzib187G1872 Durio zibethinus
ECA233G1826 Erigeron canadensis
ECA234G3024 Erigeron canadensis
ECA240G2348 Erigeron canadensis
ECA246G1653 Erigeron canadensis
EL10Ac2g03911 Beta vulgaris
EL10Ac8g19277 Beta vulgaris
Eucgr.B01699 Eucalyptus grandis
Eucgr.C00915 Eucalyptus grandis
Eucgr.C03023 Eucalyptus grandis
Eucgr.C03663 Eucalyptus grandis
FAN02G4495 Fragaria x ananassa
FAN05G1544 Fragaria x ananassa
FAN05G3758 Fragaria x ananassa
FAN05G5694 Fragaria x ananassa
FAN09G2935 Fragaria x ananassa
FAN14G1993 Fragaria x ananassa
FAN14G2286 Fragaria x ananassa
FAN15G1704 Fragaria x ananassa
FAN19G0923 Fragaria x ananassa
FAN20G0203 Fragaria x ananassa
FAN23G1943 Fragaria x ananassa
FAN24G0521 Fragaria x ananassa
FAN26G1018 Fragaria x ananassa
FAN26G3029 Fragaria x ananassa
FAN27G0282 Fragaria x ananassa
FAN28G0274 Fragaria x ananassa
FvH4_1g07070 Fragaria vesca
FvH4_1g07090 Fragaria vesca
FvH4_2g32080 Fragaria vesca
FvH4_6g03390 Fragaria vesca
FvH4_6g03401 Fragaria vesca
Glyma.01G003500 Glycine max
Glyma.04G050700 Glycine max
Glyma.05G222800 Glycine max
Glyma.06G051500 Glycine max
Glyma.07G128400 Glycine max
Glyma.08G029700 Glycine max
Glyma.10G161000 Glycine max
Glyma.14G093600 Glycine max
Glyma.17G230100 Glycine max
Glyma.18G164133 Glycine max
Glyma.20G223800 Glycine max
Gohir.A05G043000 Gossypium hirsutum
Gohir.A06G071200 Gossypium hirsutum
Gohir.A06G088900 Gossypium hirsutum
Gohir.A07G010300 Gossypium hirsutum
Gohir.A07G022120 Gossypium hirsutum
Gohir.A11G254800 Gossypium hirsutum
Gohir.D05G044700 Gossypium hirsutum
Gohir.D06G069900 Gossypium hirsutum
Gohir.D06G088100 Gossypium hirsutum
Gohir.D07G010600 Gossypium hirsutum
Gohir.D07G022600 Gossypium hirsutum
Gohir.D11G264500 Gossypium hirsutum
Gorai.001G011000 Gossypium raimondii
Gorai.001G023200 Gossypium raimondii
Gorai.007G284500 Gossypium raimondii
Gorai.009G045800 Gossypium raimondii
Gorai.010G081500 Gossypium raimondii
Gorai.010G101700 Gossypium raimondii
GSVIVG01015232001 Vitis vinifera
GSVIVG01021838001 Vitis vinifera
GSVIVG01035359001 Vitis vinifera
HanXRQChr01g0004191 Helianthus annuus
HanXRQChr03g0060551 Helianthus annuus
HanXRQChr03g0083911 Helianthus annuus
HanXRQChr03g0090681 Helianthus annuus
HanXRQChr04g0110141 Helianthus annuus
HanXRQChr04g0113601 Helianthus annuus
HanXRQChr05g0133821 Helianthus annuus
HanXRQChr06g0178641 Helianthus annuus
HanXRQChr07g0189181 Helianthus annuus
HanXRQChr07g0197711 Helianthus annuus
HanXRQChr08g0226591 Helianthus annuus
HanXRQChr08g0226831 Helianthus annuus
HanXRQChr09g0263301 Helianthus annuus
HanXRQChr10g0319141 Helianthus annuus
HanXRQChr11g0343651 Helianthus annuus
HanXRQChr12g0355381 Helianthus annuus
HanXRQChr12g0358411 Helianthus annuus
HanXRQChr13g0392481 Helianthus annuus
HanXRQChr16g0516471 Helianthus annuus
HanXRQChr17g0538461 Helianthus annuus
Haze_04334 Corylus avellana
Haze_18201 Corylus avellana
Haze_25887 Corylus avellana
Hma1.2p1_0450F.1_g155570 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162630 Hydrangea macrophylla
Hma1.2p1_0798F.1_g219620 Hydrangea macrophylla
HPP92_005248 Vanilla planifolia
HPP92_008791 Vanilla planifolia
HPP92_023229 Vanilla planifolia
Hund03346 Selenicereus undatus
Hund19467 Selenicereus undatus
Hund25847 Selenicereus undatus
