Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p08970 Brassica napus
A03p56570 Brassica napus
A06p10570 Brassica napus
A07p00910 Brassica napus
A09p12590 Brassica napus
Aa31LG1G540 Aethionema arabicum
Aa31LG3G610 Aethionema arabicum
Aa31LG8G16780 Aethionema arabicum
Actinidia14692 Actinidia chinensis
Actinidia17491 Actinidia chinensis
Actinidia17495 Actinidia chinensis
Actinidia18205 Actinidia chinensis
Actinidia25287 Actinidia chinensis
Actinidia29896 Actinidia chinensis
Actinidia32122 Actinidia chinensis
Actinidia39128 Actinidia chinensis
AL1G26450 Arabidopsis lyrata
AL1G26490 Arabidopsis lyrata
AL3G48410 Arabidopsis lyrata
AL7G26690 Arabidopsis lyrata
AL7G26700 Arabidopsis lyrata
AL8G32460 Arabidopsis lyrata
Aqoxy1G03101 Aquilegia oxysepala
Aqoxy3G01044 Aquilegia oxysepala
Aqoxy7G03949 Aquilegia oxysepala
Aqoxy7G03950 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.02PQYM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0Q2QZQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1V58TW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.25NTP7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.30QA0S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5B2J8N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60DFDF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6A9P1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6E02AJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.70JXP5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83RLU7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AJE8GW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B3KCKB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D13UR9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EJSS8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ELH53L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GBET2X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GV2JV8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H9PL4D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM3P0Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7EMJP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M1XV77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MU4VHD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MZ9SR0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NIQ00C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RWH90B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJ9S7P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TT4I2S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VVK2QW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VZ30EU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XEZQ7D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z1CJI9 Arachis hypogaea
AT1G14520 Arabidopsis thaliana
AT2G19800 Arabidopsis thaliana
AT4G26260 Arabidopsis thaliana
AT5G56640 Arabidopsis thaliana
ATR0705G085 Amborella trichopoda
ATR0705G213 Amborella trichopoda
Atru.chr1.3569 Acer truncatum
Atru.chr7.1511 Acer truncatum
AUR62021354 Chenopodium quinoa
AUR62022251 Chenopodium quinoa
AUR62031966 Chenopodium quinoa
AUR62033267 Chenopodium quinoa
BcaB02g06505 Brassica carinata
BcaB03g16771 Brassica carinata
BcaB05g22289 Brassica carinata
BcaC03g14209 Brassica carinata
BcaC04g22819 Brassica carinata
BcaC05g25360 Brassica carinata
BcaC06g32764 Brassica carinata
BcaC06g36623 Brassica carinata
BcaC07g38742 Brassica carinata
BolC2t07623H Brassica oleracea
BolC5t29990H Brassica oleracea
BolC7t40612H Brassica oleracea
BolC7t45966H Brassica oleracea
BolC8t49296H Brassica oleracea
BolC9t54397H Brassica oleracea
BraA02t05966Z Brassica rapa
BraA03t14727Z Brassica rapa
BraA06t24237Z Brassica rapa
BraA07t27891Z Brassica rapa
BraA09t36906Z Brassica rapa
C02p15070 Brassica napus
C05p12440 Brassica napus
C07p02070 Brassica napus
C07p54770 Brassica napus
C08p16760 Brassica napus
C09p14950 Brassica napus
CAN.G1241.1 Capsicum annuum
CAN.G143.23 Capsicum annuum
CAN.G635.38 Capsicum annuum
CAN.G706.29 Capsicum annuum
CANSAT56G0167 Cannabis sativa
CANSAT56G0388 Cannabis sativa
CANSAT56G2804 Cannabis sativa
CANSAT56G3340 Cannabis sativa
CANSAT78G1120 Cannabis sativa
CARHR015000 Cardamine hirsuta
CARHR110260 Cardamine hirsuta
CARHR117700 Cardamine hirsuta
CARHR233810 Cardamine hirsuta
CARHR270330 Cardamine hirsuta
Carub.0001s1428 Capsella rubella
Carub.0003s3408 Capsella rubella
Carub.0007s1468 Capsella rubella
Carub.0007s1469 Capsella rubella
Carub.0008s1712 Capsella rubella
Ca_17381_v3 Cicer arietinum L.
