Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p40400 Brassica napus
A05p21030 Brassica napus
A05p25230 Brassica napus
A05p32020 Brassica napus
A05p40890 Brassica napus
A06p39060 Brassica napus
A09p48480 Brassica napus
Aa31LG10G5330 Aethionema arabicum
Aa31LG2G13850 Aethionema arabicum
Aa31LG5G17880 Aethionema arabicum
Aa31LG8G4680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2456 Anthoceros agrestis
Actinidia09457 Actinidia chinensis
Actinidia18137 Actinidia chinensis
Actinidia18881 Actinidia chinensis
Actinidia23769 Actinidia chinensis
Actinidia35141 Actinidia chinensis
Ah.07g201050 Amaranthus hybridus
Ah.08g214820 Amaranthus hybridus
AL1G46240 Arabidopsis lyrata
AL1G55080 Arabidopsis lyrata
AL3G18610 Arabidopsis lyrata
AL3G30960 Arabidopsis lyrata
AL43U10050 Arabidopsis lyrata
AL8G21580 Arabidopsis lyrata
Aqoxy2G03920 Aquilegia oxysepala
Aqoxy2G03922 Aquilegia oxysepala
Aqoxy3G02162 Aquilegia oxysepala
Aqoxy3G04112 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6C0LG0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8GB1FD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CDT3L9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R9FD0N Arachis hypogaea
AT1G32160 Arabidopsis thaliana
AT1G48450 Arabidopsis thaliana
AT3G07310 Arabidopsis thaliana
AT3G17800 Arabidopsis thaliana
AT5G48590 Arabidopsis thaliana
ATR0561G010 Amborella trichopoda
ATR0598G304 Amborella trichopoda
ATR0829G206 Amborella trichopoda
Atru.chr6.1450 Acer truncatum
Atru.chr6.1534 Acer truncatum
Atru.chr9.1605 Acer truncatum
AUR62001155 Chenopodium quinoa
AUR62007359 Chenopodium quinoa
AUR62007360 Chenopodium quinoa
AUR62016521 Chenopodium quinoa
AUR62018628 Chenopodium quinoa
AUR62041597 Chenopodium quinoa
AUR62042458 Chenopodium quinoa
BcaB02g11406 Brassica carinata
BcaB03g12581 Brassica carinata
BcaB03g13761 Brassica carinata
BcaB04g18964 Brassica carinata
BcaB04g21295 Brassica carinata
BcaC01g03731 Brassica carinata
BcaC03g15072 Brassica carinata
BcaC05g27570 Brassica carinata
BcaC05g27922 Brassica carinata
BcaC06g30776 Brassica carinata
BcaC06g30777 Brassica carinata
BcaC06g30778 Brassica carinata
BcaC09g49360 Brassica carinata
BcaNung05882 Brassica carinata
BNapus_Darmor_BZH_scaffold_109p00100 Brassica napus
BolC1t05555H Brassica oleracea
BolC2t08698H Brassica oleracea
BolC3t17201H Brassica oleracea
BolC5t32265H Brassica oleracea
BolC5t32664H Brassica oleracea
BolC5t33590H Brassica oleracea
BolC5t33773H Brassica oleracea
BolC5t34654H Brassica oleracea
BolC7t44448H Brassica oleracea
BraA01t04386Z Brassica rapa
BraA03t13189Z Brassica rapa
BraA03t13192Z Brassica rapa
BraA03t13194Z Brassica rapa
BraA05t21007Z Brassica rapa
BraA05t21399Z Brassica rapa
BraA05t22033Z Brassica rapa
BraA05t22818Z Brassica rapa
BraA06t26819Z Brassica rapa
BraA07t29882Z Brassica rapa
BraA09t40300Z Brassica rapa
BraA09t40301Z Brassica rapa
C03p49200 Brassica napus
C05p35530 Brassica napus
C05p39280 Brassica napus
C05p48540 Brassica napus
C05p59990 Brassica napus
C07p39280 Brassica napus
C08p10950 Brassica napus
C09p45280 Brassica napus
CAN.G173.10 Capsicum annuum
CAN.G173.11 Capsicum annuum
CAN.G181.29 Capsicum annuum
CAN.G181.30 Capsicum annuum
CAN.G33.10 Capsicum annuum
CAN.G637.35 Capsicum annuum
CAN.G773.32 Capsicum annuum
CANSAT01G0063 Cannabis sativa
CANSAT01G1691 Cannabis sativa
CANSAT21G0239 Cannabis sativa
CANSAT80G1939 Cannabis sativa
CARHR031520 Cardamine hirsuta
CARHR038080 Cardamine hirsuta
CARHR081960 Cardamine hirsuta
CARHR093150 Cardamine hirsuta
CARHR291970 Cardamine hirsuta
Carub.0001s3048 Capsella rubella
Carub.0001s3758 Capsella rubella
Carub.0003s0685 Capsella rubella
Carub.0003s1751 Capsella rubella
Carub.0008s0822 Capsella rubella
Ca_07502_v3 Cicer arietinum L.
