Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p42700 Brassica napus
A05p26480 Brassica napus
A07p14690 Brassica napus
A07p43320 Brassica napus
A08p07990 Brassica napus
A09p42570 Brassica napus
Aa31LG4G8130 Aethionema arabicum
Aa31LG6G8930 Aethionema arabicum
Aa31LG7G6140 Aethionema arabicum
Aa31LG8G8860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4133 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4134 Anthoceros agrestis
Actinidia03332 Actinidia chinensis
Actinidia10309 Actinidia chinensis
Actinidia25735 Actinidia chinensis
Actinidia29258 Actinidia chinensis
Actinidia30758 Actinidia chinensis
Ah.01g002080 Amaranthus hybridus
Ah.05g170250 Amaranthus hybridus
Ah.05g170260 Amaranthus hybridus
AL1G35650 Arabidopsis lyrata
AL1G50820 Arabidopsis lyrata
AL3G36560 Arabidopsis lyrata
AL7G41320 Arabidopsis lyrata
AL8G37400 Arabidopsis lyrata
Aqoxy1G01591 Aquilegia oxysepala
Aqoxy2G00071 Aquilegia oxysepala
Aqoxy6G00594 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.51PMVG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.77EQEL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B8M0JB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C5YUKW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EX4ZWX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GM5FYT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SM27GK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T1P5QB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XQVZ33 Arachis hypogaea
AT1G22200 Arabidopsis thaliana
AT1G36050 Arabidopsis thaliana
AT3G22290 Arabidopsis thaliana
ATR0564G379 Amborella trichopoda
ATR0749G007 Amborella trichopoda
Atru.chr13.1230 Acer truncatum
Atru.chr6.1110 Acer truncatum
Atru.chr8.946 Acer truncatum
AUR62010116 Chenopodium quinoa
AUR62013111 Chenopodium quinoa
AUR62015181 Chenopodium quinoa
AUR62017636 Chenopodium quinoa
AUR62018917 Chenopodium quinoa
AUR62027728 Chenopodium quinoa
BcaB03g14228 Brassica carinata
BcaB03g15974 Brassica carinata
BcaB04g17833 Brassica carinata
BcaB04g19196 Brassica carinata
BcaB06g26333 Brassica carinata
BcaB07g32239 Brassica carinata
BcaB07g32240 Brassica carinata
BcaC01g03455 Brassica carinata
BcaC05g26148 Brassica carinata
BcaC05g28084 Brassica carinata
BcaC06g34937 Brassica carinata
BcaC07g37508 Brassica carinata
BcaC08g47382 Brassica carinata
BcaC08g47383 Brassica carinata
BolC3t17511H Brassica oleracea
BolC5t30831H Brassica oleracea
BolC5t32849H Brassica oleracea
BolC6t40227H Brassica oleracea
BolC7t42683H Brassica oleracea
BolC8t47828H Brassica oleracea
BraA03t13417Z Brassica rapa
BraA05t21521Z Brassica rapa
BraA07t29212Z Brassica rapa
BraA07t31853Z Brassica rapa
BraA08t32823Z Brassica rapa
BraA09t39732Z Brassica rapa
C01p44760 Brassica napus
C03p52390 Brassica napus
C05p21330 Brassica napus
C05p41070 Brassica napus
C06p52040 Brassica napus
C07p21580 Brassica napus
CAN.G1261.10 Capsicum annuum
CAN.G1664.6 Capsicum annuum
CAN.G523.78 Capsicum annuum
CAN.G946.3 Capsicum annuum
CANSAT11G0506 Cannabis sativa
CANSAT11G1977 Cannabis sativa
CANSAT25G1498 Cannabis sativa
CANSAT64G0854 Cannabis sativa
CARHR022550 Cardamine hirsuta
CARHR034660 Cardamine hirsuta
CARHR098190 Cardamine hirsuta
Carub.0001s2175 Capsella rubella
Carub.0001s3355 Capsella rubella
Carub.0003s2246 Capsella rubella
Ca_16313_v3 Cicer arietinum L.
Ca_18344_v3 Cicer arietinum L.
Ca_25832_v3 Cicer arietinum L.