Ca_23282_v3 Cicer arietinum L.
Cc00_g28680 Coffea canephora
Cc00_g28870 Coffea canephora
Cc02_g09430 Coffea canephora
Cc04_g02360 Coffea canephora
Cc06_g10840 Coffea canephora
Cc11_g01980 Coffea canephora
CDE02G0338 Ceratophyllum demersum
CDE02G2215 Ceratophyllum demersum
CDE09G0237 Ceratophyllum demersum
CDE09G0925 Ceratophyllum demersum
Cfa003147 Carpinus fangiana
Cfa003148 Carpinus fangiana
Cfa025125 Carpinus fangiana
Ciclev10005543m.g Citrus clementina
Ciclev10008962m.g Citrus clementina
Ciclev10010267m.g Citrus clementina
Ciclev10026154m.g Citrus clementina
CiPaw.01G228600 Carya illinoinensis
CiPaw.02G144200 Carya illinoinensis
CiPaw.03G220800 Carya illinoinensis
CiPaw.04G154100 Carya illinoinensis
CiPaw.05G218900 Carya illinoinensis
ClCG03G015960 Citrullus lanatus
ClCG07G013480 Citrullus lanatus
ClCG11G001930 Citrullus lanatus
COL.COLO4_17007 Corchorus olitorius
COL.COLO4_17008 Corchorus olitorius
COL.COLO4_18265 Corchorus olitorius
COL.COLO4_18266 Corchorus olitorius
COL.COLO4_27665 Corchorus olitorius
COL.COLO4_30172 Corchorus olitorius
COL.COLO4_30546 Corchorus olitorius
Cpa.g.c26718.2 Carica papaya
Cpa.g.sc78.51 Carica papaya
Cre01.g025850 Chlamydomonas reinhardtii
CsaV3_1G040000 Cucumis sativus L.
CsaV3_2G001660 Cucumis sativus L.
CsaV3_3G023420 Cucumis sativus L.
CSS0008033 Camellia sinensis var. sinensis
CSS0015365 Camellia sinensis var. sinensis
CSS0027783 Camellia sinensis var. sinensis
CSS0030747 Camellia sinensis var. sinensis
CSS0032632 Camellia sinensis var. sinensis
CSS0039235 Camellia sinensis var. sinensis
DCAR_007599 Daucus carota
DCAR_012018 Daucus carota
Dinv30418 Davidia involucrata
Dinv36706 Davidia involucrata
Dinv37957 Davidia involucrata
Dinv42276 Davidia involucrata
Duzib068G0941 Durio zibethinus
Duzib068G1471 Durio zibethinus
Duzib084G0062 Durio zibethinus
Duzib150G0875 Durio zibethinus
Duzib168G2400 Durio zibethinus
Duzib235G0894 Durio zibethinus
ECA232G1002 Erigeron canadensis
ECA236G0918 Erigeron canadensis
EL10Ac8g18339 Beta vulgaris
Eucgr.C00949 Eucalyptus grandis
Eucgr.F03092 Eucalyptus grandis
Eucgr.G02560 Eucalyptus grandis
FAN02G2728 Fragaria x ananassa
FAN04G3073 Fragaria x ananassa
FAN05G4438 Fragaria x ananassa
FAN07G0093 Fragaria x ananassa
FAN08G1622 Fragaria x ananassa
FAN08G3276 Fragaria x ananassa
FAN12G3613 Fragaria x ananassa
FAN13G1097 Fragaria x ananassa
FAN13G1361 Fragaria x ananassa
FAN17G1520 Fragaria x ananassa
FAN18G0832 Fragaria x ananassa
FAN18G3706 Fragaria x ananassa
FAN19G2272 Fragaria x ananassa
FAN22G1833 Fragaria x ananassa
FAN23G1461 Fragaria x ananassa
FAN26G0262 Fragaria x ananassa
FAN26G1780 Fragaria x ananassa
FvH4_1g06630 Fragaria vesca
FvH4_4g36370 Fragaria vesca
FvH4_5g01690 Fragaria vesca
