Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p03950 Brassica napus
A04p30820 Brassica napus
A04p30880 Brassica napus
A05p01690 Brassica napus
A07p10760 Brassica napus
A07p22830 Brassica napus
A09p49200 Brassica napus
Aa31LG5G19120 Aethionema arabicum
Aa31LG6G6260 Aethionema arabicum
Actinidia11531 Actinidia chinensis
Actinidia16777 Actinidia chinensis
Actinidia29051 Actinidia chinensis
Actinidia29741 Actinidia chinensis
Actinidia33887 Actinidia chinensis
Actinidia35598 Actinidia chinensis
Ah.16g104100 Amaranthus hybridus
AL1G43060 Arabidopsis lyrata
AL4G38270 Arabidopsis lyrata
AL5G37540 Arabidopsis lyrata
Aqoxy1G01998 Aquilegia oxysepala
Aqoxy4G02152 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A8KLXT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C25ZDC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ENL36S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HFR303 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IXT3G0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K03AQQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MV2SR8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NQPD42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PE6L90 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R1RGSZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4XPT2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R5V7VH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RFY6UR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2RFJB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W40KSR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YDS48V Arachis hypogaea
AT1G29270 Arabidopsis thaliana
AT2G40435 Arabidopsis thaliana
AT3G56220 Arabidopsis thaliana
ATR0012G037 Amborella trichopoda
ATR1127G099 Amborella trichopoda
Atru.chr1.2557 Acer truncatum
Atru.chr10.1575 Acer truncatum
Atru.chr12.141 Acer truncatum
Atru.chr8.2368 Acer truncatum
AUR62006335 Chenopodium quinoa
AUR62012336 Chenopodium quinoa
AUR62022980 Chenopodium quinoa
AUR62026372 Chenopodium quinoa
BcaB02g07664 Brassica carinata
BcaB02g08379 Brassica carinata
BcaB03g13893 Brassica carinata
BcaB06g29141 Brassica carinata
BcaC02g07311 Brassica carinata
BcaC02g09815 Brassica carinata
BcaC02g12713 Brassica carinata
BcaC06g35421 Brassica carinata
BcaC07g39938 Brassica carinata
BcaC08g44767 Brassica carinata
BolC4t21845H Brassica oleracea
BolC4t25168H Brassica oleracea
BolC4t28329H Brassica oleracea
BolC4t28331H Brassica oleracea
BolC6t37513H Brassica oleracea
BolC7t42131H Brassica oleracea
BolC8t50776H Brassica oleracea
BraA04t16115Z Brassica rapa
BraA04t18541Z Brassica rapa
BraA05t19166Z Brassica rapa
BraA07t28870Z Brassica rapa
BraA07t29948Z Brassica rapa
BraA09t40373Z Brassica rapa
C04p01950 Brassica napus
C04p36290 Brassica napus
C04p68260 Brassica napus
C04p68280 Brassica napus
C06p23380 Brassica napus
C07p16370 Brassica napus
C08p31540 Brassica napus
CAN.G118.17 Capsicum annuum
CAN.G866.32 Capsicum annuum
CANSAT35G1960 Cannabis sativa
CANSAT56G2731 Cannabis sativa
CARHR028590 Cardamine hirsuta
CARHR135550 Cardamine hirsuta
CARHR166370 Cardamine hirsuta
Carub.0001s2748 Capsella rubella
Carub.0004s2269 Capsella rubella
Carub.0005s2300 Capsella rubella
Ca_13018_v3 Cicer arietinum L.
Ca_17900_v3 Cicer arietinum L.
