Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35720 Brassica napus
A05p39010 Brassica napus
A06p17240 Brassica napus
A07p28320 Brassica napus
A08p29030 Brassica napus
A09p20110 Brassica napus
Aa31LG3G2570 Aethionema arabicum
Aa31LG6G9660 Aethionema arabicum
Aa31LG7G5290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3312 Anthoceros agrestis
Actinidia04764 Actinidia chinensis
Actinidia29526 Actinidia chinensis
Actinidia31298 Actinidia chinensis
Actinidia32464 Actinidia chinensis
Ah.05g167950 Amaranthus hybridus
Ah.06g193720 Amaranthus hybridus
Ah.08g211090 Amaranthus hybridus
Ah.15g091220 Amaranthus hybridus
AL1G34250 Arabidopsis lyrata
AL2G36990 Arabidopsis lyrata
AL3G21370 Arabidopsis lyrata
Aqoxy116s004 Aquilegia oxysepala
Aqoxy116s005 Aquilegia oxysepala
Aqoxy1G00987 Aquilegia oxysepala
Aqoxy300s001 Aquilegia oxysepala
Aqoxy5G02097 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5MEL2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.79UAYX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E570TZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q5JGPT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U4C9QK Arachis hypogaea
AT1G21200 Arabidopsis thaliana
AT1G76870 Arabidopsis thaliana
AT3G10040 Arabidopsis thaliana
ATR0605G078 Amborella trichopoda
ATR0772G200 Amborella trichopoda
ATR0820G084 Amborella trichopoda
Atru.chr13.2134 Acer truncatum
Atru.chr6.950 Acer truncatum
Atru.chr8.1670 Acer truncatum
AUR62013578 Chenopodium quinoa
AUR62019276 Chenopodium quinoa
AUR62019278 Chenopodium quinoa
AUR62026711 Chenopodium quinoa
AUR62037901 Chenopodium quinoa
BcaB02g07079 Brassica carinata
BcaB03g11576 Brassica carinata
BcaB03g11577 Brassica carinata
BcaB03g12828 Brassica carinata
BcaB06g29632 Brassica carinata
BcaB07g32110 Brassica carinata
BcaB07g32999 Brassica carinata
BcaC01g04257 Brassica carinata
BcaC01g05381 Brassica carinata
BcaC02g10084 Brassica carinata
BcaC05g26028 Brassica carinata
BcaC06g34879 Brassica carinata
BcaC07g39082 Brassica carinata
BcaC07g39084 Brassica carinata
BcaC08g45507 Brassica carinata
BolC3t16610H Brassica oleracea
BolC4t24859H Brassica oleracea
BolC5t30692H Brassica oleracea
BolC5t34460H Brassica oleracea
BolC6t38305H Brassica oleracea
BolC7t42756H Brassica oleracea
BolC8t49700H Brassica oleracea
BraA03t12746Z Brassica rapa
BraA05t22692Z Brassica rapa
BraA06t24825Z Brassica rapa
BraA07t30469Z Brassica rapa
BraA08t34838Z Brassica rapa
BraA09t37624Z Brassica rapa
C02p47110 Brassica napus
C03p43390 Brassica napus
C04p32960 Brassica napus
C05p19940 Brassica napus
C05p58040 Brassica napus
C06p31760 Brassica napus
C07p21190 Brassica napus
C07p22370 Brassica napus
C08p20670 Brassica napus
CAN.G1702.8 Capsicum annuum
CAN.G472.57 Capsicum annuum
CAN.G575.65 Capsicum annuum
CAN.G824.47 Capsicum annuum
CANSAT11G1593 Cannabis sativa
CANSAT25G0284 Cannabis sativa
CANSAT80G0978 Cannabis sativa
CARHR021650 Cardamine hirsuta
CARHR070380 Cardamine hirsuta
CARHR084540 Cardamine hirsuta
Carub.0001s2063 Capsella rubella
Carub.0003s0914 Capsella rubella
Ca_01290_v3 Cicer arietinum L.
Ca_08954_v3 Cicer arietinum L.
Ca_10690_v3 Cicer arietinum L.
Ca_11609_v3 Cicer arietinum L.
Ca_18818_v3 Cicer arietinum L.