CBR_g18620 Chara braunii
CBR_g72627 Chara braunii
Cc02_g21640 Coffea canephora
Cc05_g00610 Coffea canephora
Cc10_g07440 Coffea canephora
Cc10_g07450 Coffea canephora
CDE02G2167 Ceratophyllum demersum
CDE04G2766 Ceratophyllum demersum
CDE06G0807 Ceratophyllum demersum
CDE09G0402 Ceratophyllum demersum
CDE11G0481 Ceratophyllum demersum
CDE12G0887 Ceratophyllum demersum
Cfa004405 Carpinus fangiana
Cfa005609 Carpinus fangiana
Cfa022023 Carpinus fangiana
Cfa026654 Carpinus fangiana
Ciclev10001505m.g Citrus clementina
Ciclev10012850m.g Citrus clementina
CiPaw.01G056700 Carya illinoinensis
CiPaw.04G198500 Carya illinoinensis
CiPaw.06G053000 Carya illinoinensis
CiPaw.06G152700 Carya illinoinensis
CiPaw.07G146000 Carya illinoinensis
CiPaw.07G181800 Carya illinoinensis
CiPaw.08G043800 Carya illinoinensis
ClCG01G008750 Citrullus lanatus
ClCG08G011000 Citrullus lanatus
ClCG10G009200 Citrullus lanatus
ClCG11G015430 Citrullus lanatus
COL.COLO4_15744 Corchorus olitorius
COL.COLO4_16232 Corchorus olitorius
COL.COLO4_16433 Corchorus olitorius
COL.COLO4_29914 Corchorus olitorius
COL.COLO4_29915 Corchorus olitorius
Cpa.g.sc36.115 Carica papaya
Cpa.g.sc42.76 Carica papaya
Cpa.g.sc8.297 Carica papaya
Cre08.g358579 Chlamydomonas reinhardtii
Cre13.g579850 Chlamydomonas reinhardtii
CsaV3_1G022910 Cucumis sativus L.
CsaV3_4G009360 Cucumis sativus L.
CsaV3_4G028660 Cucumis sativus L.
CsaV3_5G024260 Cucumis sativus L.
CSS0008367 Camellia sinensis var. sinensis
CSS0025458 Camellia sinensis var. sinensis
CSS0038108 Camellia sinensis var. sinensis
CSS0044062 Camellia sinensis var. sinensis
CSS0044887 Camellia sinensis var. sinensis
DCAR_008718 Daucus carota
DCAR_009828 Daucus carota
DCAR_013330 Daucus carota
Dinv09039 Davidia involucrata
Dinv12067 Davidia involucrata
Dinv13031 Davidia involucrata
Dinv24199 Davidia involucrata
Dinv44757 Davidia involucrata
Duzib041G0296 Durio zibethinus
Duzib093G0069 Durio zibethinus
Duzib132G0601 Durio zibethinus
Duzib147G1236 Durio zibethinus
Duzib248G1334 Durio zibethinus
Duzib264G0492 Durio zibethinus
ECA236G2532 Erigeron canadensis
ECA240G2352 Erigeron canadensis
ECA246G2229 Erigeron canadensis
EL10Ac1g01252 Beta vulgaris
EL10Ac9g21464 Beta vulgaris
EL10Ac9g22888 Beta vulgaris
Eucgr.F00498 Eucalyptus grandis
Eucgr.G00772 Eucalyptus grandis
Eucgr.K01330 Eucalyptus grandis
FAN02G0523 Fragaria x ananassa
FAN04G0436 Fragaria x ananassa
FAN05G2131 Fragaria x ananassa
FAN08G3351 Fragaria x ananassa
FAN09G2802 Fragaria x ananassa
FAN13G2060 Fragaria x ananassa
FAN14G0991 Fragaria x ananassa
FAN18G3578 Fragaria x ananassa
FvH4_5g37810 Fragaria vesca
FvH4_6g40110 Fragaria vesca
Glyma.05G118500 Glycine max
Glyma.08G073600 Glycine max
Glyma.13G004100 Glycine max
Glyma.13G088200 Glycine max
Glyma.14G171600 Glycine max
Glyma.20G064700 Glycine max
Gohir.A05G228000 Gossypium hirsutum
Gohir.A05G267500 Gossypium hirsutum
