Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42140 Brassica napus
A05p39340 Brassica napus
A05p41860 Brassica napus
A07p21600 Brassica napus
A10p20610 Brassica napus
A10p32730 Brassica napus
A10p32740 Brassica napus
Aa31LG10G8570 Aethionema arabicum
Aa31LG11G10650 Aethionema arabicum
Aa31LG3G2230 Aethionema arabicum
Actinidia19681 Actinidia chinensis
Actinidia19799 Actinidia chinensis
Actinidia23477 Actinidia chinensis
Actinidia24976 Actinidia chinensis
Actinidia40030 Actinidia chinensis
Actinidia40191 Actinidia chinensis
Ah.13g074220 Amaranthus hybridus
Ah.15g092310 Amaranthus hybridus
AL3G16990 Arabidopsis lyrata
AL3G21000 Arabidopsis lyrata
AL5G34330 Arabidopsis lyrata
AL6G12480 Arabidopsis lyrata
AL6G30470 Arabidopsis lyrata
Aqoxy1G01250 Aquilegia oxysepala
Aqoxy2G03272 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0FII68 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.53PAXP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5AU2WJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.67YB7U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8N7HPT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CLU1CW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3JCHZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9KE7R Arachis hypogaea
AT3G06140 Arabidopsis thaliana
AT3G09770 Arabidopsis thaliana
AT3G53410 Arabidopsis thaliana
AT5G03200 Arabidopsis thaliana
AT5G19080 Arabidopsis thaliana
ATR0115G009 Amborella trichopoda
ATR0626G068 Amborella trichopoda
Atru.chr3.3640 Acer truncatum
Atru.chr4.2567 Acer truncatum
Atru.chr8.1874 Acer truncatum
AUR62030090 Chenopodium quinoa
AUR62038215 Chenopodium quinoa
AUR62040363 Chenopodium quinoa
AUR62042285 Chenopodium quinoa
BcaB02g07789 Brassica carinata
BcaB08g36616 Brassica carinata
BcaB08g36618 Brassica carinata
BcaC03g13021 Brassica carinata
BcaC04g18574 Brassica carinata
BcaC04g18616 Brassica carinata
BcaC04g18619 Brassica carinata
BcaC04g18620 Brassica carinata
BcaC05g29483 Brassica carinata
BcaC05g29699 Brassica carinata
BcaC05g30052 Brassica carinata
BcaC06g32041 Brassica carinata
BcaC09g48126 Brassica carinata
BolC1t05433H Brassica oleracea
BolC2t06086H Brassica oleracea
BolC5t34487H Brassica oleracea
BolC5t34769H Brassica oleracea
BolC6t37303H Brassica oleracea
BolC9t58604H Brassica oleracea
BolC9t60089H Brassica oleracea
BraA01t04282Z Brassica rapa
BraA02t04748Z Brassica rapa
BraA05t22716Z Brassica rapa
BraA05t22905Z Brassica rapa
BraA07t29842Z Brassica rapa
BraA10t44123Z Brassica rapa
BraA10t45309Z Brassica rapa
C02p00890 Brassica napus
C05p58350 Brassica napus
C05p61120 Brassica napus
C06p21190 Brassica napus
C09p57320 Brassica napus
C09p57380 Brassica napus
C09p57390 Brassica napus
C09p73570 Brassica napus
CAN.G1132.6 Capsicum annuum
CAN.G1312.1 Capsicum annuum
CAN.G1837.5 Capsicum annuum
CAN.G982.37 Capsicum annuum
CANSAT54G0525 Cannabis sativa
CANSAT54G1340 Cannabis sativa
CANSAT78G2116 Cannabis sativa
CANSAT80G0245 Cannabis sativa
CARHR080650 Cardamine hirsuta
CARHR084210 Cardamine hirsuta
CARHR193910 Cardamine hirsuta
CARHR210150 Cardamine hirsuta
CARHR211310 Cardamine hirsuta
Carub.0003s0557 Capsella rubella
Carub.0003s0886 Capsella rubella
Carub.0005s1997 Capsella rubella
Carub.0006s0198 Capsella rubella
Carub.0006s1740 Capsella rubella
Ca_00642_v3 Cicer arietinum L.