Ca_14777_v3 Cicer arietinum L.
Ca_17173_v3 Cicer arietinum L.
Ca_23212_v3 Cicer arietinum L.
Ca_25163_v3 Cicer arietinum L.
Ca_25974_v3 Cicer arietinum L.
Cc01_g16470 Coffea canephora
Cc04_g09280 Coffea canephora
Cc08_g03530 Coffea canephora
CDE06G1469 Ceratophyllum demersum
CDE06G1968 Ceratophyllum demersum
CDE07G0576 Ceratophyllum demersum
CDE12G0334 Ceratophyllum demersum
Cfa010394 Carpinus fangiana
Cfa012501 Carpinus fangiana
Cfa020640 Carpinus fangiana
Cfa020643 Carpinus fangiana
Cfa020680 Carpinus fangiana
Ciclev10003247m.g Citrus clementina
Ciclev10020337m.g Citrus clementina
Ciclev10031774m.g Citrus clementina
CiPaw.12G068700 Carya illinoinensis
CiPaw.13G051000 Carya illinoinensis
CiPaw.14G040400 Carya illinoinensis
CiPaw.15G148100 Carya illinoinensis
CiPaw.16G097800 Carya illinoinensis
ClCG04G010430 Citrullus lanatus
ClCG04G012820 Citrullus lanatus
ClCG09G008680 Citrullus lanatus
ClCG09G011610 Citrullus lanatus
COL.COLO4_16119 Corchorus olitorius
COL.COLO4_16933 Corchorus olitorius
COL.COLO4_20592 Corchorus olitorius
Cpa.g.c41588 Carica papaya
Cpa.g.sc3.347 Carica papaya
Cpa.g.sc8.116 Carica papaya
Cre12.g510000 Chlamydomonas reinhardtii
CsaV3_1G007360 Cucumis sativus L.
CsaV3_3G048820 Cucumis sativus L.
CsaV3_7G026300 Cucumis sativus L.
CSS0000378 Camellia sinensis var. sinensis
CSS0001490 Camellia sinensis var. sinensis
CSS0023465 Camellia sinensis var. sinensis
CSS0026067 Camellia sinensis var. sinensis
CSS0030579 Camellia sinensis var. sinensis
CSS0038662 Camellia sinensis var. sinensis
DCAR_004747 Daucus carota
DCAR_011384 Daucus carota
DCAR_015169 Daucus carota
DCAR_028253 Daucus carota
DCAR_028254 Daucus carota
Dinv06974 Davidia involucrata
Dinv09073 Davidia involucrata
Dinv25271 Davidia involucrata
Dinv28836 Davidia involucrata
Dinv30668 Davidia involucrata
Dinv34328 Davidia involucrata
Duzib084G0988 Durio zibethinus
Duzib133G1202 Durio zibethinus
Duzib138G1118 Durio zibethinus
Duzib205G0428 Durio zibethinus
ECA232G0905 Erigeron canadensis
ECA246G4983 Erigeron canadensis
ECA248G0789 Erigeron canadensis
EL10Ac5g12001 Beta vulgaris
EL10Ac7g17944 Beta vulgaris
EL10Ac8g19488 Beta vulgaris
Eucgr.E00224 Eucalyptus grandis
Eucgr.H00558 Eucalyptus grandis
Eucgr.H00754 Eucalyptus grandis
FAN01G1966 Fragaria x ananassa
FAN04G1584 Fragaria x ananassa
FAN04G2509 Fragaria x ananassa
FAN08G2268 Fragaria x ananassa
FAN08G3636 Fragaria x ananassa
FAN13G1384 Fragaria x ananassa
FAN13G1624 Fragaria x ananassa
FAN13G1738 Fragaria x ananassa
FAN15G1183 Fragaria x ananassa
FAN15G1519 Fragaria x ananassa
FAN15G2328 Fragaria x ananassa
FAN18G0265 Fragaria x ananassa
FAN18G4022 Fragaria x ananassa
FAN18G4489 Fragaria x ananassa