Gohir.A05G380300 Gossypium hirsutum
Gohir.A11G060600 Gossypium hirsutum
Gohir.A13G066700 Gossypium hirsutum
Gohir.D04G035300 Gossypium hirsutum
Gohir.D05G230600 Gossypium hirsutum
Gohir.D05G269300 Gossypium hirsutum
Gohir.D11G064700 Gossypium hirsutum
Gohir.D13G054900 Gossypium hirsutum
Gorai.007G069900 Gossypium raimondii
Gorai.009G238700 Gossypium raimondii
Gorai.009G281900 Gossypium raimondii
Gorai.012G039800 Gossypium raimondii
Gorai.013G061900 Gossypium raimondii
GSVIVG01000700001 Vitis vinifera
GSVIVG01000816001 Vitis vinifera
GSVIVG01003078001 Vitis vinifera
GSVIVG01009009001 Vitis vinifera
HanXRQChr03g0066931 Helianthus annuus
HanXRQChr06g0171681 Helianthus annuus
HanXRQChr09g0249601 Helianthus annuus
HanXRQChr11g0338141 Helianthus annuus
HanXRQChr15g0491371 Helianthus annuus
HanXRQChr17g0541131 Helianthus annuus
Haze_10662 Corylus avellana
Haze_10671 Corylus avellana
Haze_14999 Corylus avellana
Haze_15001 Corylus avellana
Hma1.2p1_0120F.1_g057240 Hydrangea macrophylla
Hma1.2p1_0342F.1_g130670 Hydrangea macrophylla
Hma1.2p1_0522F.1_g171580 Hydrangea macrophylla
Hma1.2p1_0583F.1_g182990 Hydrangea macrophylla
Hma1.2p1_0964F.1_g242015 Hydrangea macrophylla
Hma1.2p1_1716F.1_g299150 Hydrangea macrophylla
HPP92_010850 Vanilla planifolia
HPP92_011229 Vanilla planifolia
HPP92_014350 Vanilla planifolia
HPP92_014376 Vanilla planifolia
HPP92_015679 Vanilla planifolia
HPP92_027686 Vanilla planifolia
Hund06392 Selenicereus undatus
Hund24325 Selenicereus undatus
Hund26952 Selenicereus undatus
Lalb_Chr04g0256581 Lupinus albus
Lalb_Chr10g0097731 Lupinus albus
Lalb_Chr10g0102261 Lupinus albus
Lalb_Chr17g0344121 Lupinus albus
Lalb_Chr17g0349371 Lupinus albus
Lj1g0015053 Lotus japonicus
Lj4A106G63 Lonicera japonica
Lj4C721G30 Lonicera japonica
Lj4g0018719 Lotus japonicus
Lj5C240G6 Lonicera japonica
Lj6g0001258 Lotus japonicus
Lj7A380G30 Lonicera japonica
Lsat_1_v5_gn_3_34641 Lactuca sativa
Lsat_1_v5_gn_7_80861 Lactuca sativa
Lsat_1_v5_gn_9_117321 Lactuca sativa
Lsat_1_v5_gn_9_43801 Lactuca sativa
Manes.02G154300 Manihot esculenta
Manes.06G010400 Manihot esculenta
Manes.09G002100 Manihot esculenta
Manes.14G166600 Manihot esculenta
Manes.18G068900 Manihot esculenta
Mapoly0014s0022 Marchantia polymorpha
Mapoly0014s0173 Marchantia polymorpha
MBI02_g36655_MAGBIO Magnolia biondii
MBI05_g32460_MAGBIO Magnolia biondii
MBI18_g28226_MAGBIO Magnolia biondii
MBI19_g28100_MAGBIO Magnolia biondii
MD05G1045400 Malus domestica
MD08G1180300 Malus domestica
MD09G1135200 Malus domestica
MD10G1052300 Malus domestica
MD15G1365600 Malus domestica
MD17G1124200 Malus domestica
Medtr3g081480 Medicago truncatula
Medtr4g094255 Medicago truncatula
Medtr5g062720 Medicago truncatula
MELO3C010426.2 Cucumis melo
MELO3C011363.2 Cucumis melo
MELO3C019021.2 Cucumis melo
MELO3C025124.2 Cucumis melo
Migut.B00616 Erythranthe guttata
Migut.C00010 Erythranthe guttata