Ca_29664_v3 Cicer arietinum L.
Cc00_g09000 Coffea canephora
Cc00_g31390 Coffea canephora
Cc03_g13070 Coffea canephora
CDE06G0323 Ceratophyllum demersum
CDE06G2517 Ceratophyllum demersum
CDE08G0161 Ceratophyllum demersum
CDE08G1541 Ceratophyllum demersum
CDE10G0624 Ceratophyllum demersum
Cfa009747 Carpinus fangiana
Cfa016509 Carpinus fangiana
Cfa018325 Carpinus fangiana
Ciclev10001142m.g Citrus clementina
Ciclev10003451m.g Citrus clementina
Ciclev10013486m.g Citrus clementina
Ciclev10015189m.g Citrus clementina
CiPaw.05G040900 Carya illinoinensis
CiPaw.09G007000 Carya illinoinensis
CiPaw.10G003900 Carya illinoinensis
CiPaw.13G162800 Carya illinoinensis
CiPaw.15G016600 Carya illinoinensis
CiPaw.16G012600 Carya illinoinensis
ClCG08G006970 Citrullus lanatus
ClCG10G019510 Citrullus lanatus
COL.COLO4_17913 Corchorus olitorius
COL.COLO4_17914 Corchorus olitorius
COL.COLO4_22286 Corchorus olitorius
COL.COLO4_37833 Corchorus olitorius
Cpa.g.sc2145.1 Carica papaya
Cpa.g.sc5.104 Carica papaya
Cpa.g.sc84.71 Carica papaya
CsaV3_1G019710 Cucumis sativus L.
CsaV3_1G019720 Cucumis sativus L.
CsaV3_3G036680 Cucumis sativus L.
CsaV3_4G024170 Cucumis sativus L.
CsaV3_6G005270 Cucumis sativus L.
CSS0001935 Camellia sinensis var. sinensis
CSS0010702 Camellia sinensis var. sinensis
CSS0024822 Camellia sinensis var. sinensis
CSS0032015 Camellia sinensis var. sinensis
CSS0038066 Camellia sinensis var. sinensis
CSS0041375 Camellia sinensis var. sinensis
DCAR_001132 Daucus carota
DCAR_002060 Daucus carota
DCAR_010245 Daucus carota
DCAR_015025 Daucus carota
DCAR_017636 Daucus carota
Dinv09896 Davidia involucrata
Dinv19334 Davidia involucrata
Dinv25858 Davidia involucrata
Dinv35854 Davidia involucrata
Dinv35855 Davidia involucrata
Dinv41088 Davidia involucrata
Duzib093G1958 Durio zibethinus
Duzib106G0290 Durio zibethinus
Duzib116G0275 Durio zibethinus
Duzib128G0532 Durio zibethinus
Duzib132G1202 Durio zibethinus
Duzib168G2306 Durio zibethinus
Duzib170G0804 Durio zibethinus
ECA247G0494 Erigeron canadensis
ECA248G1669 Erigeron canadensis
ECA248G2382 Erigeron canadensis
EL10Ac4g10293 Beta vulgaris
EL10Ac7g16761 Beta vulgaris
Eucgr.A01572 Eucalyptus grandis
Eucgr.F04240 Eucalyptus grandis
Eucgr.J00785 Eucalyptus grandis
FAN02G4281 Fragaria x ananassa
FAN05G1490 Fragaria x ananassa
FAN05G3564 Fragaria x ananassa
FAN09G1812 Fragaria x ananassa
FAN11G2161 Fragaria x ananassa
FAN14G3650 Fragaria x ananassa
FAN15G2182 Fragaria x ananassa
FAN20G0166 Fragaria x ananassa
FAN21G3319 Fragaria x ananassa
FAN24G3548 Fragaria x ananassa
FAN25G0564 Fragaria x ananassa
FAN27G1842 Fragaria x ananassa
FvH4_2g13860 Fragaria vesca
FvH4_3g29090 Fragaria vesca
FvH4_6g17470 Fragaria vesca
Glyma.03G189600 Glycine max
Glyma.10G064900 Glycine max
Glyma.10G225300 Glycine max
Glyma.13G149700 Glycine max
Glyma.13G340600 Glycine max
Glyma.15G033800 Glycine max