Cc02_g05700 Coffea canephora
Cc02_g15540 Coffea canephora
Cc06_g00580 Coffea canephora
CDE06G0610 Ceratophyllum demersum
CDE06G2729 Ceratophyllum demersum
CDE07G1206 Ceratophyllum demersum
Cfa000649 Carpinus fangiana
Cfa001237 Carpinus fangiana
Cfa011798 Carpinus fangiana
Ciclev10012991m.g Citrus clementina
Ciclev10016999m.g Citrus clementina
Ciclev10032961m.g Citrus clementina
Ciclev10033300m.g Citrus clementina
CiPaw.01G303700 Carya illinoinensis
CiPaw.02G197500 Carya illinoinensis
CiPaw.09G072500 Carya illinoinensis
CiPaw.09G217700 Carya illinoinensis
CiPaw.10G163400 Carya illinoinensis
CiPaw.13G066800 Carya illinoinensis
ClCG01G023870 Citrullus lanatus
ClCG04G006520 Citrullus lanatus
ClCG11G005870 Citrullus lanatus
COL.COLO4_11181 Corchorus olitorius
COL.COLO4_29264 Corchorus olitorius
COL.COLO4_31243 Corchorus olitorius
COL.COLO4_36097 Corchorus olitorius
Cpa.g.c39780 Carica papaya
Cpa.g.sc19.98 Carica papaya
Cpa.g.sc7.94 Carica papaya
CsaV3_4G027000 Cucumis sativus L.
CsaV3_6G002130 Cucumis sativus L.
CsaV3_6G051020 Cucumis sativus L.
CSS0009613 Camellia sinensis var. sinensis
CSS0016830 Camellia sinensis var. sinensis
CSS0019528 Camellia sinensis var. sinensis
CSS0025984 Camellia sinensis var. sinensis
CSS0035355 Camellia sinensis var. sinensis
CSS0045370 Camellia sinensis var. sinensis
DCAR_005135 Daucus carota
DCAR_011898 Daucus carota
DCAR_028545 Daucus carota
Dinv10557 Davidia involucrata
Dinv11395 Davidia involucrata
Dinv12758 Davidia involucrata
Dinv21813 Davidia involucrata
Dinv25298 Davidia involucrata
Dinv32343 Davidia involucrata
Duzib147G1434 Durio zibethinus
Duzib151G0922 Durio zibethinus
Duzib160G0077 Durio zibethinus
Duzib168G1504 Durio zibethinus
Duzib212G0276 Durio zibethinus
Duzib235G0112 Durio zibethinus
Duzib264G0849 Durio zibethinus
ECA232G1367 Erigeron canadensis
ECA238G1108 Erigeron canadensis
EL10Ac2g04289 Beta vulgaris
EL10Ac7g17044 Beta vulgaris
EL10Ac8g20563 Beta vulgaris
Eucgr.A00656 Eucalyptus grandis
Eucgr.D00475 Eucalyptus grandis
Eucgr.G03115 Eucalyptus grandis
Eucgr.K01270 Eucalyptus grandis
FAN01G1346 Fragaria x ananassa
FAN02G0637 Fragaria x ananassa
FAN03G0480 Fragaria x ananassa
FAN05G1548 Fragaria x ananassa
FAN05G5350 Fragaria x ananassa
FAN06G4664 Fragaria x ananassa
FAN09G1824 Fragaria x ananassa
FAN10G3114 Fragaria x ananassa
FAN11G3009 Fragaria x ananassa
FAN11G3521 Fragaria x ananassa
FAN13G2418 Fragaria x ananassa
FAN14G1740 Fragaria x ananassa
FAN16G1142 Fragaria x ananassa
FAN16G2157 Fragaria x ananassa
FAN21G0770 Fragaria x ananassa
FAN21G1795 Fragaria x ananassa
FAN25G1823 Fragaria x ananassa
FAN25G3262 Fragaria x ananassa
FvH4_3g07370 Fragaria vesca
FvH4_3g40050 Fragaria vesca
FvH4_6g10480 Fragaria vesca
FvH4_7g25520 Fragaria vesca
Glyma.01G129700 Glycine max
Glyma.02G233300 Glycine max
Glyma.02G259800 Glycine max
Glyma.03G040500 Glycine max
Glyma.05G160700 Glycine max