Lalb_Chr02g0148701 Lupinus albus
Lalb_Chr05g0223581 Lupinus albus
Lalb_Chr11g0063101 Lupinus albus
Lalb_Chr14g0375321 Lupinus albus
Lalb_Chr22g0349751 Lupinus albus
Lalb_Chr22g0356031 Lupinus albus
Lalb_Chr24g0393861 Lupinus albus
Lj1g0003770 Lotus japonicus
Lj2g0026976 Lotus japonicus
Lj4C310T0 Lonicera japonica
Lj4g0012866 Lotus japonicus
Lj5g0005756 Lotus japonicus
Lj5g0026061 Lotus japonicus
Lj7A487T34 Lonicera japonica
Lj7C278G0 Lonicera japonica
Lj7C672T9 Lonicera japonica
Lsat_1_v5_gn_3_24280 Lactuca sativa
Lsat_1_v5_gn_5_145821 Lactuca sativa
Lsat_1_v5_gn_6_13280 Lactuca sativa
Lsat_1_v5_gn_7_37821 Lactuca sativa
Lsat_1_v5_gn_9_73700 Lactuca sativa
Manes.03G047100 Manihot esculenta
Manes.08G128600 Manihot esculenta
Manes.09G155200 Manihot esculenta
Manes.16G079200 Manihot esculenta
Manes.16G103800 Manihot esculenta
Mapoly0036s0038 Marchantia polymorpha
MBI01_g02265_MAGBIO Magnolia biondii
MBI01_g13079_MAGBIO Magnolia biondii
MBI04_g11709_MAGBIO Magnolia biondii
MD02G1075000 Malus domestica
MD04G1221300 Malus domestica
MD08G1043700 Malus domestica
MD15G1061200 Malus domestica
MD15G1198700 Malus domestica
MD15G1199000 Malus domestica
MD15G1204100 Malus domestica
Medtr1g016510 Medicago truncatula
Medtr1g081240 Medicago truncatula
Medtr8g101710 Medicago truncatula
MELO3C010760.2 Cucumis melo
MELO3C015450.2 Cucumis melo
Migut.A00143 Erythranthe guttata
Migut.J00588 Erythranthe guttata
Migut.K00585 Erythranthe guttata
MSTRG.11665 Avicennia marina
MSTRG.19529 Avicennia marina
MSTRG.25944 Avicennia marina
Nitab4.5_0000012g0310 Nicotiana tabacum
Nitab4.5_0000713g0080 Nicotiana tabacum
Nitab4.5_0000938g0060 Nicotiana tabacum
Nitab4.5_0001584g0050 Nicotiana tabacum
Nitab4.5_0003752g0030 Nicotiana tabacum
Nitab4.5_0004160g0030 Nicotiana tabacum
Nn1g02280 Nelumbo nucifera
Nn2g10361 Nelumbo nucifera
Nn4g26299 Nelumbo nucifera
Nn6g35201 Nelumbo nucifera
Nn6g35425 Nelumbo nucifera
Oeu000325.1 Olea europaea
Oeu018431.1 Olea europaea
Oeu018650.1 Olea europaea
Oeu036342.1 Olea europaea
Oeu047118.1 Olea europaea
Os01g0192600 Oryza sativa ssp. japonica
Os02g0224800 Oryza sativa ssp. japonica
Os05g0196200 Oryza sativa ssp. japonica
Os06g0563000 Oryza sativa ssp. japonica
Peaxi162Scf00136g00057 Petunia axillaris
Peaxi162Scf00522g00115 Petunia axillaris
PGR044G0918 Punica granatum
PGR142G3901 Punica granatum
PGSC0003DMG400002204 Solanum tuberosum
PGSC0003DMG400003248 Solanum tuberosum
PGSC0003DMG400020956 Solanum tuberosum
Phvul.001G034100 Phaseolus vulgaris
Phvul.002G304800 Phaseolus vulgaris
Phvul.004G171900 Phaseolus vulgaris
Phvul.007G186500 Phaseolus vulgaris
Phvul.009G077000 Phaseolus vulgaris
Potri.006G230800 Populus trichocarpa
Potri.013G038100 Populus trichocarpa
Potri.018G054900 Populus trichocarpa
Potri.018G067700 Populus trichocarpa
Pp3c15_6550 Physcomitrium patens
Pp3c20_3020 Physcomitrium patens
Pp3c23_11160 Physcomitrium patens
Pp3c23_21700 Physcomitrium patens
Pp3c24_6200 Physcomitrium patens
Pp3c8_24760 Physcomitrium patens
Pp3c9_6540 Physcomitrium patens
Prupe.1G413900 Prunus persica
Prupe.6G340500 Prunus persica
Prupe.7G213100 Prunus persica
Psat0s1147g0120 Pisum sativum
Psat6g019800 Pisum sativum
Psat6g146800 Pisum sativum
Psat7g019680 Pisum sativum