Ca_08842_v3 Cicer arietinum L.
Ca_11465_v3 Cicer arietinum L.
CBR_g8893 Chara braunii
CBR_g8958 Chara braunii
Cc00_g13320 Coffea canephora
Cc06_g03860 Coffea canephora
Cc10_g11660 Coffea canephora
CDE01G0534 Ceratophyllum demersum
CDE02G2924 Ceratophyllum demersum
CDE02G3982 Ceratophyllum demersum
CDE12G0576 Ceratophyllum demersum
CDE12G0801 Ceratophyllum demersum
Cfa011328 Carpinus fangiana
Cfa015584 Carpinus fangiana
Cfa017541 Carpinus fangiana
Ciclev10005143m.g Citrus clementina
Ciclev10011997m.g Citrus clementina
Ciclev10028818m.g Citrus clementina
CiPaw.01G160200 Carya illinoinensis
CiPaw.02G092600 Carya illinoinensis
CiPaw.09G177000 Carya illinoinensis
CiPaw.10G134200 Carya illinoinensis
ClCG05G005430 Citrullus lanatus
ClCG10G020350 Citrullus lanatus
COL.COLO4_13508 Corchorus olitorius
COL.COLO4_21649 Corchorus olitorius
COL.COLO4_27037 Corchorus olitorius
Cpa.g.sc102.1 Carica papaya
Cpa.g.sc16.23 Carica papaya
Cpa.g.sc48.20 Carica papaya
Cpa.g.sc48.21 Carica papaya
Cpa.g.sc48.22 Carica papaya
Cpa.g.sc898.2 Carica papaya
Cre01.g007774 Chlamydomonas reinhardtii
Cre03.g145847 Chlamydomonas reinhardtii
Cre03.g173900 Chlamydomonas reinhardtii
Cre09.g399439 Chlamydomonas reinhardtii
CsaV3_3G013720 Cucumis sativus L.
CsaV3_3G035750 Cucumis sativus L.
CSS0007359 Camellia sinensis var. sinensis
CSS0010679 Camellia sinensis var. sinensis
CSS0014847 Camellia sinensis var. sinensis
CSS0036641 Camellia sinensis var. sinensis
CSS0038137 Camellia sinensis var. sinensis
CSS0045628 Camellia sinensis var. sinensis
CSS0049175 Camellia sinensis var. sinensis
DCAR_009292 Daucus carota
DCAR_014979 Daucus carota
DCAR_017709 Daucus carota
DCAR_024581 Daucus carota
DCAR_024582 Daucus carota
DCAR_027153 Daucus carota
DCAR_030599 Daucus carota
Dinv35750 Davidia involucrata
Dinv37279 Davidia involucrata
Dinv38395 Davidia involucrata
Dinv40264 Davidia involucrata
Dinv44481 Davidia involucrata
Duzib106G0837 Durio zibethinus
Duzib128G0412 Durio zibethinus
Duzib151G0877 Durio zibethinus
Duzib212G0691 Durio zibethinus
ECA233G5697 Erigeron canadensis
ECA234G0476 Erigeron canadensis
ECA238G0993 Erigeron canadensis
EL10Ac3g06362 Beta vulgaris
EL10Ac7g16546 Beta vulgaris
EL10Ac7g16547 Beta vulgaris
Eucgr.H03593 Eucalyptus grandis
Eucgr.H04473 Eucalyptus grandis
Eucgr.J00935 Eucalyptus grandis
Eucgr.K03242 Eucalyptus grandis
FAN02G3851 Fragaria x ananassa
FAN05G0059 Fragaria x ananassa
FAN07G0074 Fragaria x ananassa
FAN09G4561 Fragaria x ananassa
FAN11G0721 Fragaria x ananassa
FAN12G1364 Fragaria x ananassa
FAN14G0663 Fragaria x ananassa
FAN14G2489 Fragaria x ananassa
FAN16G1902 Fragaria x ananassa
FAN17G1430 Fragaria x ananassa
FAN21G3060 Fragaria x ananassa
FAN22G1377 Fragaria x ananassa
FAN25G1551 Fragaria x ananassa
FvH4_3g32531 Fragaria vesca
FvH4_4g14510 Fragaria vesca
FvH4_6g15750 Fragaria vesca
Glyma.03G180500 Glycine max