Glyma.16G167700 Glycine max
Glyma.19G190000 Glycine max
Glyma.20G166500 Glycine max
Gohir.A01G197800 Gossypium hirsutum
Gohir.A01G210600 Gossypium hirsutum
Gohir.A02G064200 Gossypium hirsutum
Gohir.A04G125900 Gossypium hirsutum
Gohir.A04G126000 Gossypium hirsutum
Gohir.A07G124900 Gossypium hirsutum
Gohir.A09G142500 Gossypium hirsutum
Gohir.D01G188000 Gossypium hirsutum
Gohir.D01G199500 Gossypium hirsutum
Gohir.D02G070100 Gossypium hirsutum
Gohir.D04G170950 Gossypium hirsutum
Gohir.D07G129300 Gossypium hirsutum
Gohir.D09G138600 Gossypium hirsutum
Gorai.001G139700 Gossypium raimondii
Gorai.002G231400 Gossypium raimondii
Gorai.002G243900 Gossypium raimondii
Gorai.005G079200 Gossypium raimondii
Gorai.006G159000 Gossypium raimondii
Gorai.012G159500 Gossypium raimondii
GSVIVG01025297001 Vitis vinifera
GSVIVG01033746001 Vitis vinifera
GSVIVG01034521001 Vitis vinifera
HanXRQChr01g0028121 Helianthus annuus
HanXRQChr02g0040791 Helianthus annuus
HanXRQChr11g0350961 Helianthus annuus
HanXRQChr13g0405941 Helianthus annuus
Haze_17749 Corylus avellana
Haze_19511 Corylus avellana
Haze_23106 Corylus avellana
Haze_23110 Corylus avellana
Hma1.2p1_0027F.1_g017170 Hydrangea macrophylla
Hma1.2p1_0084F.1_g043010 Hydrangea macrophylla
Hma1.2p1_0105F.1_g050750 Hydrangea macrophylla
HPP92_009751 Vanilla planifolia
HPP92_009764 Vanilla planifolia
HPP92_012653 Vanilla planifolia
HPP92_019686 Vanilla planifolia
HPP92_020518 Vanilla planifolia
Lalb_Chr01g0018431 Lupinus albus
Lalb_Chr03g0035281 Lupinus albus
Lalb_Chr06g0161561 Lupinus albus
Lalb_Chr06g0161571 Lupinus albus
Lalb_Chr06g0172121 Lupinus albus
Lalb_Chr19g0130311 Lupinus albus
Lalb_Chr21g0305421 Lupinus albus
Lalb_Chr21g0315361 Lupinus albus
Lalb_Chr22g0352361 Lupinus albus
Lj1g0015637 Lotus japonicus
Lj2C635G6 Lonicera japonica
Lj2g0009900 Lotus japonicus
Lj2P126T14 Lonicera japonica
Lj2P645T9 Lonicera japonica
Lj3g0019147 Lotus japonicus
Lj4P696T15 Lonicera japonica
Lj5C244T4 Lonicera japonica
Lj5C244T5 Lonicera japonica
Lj5g0009442 Lotus japonicus
Lj5g0014548 Lotus japonicus
Lsat_1_v5_gn_1_50761 Lactuca sativa
Lsat_1_v5_gn_1_6421 Lactuca sativa
Lsat_1_v5_gn_1_66180 Lactuca sativa
Lsat_1_v5_gn_9_116661 Lactuca sativa
Manes.02G179001 Manihot esculenta
Manes.06G166200 Manihot esculenta
Manes.08G018600 Manihot esculenta
Manes.09G061200 Manihot esculenta
Manes.14G001700 Manihot esculenta
Manes.18G073699 Manihot esculenta
Manes.18G091000 Manihot esculenta
Manes.18G091500 Manihot esculenta
Mapoly0130s0035 Marchantia polymorpha
MBI04_g13628_MAGBIO Magnolia biondii
MBI04_g28759_MAGBIO Magnolia biondii
MBI12_g01750_MAGBIO Magnolia biondii
MBI17_g12065_MAGBIO Magnolia biondii
MD03G1179000 Malus domestica
MD05G1024300 Malus domestica
MD10G1024800 Malus domestica
MD11G1198200 Malus domestica
MD12G1096800 Malus domestica
MD14G1094300 Malus domestica
Medtr0065s0070 Medicago truncatula