FvH4_5g20650 Fragaria vesca
FvH4_6g32720 Fragaria vesca
Glyma.01G005100 Glycine max
Glyma.05G224500 Glycine max
Glyma.07G013900 Glycine max
Glyma.07G126600 Glycine max
Glyma.08G199300 Glycine max
Gohir.A03G000054 Gossypium hirsutum
Gohir.A05G132700 Gossypium hirsutum
Gohir.A06G069600 Gossypium hirsutum
Gohir.A10G063900 Gossypium hirsutum
Gohir.A12G207950 Gossypium hirsutum
Gohir.D03G172500 Gossypium hirsutum
Gohir.D05G134700 Gossypium hirsutum
Gohir.D06G068200 Gossypium hirsutum
Gohir.D10G065500 Gossypium hirsutum
Gohir.D12G158701 Gossypium hirsutum
Gohir.D12G210500 Gossypium hirsutum
Gorai.003G183200 Gossypium raimondii
Gorai.008G171600 Gossypium raimondii
Gorai.008G226000 Gossypium raimondii
Gorai.009G138300 Gossypium raimondii
Gorai.010G079700 Gossypium raimondii
Gorai.011G069500 Gossypium raimondii
GSVIVG01015266001 Vitis vinifera
GSVIVG01016929001 Vitis vinifera
GSVIVG01016931001 Vitis vinifera
HanXRQChr04g0111091 Helianthus annuus
HanXRQChr04g0111101 Helianthus annuus
HanXRQChr06g0172121 Helianthus annuus
HanXRQChr13g0418101 Helianthus annuus
HanXRQChr13g0418111 Helianthus annuus
HanXRQChr13g0419041 Helianthus annuus
Haze_00402 Corylus avellana
Haze_15880 Corylus avellana
Haze_15882 Corylus avellana
Haze_15887 Corylus avellana
Haze_25855 Corylus avellana
Haze_26435 Corylus avellana
Hma1.2p1_0663F.1_g198560 Hydrangea macrophylla
Hma1.2p1_0764F.1_g214970 Hydrangea macrophylla
Hma1.2p1_0764F.1_g214980 Hydrangea macrophylla
Hma1.2p1_2308F.1_g319475 Hydrangea macrophylla
HPP92_002821 Vanilla planifolia
HPP92_002879 Vanilla planifolia
HPP92_002890 Vanilla planifolia
Hund00713 Selenicereus undatus
Hund09064 Selenicereus undatus
Hund26304 Selenicereus undatus
Lalb_Chr04g0263021 Lupinus albus
Lalb_Chr14g0375251 Lupinus albus
Lalb_Chr24g0393971 Lupinus albus
Lj1A227T7 Lonicera japonica
Lj1C245T1 Lonicera japonica
Lj2A975T20 Lonicera japonica
Lj2A975T21 Lonicera japonica
Lj2g0000270 Lotus japonicus
Lj2g0020184 Lotus japonicus
Lj3A923T53 Lonicera japonica
Lj3g0009251 Lotus japonicus
Lj4A367G3 Lonicera japonica
Lj4g0011282 Lotus japonicus
Lj5C51G3 Lonicera japonica
Lj7A669T62 Lonicera japonica
Lj9C515T7 Lonicera japonica
Lsat_1_v5_gn_4_96981 Lactuca sativa
Lsat_1_v5_gn_7_43880 Lactuca sativa
Lsat_1_v5_gn_8_88321 Lactuca sativa
Manes.04G136300 Manihot esculenta
Manes.11G030400 Manihot esculenta
Manes.16G106200 Manihot esculenta
MBI01_g35896_MAGBIO Magnolia biondii
MBI01_g35897_MAGBIO Magnolia biondii
MBI01_g35898_MAGBIO Magnolia biondii
MD02G1069300 Malus domestica
MD12G1147200 Malus domestica
MD15G1201000 Malus domestica
MD16G1007900 Malus domestica
MD17G1179500 Malus domestica
MD17G1179700 Malus domestica
Medtr8g015220 Medicago truncatula
Medtr8g102150 Medicago truncatula