Glyma.07G257200 Glycine max
Glyma.10G052000 Glycine max
Glyma.13G139400 Glycine max
Glyma.13G208500 Glycine max
Glyma.13G326700 Glycine max
Glyma.15G104300 Glycine max
Glyma.17G016900 Glycine max
Glyma.17G208900 Glycine max
Glyma.19G181100 Glycine max
Gohir.A04G074700 Gossypium hirsutum
Gohir.A08G211700 Gossypium hirsutum
Gohir.A09G054500 Gossypium hirsutum
Gohir.A09G150400 Gossypium hirsutum
Gohir.A11G324460 Gossypium hirsutum
Gohir.D04G113500 Gossypium hirsutum
Gohir.D08G228400 Gossypium hirsutum
Gohir.D09G053500 Gossypium hirsutum
Gohir.D09G146100 Gossypium hirsutum
Gohir.D11G343700 Gossypium hirsutum
Gorai.004G242700 Gossypium raimondii
Gorai.006G053800 Gossypium raimondii
Gorai.006G167300 Gossypium raimondii
Gorai.007G374000 Gossypium raimondii
Gorai.009G418300 Gossypium raimondii
GSVIVG01000020001 Vitis vinifera
GSVIVG01017889001 Vitis vinifera
GSVIVG01025175001 Vitis vinifera
GSVIVG01025674001 Vitis vinifera
HanXRQChr07g0195571 Helianthus annuus
HanXRQChr10g0310411 Helianthus annuus
HanXRQChr13g0399721 Helianthus annuus
HanXRQChr14g0454181 Helianthus annuus
Haze_00960 Corylus avellana
Haze_00961 Corylus avellana
Haze_20608 Corylus avellana
Haze_23860 Corylus avellana
Hma1.2p1_0205F.1_g087530 Hydrangea macrophylla
Hma1.2p1_0614F.1_g189510 Hydrangea macrophylla
Hma1.2p1_1037F.1_g250590 Hydrangea macrophylla
HPP92_000386 Vanilla planifolia
HPP92_012665 Vanilla planifolia
Hund20221 Selenicereus undatus
Lalb_Chr02g0156211 Lupinus albus
Lalb_Chr06g0171501 Lupinus albus
Lalb_Chr13g0304111 Lupinus albus
Lalb_Chr21g0314741 Lupinus albus
Lalb_Chr25g0289141 Lupinus albus
Lj2A111G57 Lonicera japonica
Lj3C980T14 Lonicera japonica
Lj4g0020354 Lotus japonicus
Lj5g0010146 Lotus japonicus
Lj6A565G29 Lonicera japonica
Lj6g0018944 Lotus japonicus
Lsat_1_v5_gn_2_108781 Lactuca sativa
Lsat_1_v5_gn_5_76001 Lactuca sativa
Lsat_1_v5_gn_6_30461 Lactuca sativa
Manes.03G184500 Manihot esculenta
Manes.08G006400 Manihot esculenta
Manes.09G068933 Manihot esculenta
Manes.11G144400 Manihot esculenta
Manes.15G008300 Manihot esculenta
Manes.15G023300 Manihot esculenta
Mapoly0031s0068 Marchantia polymorpha
MBI07_g19317_MAGBIO Magnolia biondii
MBI10_g04882_MAGBIO Magnolia biondii
MBI10_g04883_MAGBIO Magnolia biondii
MBI17_g34454_MAGBIO Magnolia biondii
MCO04G229 Micromonas commoda
MD03G1116400 Malus domestica
MD04G1099100 Malus domestica
MD11G1134600 Malus domestica
MD12G1119700 Malus domestica
MD13G1183800 Malus domestica
MD16G1184200 Malus domestica
Medtr1g064680 Medicago truncatula
Medtr2g022210 Medicago truncatula
Medtr4g117250 Medicago truncatula
Medtr7g101150 Medicago truncatula
MELO3C006565.2 Cucumis melo
MELO3C009335.2 Cucumis melo
Migut.G00266 Erythranthe guttata
Migut.L01679 Erythranthe guttata
Migut.N01943 Erythranthe guttata
Migut.N01945 Erythranthe guttata
MSTRG.10307 Avicennia marina
MSTRG.26711 Avicennia marina
MSTRG.28009 Avicennia marina