PSO063G4617 Papaver somniferum
PSO210G1346 Papaver somniferum
PSO210G6656 Papaver somniferum
PSO832G2423 Papaver somniferum
PSO832G4265 Papaver somniferum
QL02p001394 Quercus lobata
QL02p063068 Quercus lobata
QL02p063099 Quercus lobata
QL03p024792 Quercus lobata
RcHm_v2.0_Chr1g0342811 Rosa chinensis
RcHm_v2.0_Chr2g0092981 Rosa chinensis
RcHm_v2.0_Chr2g0101961 Rosa chinensis
RcHm_v2.0_Chr3g0451871 Rosa chinensis
RcHm_v2.0_Chr3g0451891 Rosa chinensis
RcHm_v2.0_Chr5g0023631 Rosa chinensis
RcHm_v2.0_Chr6g0310661 Rosa chinensis
Rhsim03G0234100 Rhododendron simsii
Rhsim07G0142900 Rhododendron simsii
Rhsim11G0044900 Rhododendron simsii
Sabra06G0179000 Salix brachista
Sabra13G0036100 Salix brachista
Sabra18G0049500 Salix brachista
Sabra18G0059600 Salix brachista
SalBow1G1732 Salvia bowleyana
SalBow1G2400 Salvia bowleyana
SalBow4G1259 Salvia bowleyana
SalBow6G4535 Salvia bowleyana
Sc08g0008320 Simmondsia chinensis
Sc09g0009740 Simmondsia chinensis
Sc18g0001880 Simmondsia chinensis
Sed0002101 Sechium edule
Sed0009582 Sechium edule
Sed0015605 Sechium edule
SEGI_38084 Sequoiadendron giganteum
SEGI_39419 Sequoiadendron giganteum
SGA_v2.0_scaffold163G38036 Striga asiatica
SGA_v2.0_scaffold169G38684 Striga asiatica
SGA_v2.0_scaffold375G50249 Striga asiatica
SGA_v2.0_scaffold62G21586 Striga asiatica
SMO351G0558 Selaginella moellendorffii
Solyc05g026360.4 Solanum lycopersicum
Solyc07g021700.3 Solanum lycopersicum
Solyc08g065430.3 Solanum lycopersicum
Sopen05g022670 Solanum pennellii
Sopen07g011560 Solanum pennellii
Sopen08g019040 Solanum pennellii
Sp3g32990 Schrenkiella parvula
Sp6g18500 Schrenkiella parvula
Sp6g31810 Schrenkiella parvula
TAR078G0002 Trochodendron aralioides
TAR362G1275 Trochodendron aralioides
TAR371G0361 Trochodendron aralioides
TAR624G1105 Trochodendron aralioides
TAR633G2107 Trochodendron aralioides
TAR636G0943 Trochodendron aralioides
THA.LOC104799171 Tarenaya hassleriana
THA.LOC104811247 Tarenaya hassleriana
THA.LOC104811740 Tarenaya hassleriana
THA.LOC104814613 Tarenaya hassleriana
THA.LOC104817750 Tarenaya hassleriana
Thecc.05G287900 Theobroma cacao
Thecc.09G052500 Theobroma cacao
Thecc.09G092700 Theobroma cacao
Thhalv10002029m.g Eutrema salsugineum
Thhalv10014006m.g Eutrema salsugineum
Thhalv10014007m.g Eutrema salsugineum
TPR.G13016 Trifolium pratense
TPR.G25487 Trifolium pratense
TPR.G30947 Trifolium pratense
TWI32G0017 Tripterygium wilfordii
TWI32G0983 Tripterygium wilfordii
TWI34G0331 Tripterygium wilfordii
TWI34G1477 Tripterygium wilfordii
TWI56G0185 Tripterygium wilfordii
unitig_0.g2562 Utricularia gibba
unitig_32.g11465 Utricularia gibba
unitig_748.g7519 Utricularia gibba
vmacro00151 Vaccinium macrocarpon
vmacro06278 Vaccinium macrocarpon
VMungo0251G0384 Vigna mungo
VMungo0464G1088 Vigna mungo
VMungo0647G1688 Vigna mungo
VMungo0720G1426 Vigna mungo
VMungo1309G0374 Vigna mungo
Zm00001eb036390 Zea mays
Zm00001eb106710 Zea mays
Zm00001eb121200 Zea mays
Zm00001eb136440 Zea mays
Zm00001eb164440 Zea mays
Zm00001eb205050 Zea mays
Zm00001eb239770 Zea mays
Zm00001eb242530 Zea mays
Zm00001eb284230 Zea mays
Zm00001eb337390 Zea mays
Zm00001eb384200 Zea mays

User provided reference genes

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