Medtr1g061640 Medicago truncatula
Medtr1g083710 Medicago truncatula
Medtr1g098920 Medicago truncatula
Medtr2g098080 Medicago truncatula
Medtr3g074710 Medicago truncatula
Medtr6g035315 Medicago truncatula
Medtr7g045808 Medicago truncatula
Medtr7g059155 Medicago truncatula
Medtr7g062460 Medicago truncatula
Medtr7g103390 Medicago truncatula
MELO3C008343.2 Cucumis melo
MELO3C009422.2 Cucumis melo
MELO3C014604.2 Cucumis melo
Migut.B00650 Erythranthe guttata
Migut.C01016 Erythranthe guttata
Migut.J00492 Erythranthe guttata
Migut.N03227 Erythranthe guttata
MSTRG.16554 Avicennia marina
MSTRG.19216 Avicennia marina
MSTRG.22374 Avicennia marina
MSTRG.25320 Avicennia marina
MSTRG.26659 Avicennia marina
MSTRG.27830 Avicennia marina
MSTRG.5796 Avicennia marina
Nitab4.5_0000078g0320 Nicotiana tabacum
Nitab4.5_0000165g0090 Nicotiana tabacum
Nitab4.5_0000249g0390 Nicotiana tabacum
Nitab4.5_0000680g0050 Nicotiana tabacum
Nitab4.5_0001294g0030 Nicotiana tabacum
Nitab4.5_0001925g0150 Nicotiana tabacum
Nitab4.5_0002256g0020 Nicotiana tabacum
Nitab4.5_0006164g0030 Nicotiana tabacum
Nitab4.5_0010330g0020 Nicotiana tabacum
Nitab4.5_0010582g0010 Nicotiana tabacum
Nn1g01809 Nelumbo nucifera
Nn1g06095 Nelumbo nucifera
Nn2g13956 Nelumbo nucifera
Nn2g15453 Nelumbo nucifera
Nn3g21147 Nelumbo nucifera
Nn7g36229 Nelumbo nucifera
Nn8g40997 Nelumbo nucifera
Oeu011942.1 Olea europaea
Oeu014496.1 Olea europaea
Oeu018395.1 Olea europaea
Oeu023264.1 Olea europaea
Oeu023842.1 Olea europaea
Oeu025097.1 Olea europaea
Oeu038884.1 Olea europaea
Os01g0318400 Oryza sativa ssp. japonica
Os02g0542400 Oryza sativa ssp. japonica
Os11g0163500 Oryza sativa ssp. japonica
Os12g0163500 Oryza sativa ssp. japonica
Peaxi162Scf00003g00374 Petunia axillaris
Peaxi162Scf00062g00102 Petunia axillaris
Peaxi162Scf00795g00028 Petunia axillaris
Peaxi162Scf01184g00004 Petunia axillaris
PGR004G1417 Punica granatum
PGR044G0786 Punica granatum
PGR119G0638 Punica granatum
PGSC0003DMG400002728 Solanum tuberosum
PGSC0003DMG400023839 Solanum tuberosum
PGSC0003DMG400029747 Solanum tuberosum
Phvul.001G185100 Phaseolus vulgaris
Phvul.004G095500 Phaseolus vulgaris
Phvul.007G079600 Phaseolus vulgaris
Phvul.007G224600 Phaseolus vulgaris
Phvul.L009943 Phaseolus vulgaris
Potri.001G019200 Populus trichocarpa
Potri.002G068700 Populus trichocarpa
Potri.003G204700 Populus trichocarpa
Potri.005G191700 Populus trichocarpa
Potri.006G117500 Populus trichocarpa
Potri.016G096300 Populus trichocarpa
Prupe.4G244300 Prunus persica
Prupe.7G120800 Prunus persica
Prupe.8G028500 Prunus persica
Psat1g104720 Pisum sativum
Psat3g036560 Pisum sativum
Psat5g284880 Pisum sativum
Psat6g077000 Pisum sativum
Psat6g193520 Pisum sativum
PSO017G1773 Papaver somniferum
PSO017G2244 Papaver somniferum
PSO017G3570 Papaver somniferum
PSO017G6175 Papaver somniferum
PSO339G2417 Papaver somniferum
PSO478G0017 Papaver somniferum