Glyma.08G118100 Glycine max
Glyma.09G278100 Glycine max
Glyma.11G162500 Glycine max
Glyma.11G234800 Glycine max
Glyma.14G053900 Glycine max
Glyma.14G201300 Glycine max
Glyma.18G022200 Glycine max
Glyma.18G055800 Glycine max
Glyma.18G210700 Glycine max
Gohir.1Z049320 Gossypium hirsutum
Gohir.1Z049543 Gossypium hirsutum
Gohir.A02G005100 Gossypium hirsutum
Gohir.A05G153700 Gossypium hirsutum
Gohir.A05G342100 Gossypium hirsutum
Gohir.A06G132900 Gossypium hirsutum
Gohir.A08G203800 Gossypium hirsutum
Gohir.A09G032400 Gossypium hirsutum
Gohir.A10G035000 Gossypium hirsutum
Gohir.A10G148500 Gossypium hirsutum
Gohir.D02G005500 Gossypium hirsutum
Gohir.D04G080300 Gossypium hirsutum
Gohir.D05G156400 Gossypium hirsutum
Gohir.D06G138400 Gossypium hirsutum
Gohir.D08G221100 Gossypium hirsutum
Gohir.D09G032400 Gossypium hirsutum
Gohir.D10G035700 Gossypium hirsutum
Gohir.D10G118200 Gossypium hirsutum
Gorai.004G234800 Gossypium raimondii
Gorai.005G006200 Gossypium raimondii
Gorai.006G037400 Gossypium raimondii
Gorai.009G160900 Gossypium raimondii
Gorai.010G160900 Gossypium raimondii
Gorai.011G037600 Gossypium raimondii
Gorai.011G130000 Gossypium raimondii
Gorai.012G090800 Gossypium raimondii
GSVIVG01020751001 Vitis vinifera
GSVIVG01021251001 Vitis vinifera
GSVIVG01024605001 Vitis vinifera
GSVIVG01030222001 Vitis vinifera
GSVIVG01032720001 Vitis vinifera
HanXRQChr01g0007091 Helianthus annuus
HanXRQChr07g0203571 Helianthus annuus
HanXRQChr09g0251591 Helianthus annuus
HanXRQChr15g0493821 Helianthus annuus
Haze_06180 Corylus avellana
Haze_17324 Corylus avellana
Haze_21128 Corylus avellana
Haze_24437 Corylus avellana
Hma1.2p1_0829F.1_g225230 Hydrangea macrophylla
Hma1.2p1_1240F.1_g269590 Hydrangea macrophylla
Hma1.2p1_1349F.1_g277390 Hydrangea macrophylla
HPP92_003681 Vanilla planifolia
HPP92_011992 Vanilla planifolia
HPP92_013853 Vanilla planifolia
HPP92_013867 Vanilla planifolia
Hund13510 Selenicereus undatus
Hund15850 Selenicereus undatus
Hund19804 Selenicereus undatus
Hund21446 Selenicereus undatus
Lalb_Chr07g0186331 Lupinus albus
Lalb_Chr07g0190771 Lupinus albus
Lalb_Chr11g0075171 Lupinus albus
Lalb_Chr12g0204971 Lupinus albus
Lalb_Chr15g0083371 Lupinus albus
Lalb_Chr17g0347051 Lupinus albus
Lalb_Chr18g0051551 Lupinus albus
Lalb_Chr19g0124101 Lupinus albus
Lalb_Chr23g0277201 Lupinus albus
Lj1g0023424 Lotus japonicus
Lj1P964T16 Lonicera japonica
Lj2P63T40 Lonicera japonica
Lj3g0020806 Lotus japonicus
Lj4g0009651 Lotus japonicus
Lj6g0027746 Lotus japonicus
Lj8C58T8 Lonicera japonica
LjContig00357g0018805 Lotus japonicus
Lsat_1_v5_gn_2_126000 Lactuca sativa
Lsat_1_v5_gn_5_151201 Lactuca sativa
Lsat_1_v5_gn_9_58821 Lactuca sativa
Manes.07G139200 Manihot esculenta
Manes.08G172700 Manihot esculenta
Manes.09G115200 Manihot esculenta
Manes.10G006500 Manihot esculenta
Manes.16G038700 Manihot esculenta
Manes.17G058800 Manihot esculenta