MSTRG.3995 Avicennia marina
MSTRG.5736 Avicennia marina
Nitab4.5_0000101g0090 Nicotiana tabacum
Nitab4.5_0000267g0010 Nicotiana tabacum
Nitab4.5_0000267g0030 Nicotiana tabacum
Nitab4.5_0000440g0130 Nicotiana tabacum
Nitab4.5_0001643g0080 Nicotiana tabacum
Nitab4.5_0002031g0110 Nicotiana tabacum
Nitab4.5_0002702g0030 Nicotiana tabacum
Nitab4.5_0002702g0040 Nicotiana tabacum
Nitab4.5_0005150g0040 Nicotiana tabacum
Nn1g02167 Nelumbo nucifera
Nn2g10773 Nelumbo nucifera
Nn2g13084 Nelumbo nucifera
Nn4g26197 Nelumbo nucifera
Oeu001349.1 Olea europaea
Oeu010295.1 Olea europaea
Oeu010296.1 Olea europaea
Oeu014957.1 Olea europaea
Oeu023739.1 Olea europaea
Oeu027982.1 Olea europaea
Oeu043375.1 Olea europaea
Os01g0374900 Oryza sativa ssp. japonica
Os03g0254900 Oryza sativa ssp. japonica
Os05g0397650 Oryza sativa ssp. japonica
Os10g0204100 Oryza sativa ssp. japonica
Peaxi162Scf00037g00122 Petunia axillaris
Peaxi162Scf00182g00009 Petunia axillaris
Peaxi162Scf00196g01023 Petunia axillaris
Peaxi162Scf00311g00116 Petunia axillaris
Peaxi162Scf00488g00924 Petunia axillaris
PGR004G1970 Punica granatum
PGR031G1799 Punica granatum
PGR119G1534 Punica granatum
PGR142G1851 Punica granatum
PGSC0003DMG400001777 Solanum tuberosum
PGSC0003DMG400010474 Solanum tuberosum
PGSC0003DMG400017589 Solanum tuberosum
PGSC0003DMG400028580 Solanum tuberosum
PGSC0003DMG400047186 Solanum tuberosum
Phvul.001G176700 Phaseolus vulgaris
Phvul.006G153500 Phaseolus vulgaris
Phvul.006G153600 Phaseolus vulgaris
Phvul.007G220900 Phaseolus vulgaris
Potri.005G036400 Populus trichocarpa
Potri.006G128700 Populus trichocarpa
Potri.008G202700 Populus trichocarpa
Potri.010G030600 Populus trichocarpa
Potri.013G025400 Populus trichocarpa
Potri.016G089000 Populus trichocarpa
Pp3c15_23950 Physcomitrium patens
Pp3c9_24340 Physcomitrium patens
PRCOL_00000786 Prasinoderma coloniale
PRCOL_00006847 Prasinoderma coloniale
Prupe.1G151600 Prunus persica
Prupe.6G100500 Prunus persica
Prupe.6G237500 Prunus persica
Psat1g183480 Pisum sativum
Psat3g043520 Pisum sativum
Psat4g031640 Pisum sativum
Psat6g068040 Pisum sativum
PSO063G3823 Papaver somniferum
PSO170G2325 Papaver somniferum
PSO170G5627 Papaver somniferum
PSO210G6129 Papaver somniferum
PSO339G3722 Papaver somniferum
PSO339G4939 Papaver somniferum
PSO384G2350 Papaver somniferum
PSO384G4948 Papaver somniferum
PSO407G0118 Papaver somniferum
PSO832G4315 Papaver somniferum
QL01p022373 Quercus lobata
QL06p004200 Quercus lobata
QL07p044627 Quercus lobata
RcHm_v2.0_Chr3g0469461 Rosa chinensis
RcHm_v2.0_Chr4g0418321 Rosa chinensis
RcHm_v2.0_Chr5g0059601 Rosa chinensis
Rhsim04G0147700 Rhododendron simsii
Rhsim04G0206900 Rhododendron simsii
Rhsim05G0143700 Rhododendron simsii
Rhsim05G0182100 Rhododendron simsii
Sabra05G0036900 Salix brachista
Sabra06G0101300 Salix brachista
Sabra08G0158800 Salix brachista
Sabra10G0010900 Salix brachista