FAN24G2984 Fragaria x ananassa
FAN27G3269 Fragaria x ananassa
FvH4_2g18230 Fragaria vesca
FvH4_5g17760 Fragaria vesca
FvH4_5g23190 Fragaria vesca
Glyma.01G012400 Glycine max
Glyma.03G085900 Glycine max
Glyma.05G247700 Glycine max
Glyma.07G106300 Glycine max
Glyma.08G056200 Glycine max
Glyma.08G346900 Glycine max
Glyma.09G171900 Glycine max
Glyma.09G209200 Glycine max
Glyma.16G088400 Glycine max
Glyma.18G158300 Glycine max
Gohir.A03G000031 Gossypium hirsutum
Gohir.A03G072400 Gossypium hirsutum
Gohir.A11G140500 Gossypium hirsutum
Gohir.A12G271200 Gossypium hirsutum
Gohir.D02G119600 Gossypium hirsutum
Gohir.D03G176400 Gossypium hirsutum
Gohir.D11G147000 Gossypium hirsutum
Gohir.D12G271700 Gossypium hirsutum
Gorai.003G185600 Gossypium raimondii
Gorai.005G134400 Gossypium raimondii
Gorai.007G157400 Gossypium raimondii
Gorai.008G292100 Gossypium raimondii
GSVIVG01012909001 Vitis vinifera
GSVIVG01013054001 Vitis vinifera
GSVIVG01019320001 Vitis vinifera
HanXRQChr01g0016301 Helianthus annuus
HanXRQChr02g0039151 Helianthus annuus
HanXRQChr06g0172691 Helianthus annuus
HanXRQChr09g0266621 Helianthus annuus
HanXRQChr17g0538061 Helianthus annuus
Haze_03343 Corylus avellana
Haze_08169 Corylus avellana
Haze_18925 Corylus avellana
Hma1.2p1_0471F.1_g159340 Hydrangea macrophylla
Hma1.2p1_0870F.1_g230910 Hydrangea macrophylla
Hma1.2p1_1234F.1_g269010 Hydrangea macrophylla
Hma1.2p1_3736F.1_g337420 Hydrangea macrophylla
HPP92_010985 Vanilla planifolia
HPP92_020900 Vanilla planifolia
HPP92_023183 Vanilla planifolia
HPP92_024769 Vanilla planifolia
Hund06729 Selenicereus undatus
Hund11172 Selenicereus undatus
Hund18458 Selenicereus undatus
Lalb_Chr05g0221501 Lupinus albus
Lalb_Chr07g0194341 Lupinus albus
Lalb_Chr09g0325411 Lupinus albus
Lalb_Chr09g0330241 Lupinus albus
Lalb_Chr14g0370531 Lupinus albus
Lalb_Chr16g0380981 Lupinus albus
Lalb_Chr16g0380991 Lupinus albus
Lalb_Chr19g0125931 Lupinus albus
Lj1g0017192 Lotus japonicus
Lj2A1121G81 Lonicera japonica
Lj2C230G1 Lonicera japonica
Lj2g0002474 Lotus japonicus
Lj2g0008130 Lotus japonicus
Lj3g0006669 Lotus japonicus
Lj4g0021897 Lotus japonicus
Lj5C163G9 Lonicera japonica
Lj9C415G14 Lonicera japonica
LjContig00484g0014946 Lotus japonicus
Lsat_1_v5_gn_3_19540 Lactuca sativa
Lsat_1_v5_gn_4_131081 Lactuca sativa
Lsat_1_v5_gn_5_177800 Lactuca sativa
Manes.12G050300 Manihot esculenta
Manes.13G051700 Manihot esculenta
Manes.14G173400 Manihot esculenta
Manes.15G192200 Manihot esculenta
Mapoly0118s0013 Marchantia polymorpha
MBI07_g24021_MAGBIO Magnolia biondii
MBI07_g25973_MAGBIO Magnolia biondii
MBI19_g10902_MAGBIO Magnolia biondii
MCO15G513 Micromonas commoda
MD05G1166700 Malus domestica