MELO3C004609.2 Cucumis melo
MELO3C013014.2 Cucumis melo
MELO3C015430.2 Cucumis melo
Migut.I00968 Erythranthe guttata
Migut.I00976 Erythranthe guttata
Migut.J01073 Erythranthe guttata
Migut.J01074 Erythranthe guttata
Migut.K00564 Erythranthe guttata
MSTRG.11014 Avicennia marina
Nitab4.5_0000300g0140 Nicotiana tabacum
Nitab4.5_0001781g0220 Nicotiana tabacum
Nitab4.5_0003185g0030 Nicotiana tabacum
Nitab4.5_0004011g0010 Nicotiana tabacum
Nitab4.5_0007799g0050 Nicotiana tabacum
Nitab4.5_0010357g0040 Nicotiana tabacum
Nitab4.5_0014121g0010 Nicotiana tabacum
Nitab4.5_0017035g0010 Nicotiana tabacum
Nn1g08782 Nelumbo nucifera
Nn6g35367 Nelumbo nucifera
Nn8g38992 Nelumbo nucifera
Nn8g38996 Nelumbo nucifera
Oeu000338.1 Olea europaea
Oeu021463.1 Olea europaea
Oeu026726.1 Olea europaea
Oeu052828.1 Olea europaea
Os06g0561000 Oryza sativa ssp. japonica
Peaxi162Scf00038g01150 Petunia axillaris
Peaxi162Scf00207g01133 Petunia axillaris
Peaxi162Scf00519g00424 Petunia axillaris
Peaxi162Scf00725g00521 Petunia axillaris
Peaxi162Scf00944g00145 Petunia axillaris
Peaxi162Scf01426g00001 Petunia axillaris
PGR004G0389 Punica granatum
PGR102G3126 Punica granatum
PGR142G0726 Punica granatum
PGSC0003DMG400001976 Solanum tuberosum
PGSC0003DMG400004872 Solanum tuberosum
PGSC0003DMG400016876 Solanum tuberosum
PGSC0003DMG401000287 Solanum tuberosum
Phvul.002G188900 Phaseolus vulgaris
Phvul.002G189000 Phaseolus vulgaris
Phvul.002G189100 Phaseolus vulgaris
Phvul.002G306200 Phaseolus vulgaris
Phvul.002G306300 Phaseolus vulgaris
Phvul.002G306400 Phaseolus vulgaris
Phvul.002G306500 Phaseolus vulgaris
Phvul.010G143500 Phaseolus vulgaris
Potri.008G144500 Populus trichocarpa
Potri.017G100200 Populus trichocarpa
Potri.018G069700 Populus trichocarpa
Pp3c20_12850 Physcomitrium patens
PRCOL_00003307 Prasinoderma coloniale
Prupe.1G343000 Prunus persica
Prupe.2G089300 Prunus persica
Prupe.3G055000 Prunus persica
Prupe.5G054000 Prunus persica
Prupe.5G054100 Prunus persica
Prupe.7G216300 Prunus persica
Psat4g196000 Pisum sativum
Psat7g019040 Pisum sativum
PSO210G0613 Papaver somniferum
PSO210G3452 Papaver somniferum
PSO210G7331 Papaver somniferum
PSO210G7408 Papaver somniferum
QL02p040350 Quercus lobata
QL03p041983 Quercus lobata
QL05p018111 Quercus lobata
QL05p018253 Quercus lobata
QL08p011530 Quercus lobata
QL08p056734 Quercus lobata
QL08p056745 Quercus lobata
QL09p023502 Quercus lobata
QL09p023521 Quercus lobata
QL09p023561 Quercus lobata
QL09p023585 Quercus lobata
QL09p023637 Quercus lobata
QL09p023662 Quercus lobata
QL09p023689 Quercus lobata
RcHm_v2.0_Chr2g0092361 Rosa chinensis
RcHm_v2.0_Chr2g0141741 Rosa chinensis
RcHm_v2.0_Chr4g0446111 Rosa chinensis
RcHm_v2.0_Chr7g0199031 Rosa chinensis
RcHm_v2.0_Chr7g0206031 Rosa chinensis