PSO801G0203 Papaver somniferum
QL01p005164 Quercus lobata
QL02p023983 Quercus lobata
QL07p040934 Quercus lobata
RcHm_v2.0_Chr3g0471711 Rosa chinensis
RcHm_v2.0_Chr5g0051441 Rosa chinensis
RcHm_v2.0_Chr6g0275551 Rosa chinensis
Rhsim04G0136700 Rhododendron simsii
Rhsim13G0223100 Rhododendron simsii
Sabra01G0013600 Salix brachista
Sabra02G0054000 Salix brachista
Sabra03G0151400 Salix brachista
Sabra05G0146500 Salix brachista
Sabra06G0092400 Salix brachista
Sabra16G0100700 Salix brachista
SalBow3G3162 Salvia bowleyana
SalBow6G6777 Salvia bowleyana
Sc02g0001260 Simmondsia chinensis
Sc09g0000600 Simmondsia chinensis
Sed0005374 Sechium edule
Sed0011174 Sechium edule
Sed0024657 Sechium edule
Sed0028092 Sechium edule
SEGI_08744 Sequoiadendron giganteum
SEGI_13986 Sequoiadendron giganteum
SEGI_15953 Sequoiadendron giganteum
SEGI_38460 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08664 Striga asiatica
SGA_v2.0_scaffold25G11171 Striga asiatica
SGA_v2.0_scaffold40G15434 Striga asiatica
SHI27820 Sapria himalayana
Solyc01g104760.2 Solanum lycopersicum
Solyc09g008830.3 Solanum lycopersicum
Solyc12g100040.2 Solanum lycopersicum
Sopen01g047280 Solanum pennellii
Sopen09g003620 Solanum pennellii
Sopen12g034660 Solanum pennellii
Sp1g18840 Schrenkiella parvula
Sp3g08350 Schrenkiella parvula
TAR381G0535 Trochodendron aralioides
TAR623G1422 Trochodendron aralioides
TAR625G0727 Trochodendron aralioides
TAR628G1484 Trochodendron aralioides
TAR633G2175 Trochodendron aralioides
THA.LOC104811130 Tarenaya hassleriana
THA.LOC104812040 Tarenaya hassleriana
THA.LOC104813711 Tarenaya hassleriana
THA.LOC104816381 Tarenaya hassleriana
THA.LOC104824502 Tarenaya hassleriana
Thecc.02G043400 Theobroma cacao
Thecc.02G043500 Theobroma cacao
Thecc.05G078500 Theobroma cacao
Thecc.08G150700 Theobroma cacao
Thecc.09G229100 Theobroma cacao
Thhalv10010018m.g Eutrema salsugineum
Thhalv10020795m.g Eutrema salsugineum
TPR.G12686 Trifolium pratense
TPR.G31010 Trifolium pratense
TPR.G36700 Trifolium pratense
TPR.G5693 Trifolium pratense
TPR.G6872 Trifolium pratense
TWI13G0014 Tripterygium wilfordii
TWI53G0068 Tripterygium wilfordii
TWI60G0383 Tripterygium wilfordii
TWI74G0398 Tripterygium wilfordii
unitig_26.g9906 Utricularia gibba
unitig_27.g25393 Utricularia gibba
unitig_578.g15774 Utricularia gibba
unitig_744.g24687 Utricularia gibba
unitig_748.g7101 Utricularia gibba
unitig_748.g7703 Utricularia gibba
unitig_749.g13921 Utricularia gibba
vmacro08811 Vaccinium macrocarpon
VMungo0464G0962 Vigna mungo
VMungo0720G0516 Vigna mungo
VMungo0720G1638 Vigna mungo
VMungo1080G0418 Vigna mungo
VMungo1383G2420 Vigna mungo
Zm00001eb092040 Zea mays
Zm00001eb130740 Zea mays
Zm00001eb181760 Zea mays
Zm00001eb202410 Zea mays
Zm00001eb243260 Zea mays
Zm00001eb340550 Zea mays
Zm00001eb407690 Zea mays

User provided reference genes

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