Sabra13G0026600 Salix brachista
Sabra16G0094700 Salix brachista
Sabra16G0094800 Salix brachista
SalBow2G1854 Salvia bowleyana
SalBow3G3601 Salvia bowleyana
Sc02g0001860 Simmondsia chinensis
Sc13g0004000 Simmondsia chinensis
Sc20g0005210 Simmondsia chinensis
Sed0002575 Sechium edule
Sed0007533 Sechium edule
Sed0007959 Sechium edule
Sed0023724 Sechium edule
SGA_v2.0_scaffold237G43823 Striga asiatica
SGA_v2.0_scaffold35G14147 Striga asiatica
SGA_v2.0_scaffold39G15364 Striga asiatica
SGA_v2.0_scaffold452G51833 Striga asiatica
SHI00380 Sapria himalayana
SHI24574 Sapria himalayana
SMO146G0199 Selaginella moellendorffii
SMO239G0121 Selaginella moellendorffii
SMO353G0298 Selaginella moellendorffii
Solyc01g080080.3 Solanum lycopersicum
Solyc01g098750.3 Solanum lycopersicum
Solyc04g054680.3 Solanum lycopersicum
Solyc09g007700.3 Solanum lycopersicum
Solyc10g084100.2 Solanum lycopersicum
Solyc10g086080.2 Solanum lycopersicum
Sopen01g031870 Solanum pennellii
Sopen01g042280 Solanum pennellii
Sopen09g002580 Solanum pennellii
Sopen10g033560 Solanum pennellii
Sopen10g035450 Solanum pennellii
Sp3g05090 Schrenkiella parvula
Sp3g08110 Schrenkiella parvula
Sp5g08930 Schrenkiella parvula
Sp6g25300 Schrenkiella parvula
Sp6g39520 Schrenkiella parvula
TAR365G0127 Trochodendron aralioides
TAR623G0558 Trochodendron aralioides
TAR629G0969 Trochodendron aralioides
TAR633G0882 Trochodendron aralioides
TAR636G1817 Trochodendron aralioides
THA.LOC104807008 Tarenaya hassleriana
THA.LOC104816336 Tarenaya hassleriana
THA.LOC104820106 Tarenaya hassleriana
Thecc.04G221800 Theobroma cacao
Thecc.05G058100 Theobroma cacao
Thecc.05G307000 Theobroma cacao
Thhalv10010573m.g Eutrema salsugineum
Thhalv10013842m.g Eutrema salsugineum
Thhalv10020903m.g Eutrema salsugineum
Thhalv10021004m.g Eutrema salsugineum
TPR.G18280 Trifolium pratense
TPR.G20117 Trifolium pratense
TPR.G21209 Trifolium pratense
TPR.G23236 Trifolium pratense
TPR.G30675 Trifolium pratense
TPR.G35282 Trifolium pratense
TPR.G35285 Trifolium pratense
TPR.G35394 Trifolium pratense
TPR.G768 Trifolium pratense
TPR.G769 Trifolium pratense
TWI53G2034 Tripterygium wilfordii
TWI73G0010 Tripterygium wilfordii
TWI74G0180 Tripterygium wilfordii
TWI77G0579 Tripterygium wilfordii
TWI79G1057 Tripterygium wilfordii
unitig_26.g8942 Utricularia gibba
unitig_578.g16389 Utricularia gibba
unitig_8.g4707 Utricularia gibba
vmacro08280 Vaccinium macrocarpon
vmacro08719 Vaccinium macrocarpon
vmacro19637 Vaccinium macrocarpon
vmacro20036 Vaccinium macrocarpon
VMungo0540G0673 Vigna mungo
VMungo0540G1142 Vigna mungo
VMungo0540G2336 Vigna mungo
VMungo0720G2453 Vigna mungo
VMungo1215G0170 Vigna mungo
VMungo1383G1896 Vigna mungo
Zm00001eb011040 Zea mays
Zm00001eb235080 Zea mays
Zm00001eb287460 Zea mays
Zm00001eb398400 Zea mays

User provided reference genes

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