MD06G1027100 Malus domestica
MD06G1233300 Malus domestica
MD10G1156700 Malus domestica
MD14G1240100 Malus domestica
MD16G1279000 Malus domestica
MD16G1279100 Malus domestica
Medtr5g028020 Medicago truncatula
Medtr6g071465 Medicago truncatula
Medtr7g053530 Medicago truncatula
Medtr8g012420 Medicago truncatula
MELO3C002152.2 Cucumis melo
MELO3C003442.2 Cucumis melo
MELO3C021075.2 Cucumis melo
Migut.A01176 Erythranthe guttata
Migut.D01213 Erythranthe guttata
Migut.D02485 Erythranthe guttata
Migut.D02487 Erythranthe guttata
Migut.I00583 Erythranthe guttata
MSTRG.11239 Avicennia marina
MSTRG.17983 Avicennia marina
MSTRG.20981 Avicennia marina
Nitab4.5_0000179g0070 Nicotiana tabacum
Nitab4.5_0000301g0050 Nicotiana tabacum
Nitab4.5_0000403g0130 Nicotiana tabacum
Nitab4.5_0000430g0070 Nicotiana tabacum
Nitab4.5_0002167g0030 Nicotiana tabacum
Nitab4.5_0002311g0020 Nicotiana tabacum
Nitab4.5_0005269g0010 Nicotiana tabacum
Nitab4.5_0006110g0040 Nicotiana tabacum
Nn1g01863 Nelumbo nucifera
Nn1g08170 Nelumbo nucifera
Nn3g20088 Nelumbo nucifera
Nn4g24494 Nelumbo nucifera
Oeu009070.1 Olea europaea
Oeu031081.1 Olea europaea
Oeu033332.1 Olea europaea
Oeu052492.1 Olea europaea
Oeu058746.1 Olea europaea
Os03g0717900 Oryza sativa ssp. japonica
Os04g0596300 Oryza sativa ssp. japonica
Os11g0456100 Oryza sativa ssp. japonica
Peaxi162Scf00052g00326 Petunia axillaris
Peaxi162Scf00171g00936 Petunia axillaris
Peaxi162Scf00487g00313 Petunia axillaris
Peaxi162Scf00761g00018 Petunia axillaris
PGR042G3697 Punica granatum
PGR083G0882 Punica granatum
PGR083G2564 Punica granatum
PGSC0003DMG400009299 Solanum tuberosum
PGSC0003DMG400020650 Solanum tuberosum
PGSC0003DMG400033689 Solanum tuberosum
PGSC0003DMG400034507 Solanum tuberosum
PGSC0003DMG401008726 Solanum tuberosum
PGSC0003DMG402008726 Solanum tuberosum
Phvul.002G135300 Phaseolus vulgaris
Phvul.002G331900 Phaseolus vulgaris
Phvul.004G147201 Phaseolus vulgaris
Phvul.007G117100 Phaseolus vulgaris
Phvul.008G142100 Phaseolus vulgaris
Phvul.010G023700 Phaseolus vulgaris
Potri.002G247700 Populus trichocarpa
Potri.003G097400 Populus trichocarpa
Potri.012G042400 Populus trichocarpa
Potri.015G031200 Populus trichocarpa
PRCOL_00007005 Prasinoderma coloniale
Prupe.5G027900 Prunus persica
Prupe.5G237700 Prunus persica
Prupe.8G195000 Prunus persica
Psat1g028880 Pisum sativum
Psat2g139800 Pisum sativum
Psat4g204600 Pisum sativum
Psat7g000760 Pisum sativum
PSO017G1923 Papaver somniferum
PSO017G5238 Papaver somniferum
PSO063G5544 Papaver somniferum
PSO478G1158 Papaver somniferum
PSO478G1757 Papaver somniferum
PSO782G0546 Papaver somniferum
QL09p049505 Quercus lobata
QL10p031798 Quercus lobata