Migut.N02835 Erythranthe guttata
Migut.O00442 Erythranthe guttata
Migut.O00754 Erythranthe guttata
MSTRG.1011 Avicennia marina
MSTRG.16577 Avicennia marina
MSTRG.22184 Avicennia marina
MSTRG.24421 Avicennia marina
Nitab4.5_0000675g0020 Nicotiana tabacum
Nitab4.5_0001843g0180 Nicotiana tabacum
Nitab4.5_0001992g0120 Nicotiana tabacum
Nitab4.5_0006378g0020 Nicotiana tabacum
Nitab4.5_0006724g0020 Nicotiana tabacum
Nitab4.5_0008216g0010 Nicotiana tabacum
Nitab4.5_0018824g0010 Nicotiana tabacum
Nn1g05311 Nelumbo nucifera
Nn5g27147 Nelumbo nucifera
Nn5g29068 Nelumbo nucifera
Nn6g34839 Nelumbo nucifera
Nn6g34844 Nelumbo nucifera
Oeu011636.2 Olea europaea
Oeu024545.1 Olea europaea
Oeu047363.4 Olea europaea
Oeu061488.3 Olea europaea
Os03g0321400 Oryza sativa ssp. japonica
Os03g0784400 Oryza sativa ssp. japonica
Os04g0455900 Oryza sativa ssp. japonica
Os05g0490200 Oryza sativa ssp. japonica
Peaxi162Scf00001g00225 Petunia axillaris
Peaxi162Scf00041g00612 Petunia axillaris
Peaxi162Scf00351g00617 Petunia axillaris
PGR004G0865 Punica granatum
PGR042G2593 Punica granatum
PGR042G3984 Punica granatum
PGSC0003DMG400012563 Solanum tuberosum
PGSC0003DMG400028828 Solanum tuberosum
PGSC0003DMG401000927 Solanum tuberosum
Phvul.002G207900 Phaseolus vulgaris
Phvul.006G002400 Phaseolus vulgaris
Phvul.008G172300 Phaseolus vulgaris
Potri.001G206100 Populus trichocarpa
Potri.002G094400 Populus trichocarpa
Potri.003G023500 Populus trichocarpa
Potri.005G168800 Populus trichocarpa
Potri.006G023900 Populus trichocarpa
Potri.016G022800 Populus trichocarpa
Pp3c16_11750 Physcomitrium patens
Pp3c16_11760 Physcomitrium patens
Pp3c1_7080 Physcomitrium patens
Pp3c27_4710 Physcomitrium patens
Pp3c5_2580 Physcomitrium patens
PRCOL_00000720 Prasinoderma coloniale
PRCOL_00003916 Prasinoderma coloniale
PRCOL_00003917 Prasinoderma coloniale
Prupe.1G119300 Prunus persica
Prupe.1G513700 Prunus persica
Prupe.3G191500 Prunus persica
Prupe.8G062600 Prunus persica
Psat2g073440 Pisum sativum
Psat2g073480 Pisum sativum
Psat5g106800 Pisum sativum
Psat7g098520 Pisum sativum
PSO133G0104 Papaver somniferum
PSO210G0726 Papaver somniferum
PSO339G0185 Papaver somniferum
PSO339G2425 Papaver somniferum
PSO384G2556 Papaver somniferum
PSO447G0100 Papaver somniferum
PSO541G1173 Papaver somniferum
PSO541G5003 Papaver somniferum
PSO675G7314 Papaver somniferum
QL04p065252 Quercus lobata
QL05p034133 Quercus lobata
QL12p036242 Quercus lobata
RcHm_v2.0_Chr2g0154741 Rosa chinensis
RcHm_v2.0_Chr5g0055151 Rosa chinensis
RcHm_v2.0_Chr7g0239691 Rosa chinensis
Rhsim05G0108600 Rhododendron simsii
Rhsim06G0084500 Rhododendron simsii
Rhsim07G0172200 Rhododendron simsii
Sabra02G0074400 Salix brachista
Sabra05G0125800 Salix brachista
Sabra06G0017400 Salix brachista
Sabra16G0023300 Salix brachista
Sabra16G0029000 Salix brachista
SalBow2G0196 Salvia bowleyana
SalBow5G4751 Salvia bowleyana