MBI15_g26251_MAGBIO Magnolia biondii
MD01G1161700 Malus domestica
MD03G1058700 Malus domestica
MD04G1170700 Malus domestica
MD05G1295800 Malus domestica
MD07G1229600 Malus domestica
MD07G1229700 Malus domestica
MD10G1275900 Malus domestica
MD11G1060700 Malus domestica
MD12G1184400 Malus domestica
Medtr3g466150 Medicago truncatula
Medtr5g083810 Medicago truncatula
Medtr7g072470 Medicago truncatula
Medtr8g085150 Medicago truncatula
Medtr8g087020 Medicago truncatula
MELO3C007201.2 Cucumis melo
MELO3C019989.2 Cucumis melo
MELO3C026050.2 Cucumis melo
Migut.F00580 Erythranthe guttata
Migut.F01264 Erythranthe guttata
Migut.H01417 Erythranthe guttata
Migut.J00069 Erythranthe guttata
Migut.L00714 Erythranthe guttata
MSTRG.13230 Avicennia marina
MSTRG.16167 Avicennia marina
MSTRG.18961 Avicennia marina
MSTRG.27287 Avicennia marina
MSTRG.5519 Avicennia marina
MSTRG.7426 Avicennia marina
MSTRG.8362 Avicennia marina
MSTRG.8907 Avicennia marina
Nitab4.5_0000195g0050 Nicotiana tabacum
Nitab4.5_0000263g0090 Nicotiana tabacum
Nitab4.5_0000928g0060 Nicotiana tabacum
Nitab4.5_0002195g0010 Nicotiana tabacum
Nitab4.5_0002458g0050 Nicotiana tabacum
Nitab4.5_0005428g0040 Nicotiana tabacum
Nn1g04511 Nelumbo nucifera
Nn2g11078 Nelumbo nucifera
Nn2g13309 Nelumbo nucifera
Nn3g21110 Nelumbo nucifera
Oeu017759.1 Olea europaea
Oeu024605.2 Olea europaea
Oeu024723.2 Olea europaea
Oeu026432.2 Olea europaea
Oeu026965.1 Olea europaea
Oeu039884.1 Olea europaea
Oeu041734.1 Olea europaea
Oeu057645.1 Olea europaea
Oeu060166.1 Olea europaea
Os03g0338400 Oryza sativa ssp. japonica
Os05g0337200 Oryza sativa ssp. japonica
Os07g0676600 Oryza sativa ssp. japonica
Os11g0111800 Oryza sativa ssp. japonica
Os12g0111400 Oryza sativa ssp. japonica
Peaxi162Scf00284g00025 Petunia axillaris
Peaxi162Scf00405g00117 Petunia axillaris
Peaxi162Scf00732g00442 Petunia axillaris
PGR031G1877 Punica granatum
PGR042G0512 Punica granatum
PGR044G2016 Punica granatum
PGR142G2404 Punica granatum
PGSC0003DMG400026576 Solanum tuberosum
PGSC0003DMG400026751 Solanum tuberosum
PGSC0003DMG400027979 Solanum tuberosum
Phvul.001G248200 Phaseolus vulgaris
Phvul.002G240800 Phaseolus vulgaris
Phvul.006G075400 Phaseolus vulgaris
Phvul.008G087200 Phaseolus vulgaris
Phvul.008G218900 Phaseolus vulgaris
Phvul.008G250400 Phaseolus vulgaris
Phvul.010G078900 Phaseolus vulgaris
Potri.004G060800 Populus trichocarpa
Potri.006G106900 Populus trichocarpa
Potri.011G070000 Populus trichocarpa
Potri.013G154100 Populus trichocarpa
Potri.016G132600 Populus trichocarpa
Potri.019G126800 Populus trichocarpa
Prupe.2G259900 Prunus persica
Prupe.4G066300 Prunus persica
Prupe.6G045200 Prunus persica
Prupe.6G289300 Prunus persica
Psat0s2741g0080 Pisum sativum
Psat2g024600 Pisum sativum
Psat3g192120 Pisum sativum
Psat5g150720 Pisum sativum
Psat7g069880 Pisum sativum
PSO017G6968 Papaver somniferum
PSO170G1859 Papaver somniferum