RcHm_v2.0_Chr7g0206141 Rosa chinensis
RcHm_v2.0_Chr7g0206211 Rosa chinensis
Rhsim08G0229400 Rhododendron simsii
Rhsim11G0048700 Rhododendron simsii
Sabra03G0062400 Salix brachista
Sabra08G0109600 Salix brachista
Sabra18G0061000 Salix brachista
SalBow1G0398 Salvia bowleyana
SalBow1G7888 Salvia bowleyana
SalBow3G2179 Salvia bowleyana
Sc10g0007690 Simmondsia chinensis
Sc12g0010030 Simmondsia chinensis
Sc14g0000460 Simmondsia chinensis
Sc15g0001690 Simmondsia chinensis
Sed0000057 Sechium edule
Sed0010380 Sechium edule
SEGI_00641 Sequoiadendron giganteum
SEGI_01418 Sequoiadendron giganteum
SEGI_10858 Sequoiadendron giganteum
SEGI_14961 Sequoiadendron giganteum
SEGI_28718 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05176 Striga asiatica
SGA_v2.0_scaffold62G21571 Striga asiatica
SGA_v2.0_scaffold71G23726 Striga asiatica
SGA_v2.0_scaffold71G23731 Striga asiatica
SMO347G0258 Selaginella moellendorffii
Solyc06g062430.3 Solanum lycopersicum
Solyc10g005400.3 Solanum lycopersicum
Solyc11g006570.3 Solanum lycopersicum
Solyc12g008650.2 Solanum lycopersicum
Solyc12g098120.3 Solanum lycopersicum
Sopen06g021910 Solanum pennellii
Sopen10g001390 Solanum pennellii
Sopen11g002470 Solanum pennellii
Sopen11g002490 Solanum pennellii
Sopen11g002510 Solanum pennellii
Sopen12g003590 Solanum pennellii
Sopen12g032950 Solanum pennellii
Sp1g12880 Schrenkiella parvula
Sp3g33150 Schrenkiella parvula
Sp6g18420 Schrenkiella parvula
Sp7g24250 Schrenkiella parvula
SpUn0399_0030 Schrenkiella parvula
TAR383G0737 Trochodendron aralioides
TAR626G0954 Trochodendron aralioides
TAR626G1096 Trochodendron aralioides
TAR626G1136 Trochodendron aralioides
TAR626G1539 Trochodendron aralioides
THA.LOC104805124 Tarenaya hassleriana
THA.LOC104811729 Tarenaya hassleriana
THA.LOC104814581 Tarenaya hassleriana
Thecc.02G311000 Theobroma cacao
Thecc.03G225800 Theobroma cacao
Thecc.06G103100 Theobroma cacao
Thecc.06G103300 Theobroma cacao
Thecc.09G096100 Theobroma cacao
Thecc.09G096300 Theobroma cacao
Thecc.09G096400 Theobroma cacao
Thhalv10002046m.g Eutrema salsugineum
Thhalv10009301m.g Eutrema salsugineum
Thhalv10014148m.g Eutrema salsugineum
Thhalv10025773m.g Eutrema salsugineum
TPR.G35156 Trifolium pratense
TPR.G39765 Trifolium pratense
TPR.G9226 Trifolium pratense
TWI32G0361 Tripterygium wilfordii
TWI34G0963 Tripterygium wilfordii
TWI74G0185 Tripterygium wilfordii
TWI75G0162 Tripterygium wilfordii
unitig_37.g12271 Utricularia gibba
vmacro00176 Vaccinium macrocarpon
vmacro00177 Vaccinium macrocarpon
vmacro18836 Vaccinium macrocarpon
VMungo0251G1405 Vigna mungo
VMungo0331G0373 Vigna mungo
Zm00001eb384280 Zea mays

User provided reference genes

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