SalBow7G4657 Salvia bowleyana
Sc01g0000290 Simmondsia chinensis
Sc06g0004010 Simmondsia chinensis
Sc08g0003360 Simmondsia chinensis
Sc23g0000090 Simmondsia chinensis
Sed0011493 Sechium edule
Sed0016282 Sechium edule
Sed0016689 Sechium edule
Sed0020295 Sechium edule
Sed0021684 Sechium edule
SEGI_10567 Sequoiadendron giganteum
SEGI_14817 Sequoiadendron giganteum
SEGI_15662 Sequoiadendron giganteum
SEGI_23830 Sequoiadendron giganteum
SEGI_24758 Sequoiadendron giganteum
SGA_v2.0_scaffold241G44207 Striga asiatica
SGA_v2.0_scaffold28G11933 Striga asiatica
SGA_v2.0_scaffold83G26296 Striga asiatica
SHI25451 Sapria himalayana
SHI25452 Sapria himalayana
SHI26839 Sapria himalayana
SMO133G0020 Selaginella moellendorffii
SMO171G0016 Selaginella moellendorffii
Solyc01g105100.3 Solanum lycopersicum
Solyc04g072910.3 Solanum lycopersicum
Solyc07g044810.3 Solanum lycopersicum
Solyc12g006297.1 Solanum lycopersicum
Solyc12g006310.2 Solanum lycopersicum
Sopen01g047640 Solanum pennellii
Sopen04g029090 Solanum pennellii
Sopen07g023370 Solanum pennellii
Sopen12g002270 Solanum pennellii
Sp1g19700 Schrenkiella parvula
Sp1g30590 Schrenkiella parvula
Sp3g20080 Schrenkiella parvula
Sp5g33220 Schrenkiella parvula
TAR376G0170 Trochodendron aralioides
TAR381G1693 Trochodendron aralioides
TAR623G0454 Trochodendron aralioides
TAR627G0892 Trochodendron aralioides
TAR628G1715 Trochodendron aralioides
TAR629G1473 Trochodendron aralioides
THA.LOC104803020 Tarenaya hassleriana
THA.LOC104807166 Tarenaya hassleriana
THA.LOC104808532 Tarenaya hassleriana
THA.LOC104810863 Tarenaya hassleriana
THA.LOC104813122 Tarenaya hassleriana
Thecc.01G164400 Theobroma cacao
Thecc.01G203000 Theobroma cacao
Thecc.01G214200 Theobroma cacao
Thecc.02G140200 Theobroma cacao
Thecc.08G109700 Theobroma cacao
Thhalv10003455m.g Eutrema salsugineum
Thhalv10007894m.g Eutrema salsugineum
Thhalv10018695m.g Eutrema salsugineum
Thhalv10021173m.g Eutrema salsugineum
TPR.G10441 Trifolium pratense
TPR.G31689 Trifolium pratense
TPR.G8269 Trifolium pratense
TPR.G9188 Trifolium pratense
TWI12G0125 Tripterygium wilfordii
TWI34G0068 Tripterygium wilfordii
TWI36G1771 Tripterygium wilfordii
TWI56G0586 Tripterygium wilfordii
TWI59G1474 Tripterygium wilfordii
unitig_21.g20919 Utricularia gibba
unitig_578.g15967 Utricularia gibba
unitig_578.g16176 Utricularia gibba
unitig_747.g21550 Utricularia gibba
unitig_8.g4852 Utricularia gibba
vmacro05093 Vaccinium macrocarpon
vmacro19923 Vaccinium macrocarpon
vmacro19924 Vaccinium macrocarpon
vmacro21237 Vaccinium macrocarpon
vmacro21238 Vaccinium macrocarpon
VMungo0251G1667 Vigna mungo
Zm00001eb015290 Zea mays
Zm00001eb081070 Zea mays
Zm00001eb104240 Zea mays
Zm00001eb149510 Zea mays
Zm00001eb278910 Zea mays
Zm00001eb291250 Zea mays
Zm00001eb352250 Zea mays
Zm00001eb368810 Zea mays

User provided reference genes

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