PSO170G6757 Papaver somniferum
PSO782G3214 Papaver somniferum
QL01p025528 Quercus lobata
QL05p049746 Quercus lobata
QL07p033204 Quercus lobata
QL08p064305 Quercus lobata
RcHm_v2.0_Chr1g0371511 Rosa chinensis
RcHm_v2.0_Chr3g0461381 Rosa chinensis
RcHm_v2.0_Chr5g0011571 Rosa chinensis
RcHm_v2.0_Chr5g0072201 Rosa chinensis
Rhsim03G0149700 Rhododendron simsii
Rhsim05G0228400 Rhododendron simsii
Sabra04G0040100 Salix brachista
Sabra04G0150500 Salix brachista
Sabra06G0083200 Salix brachista
Sabra11G0058000 Salix brachista
Sabra13G0123900 Salix brachista
Sabra19G0124500 Salix brachista
Sabra19G0124900 Salix brachista
Sabra19G0130100 Salix brachista
SalBow7G3660 Salvia bowleyana
Sc05g0006910 Simmondsia chinensis
Sc11g0005650 Simmondsia chinensis
Sed0000998 Sechium edule
Sed0015444 Sechium edule
Sed0025063 Sechium edule
Sed0025179 Sechium edule
Sed0026621 Sechium edule
SEGI_20369 Sequoiadendron giganteum
SEGI_24261 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00076 Striga asiatica
SGA_v2.0_scaffold60G20934 Striga asiatica
SGA_v2.0_scaffold85G26655 Striga asiatica
SHI12906 Sapria himalayana
Solyc03g006040.3 Solanum lycopersicum
Solyc09g018500.3 Solanum lycopersicum
Sopen03g002050 Solanum pennellii
Sopen06g016530 Solanum pennellii
Sopen09g011760 Solanum pennellii
Sp1g25200 Schrenkiella parvula
Sp4g22780 Schrenkiella parvula
Sp5g06280 Schrenkiella parvula
TAR369G0874 Trochodendron aralioides
TAR626G0916 Trochodendron aralioides
TAR626G1246 Trochodendron aralioides
TAR629G2569 Trochodendron aralioides
TAR633G1114 Trochodendron aralioides
THA.LOC104810137 Tarenaya hassleriana
THA.LOC104812010 Tarenaya hassleriana
THA.LOC104812642 Tarenaya hassleriana
THA.LOC104820606 Tarenaya hassleriana
THA.LOC104824590 Tarenaya hassleriana
Thecc.04G025700 Theobroma cacao
Thecc.04G156200 Theobroma cacao
Thecc.06G166200 Theobroma cacao
Thecc.09G360600 Theobroma cacao
Thhalv10006289m.g Eutrema salsugineum
Thhalv10009779m.g Eutrema salsugineum
Thhalv10017347m.g Eutrema salsugineum
TPR.G14837 Trifolium pratense
TPR.G20204 Trifolium pratense
TPR.G24974 Trifolium pratense
TPR.G33016 Trifolium pratense
TPR.G6742 Trifolium pratense
TPR.G6770 Trifolium pratense
TWI09G0354 Tripterygium wilfordii
TWI09G1078 Tripterygium wilfordii
TWI53G0201 Tripterygium wilfordii
TWI73G0257 Tripterygium wilfordii
TWI74G0938 Tripterygium wilfordii
TWI77G0034 Tripterygium wilfordii
unitig_0.g2520 Utricularia gibba
unitig_578.g15910 Utricularia gibba
vmacro06925 Vaccinium macrocarpon
vmacro20349 Vaccinium macrocarpon
VMungo0251G3022 Vigna mungo
VMungo0331G1689 Vigna mungo
VMungo0540G1439 Vigna mungo
VMungo0647G1157 Vigna mungo
VMungo0647G2060 Vigna mungo
VMungo1383G0765 Vigna mungo
VMungo1383G1922 Vigna mungo
Zm00001eb016200 Zea mays
Zm00001eb286720 Zea mays
Zm00001eb395050 Zea mays

User provided reference genes

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