QL12p001784 Quercus lobata
RcHm_v2.0_Chr6g0283591 Rosa chinensis
RcHm_v2.0_Chr6g0283601 Rosa chinensis
RcHm_v2.0_Chr7g0177861 Rosa chinensis
RcHm_v2.0_Chr7g0212111 Rosa chinensis
Rhsim01G0250500 Rhododendron simsii
Rhsim07G0132800 Rhododendron simsii
Rhsim12G0137100 Rhododendron simsii
Sabra02G0188500 Salix brachista
Sabra03G0066000 Salix brachista
Sabra12G0029600 Salix brachista
Sabra15G0026100 Salix brachista
SabraUnG0006500 Salix brachista
SalBow5G0235 Salvia bowleyana
SalBow6G3499 Salvia bowleyana
SalBow6G3850 Salvia bowleyana
SalBow6G6498 Salvia bowleyana
Sc05g0005330 Simmondsia chinensis
Sc10g0009030 Simmondsia chinensis
Sc17g0001940 Simmondsia chinensis
Sed0002996 Sechium edule
Sed0003626 Sechium edule
Sed0017663 Sechium edule
Sed0023739 Sechium edule
SEGI_17050 Sequoiadendron giganteum
SEGI_22522 Sequoiadendron giganteum
SGA_v2.0_scaffold156G37279 Striga asiatica
SGA_v2.0_scaffold198G41067 Striga asiatica
SGA_v2.0_scaffold40G15607 Striga asiatica
SGA_v2.0_scaffold72G24120 Striga asiatica
SHI19065 Sapria himalayana
SMO239G0156 Selaginella moellendorffii
SMO353G0405 Selaginella moellendorffii
Solyc03g098000.3 Solanum lycopersicum
Solyc06g007550.1 Solanum lycopersicum
Solyc06g007560.3 Solanum lycopersicum
Solyc08g076090.3 Solanum lycopersicum
Solyc09g057580.4 Solanum lycopersicum
Sopen03g028710 Solanum pennellii
Sopen06g002460 Solanum pennellii
Sopen08g024740 Solanum pennellii
Sopen09g021000 Solanum pennellii
Sp1g27820 Schrenkiella parvula
Sp1g35400 Schrenkiella parvula
Sp2g18950 Schrenkiella parvula
Sp3g06260 Schrenkiella parvula
Sp3g15920 Schrenkiella parvula
TAR374G1331 Trochodendron aralioides
TAR622G0819 Trochodendron aralioides
TAR629G3118 Trochodendron aralioides
THA.LOC104814412 Tarenaya hassleriana
THA.LOC104818981 Tarenaya hassleriana
THA.LOC104820333 Tarenaya hassleriana
THA.LOC104822482 Tarenaya hassleriana
Thecc.01G215800 Theobroma cacao
Thecc.03G063300 Theobroma cacao
Thecc.03G310800 Theobroma cacao
Thhalv10004513m.g Eutrema salsugineum
Thhalv10007794m.g Eutrema salsugineum
Thhalv10011507m.g Eutrema salsugineum
Thhalv10020677m.g Eutrema salsugineum
Thhalv10020977m.g Eutrema salsugineum
TPR.G1462 Trifolium pratense
TPR.G14849 Trifolium pratense
TPR.G16681 Trifolium pratense
TPR.G19453 Trifolium pratense
TWI15G0771 Tripterygium wilfordii
TWI18G1005 Tripterygium wilfordii
TWI60G1721 Tripterygium wilfordii
unitig_22.g6253 Utricularia gibba
unitig_52.g17231 Utricularia gibba
unitig_748.g7544 Utricularia gibba
unitig_8.g3037 Utricularia gibba
vmacro14204 Vaccinium macrocarpon
vmacro14717 Vaccinium macrocarpon
vmacro16400 Vaccinium macrocarpon
VMungo0251G1902 Vigna mungo
VMungo0251G3130 Vigna mungo
VMungo0331G0917 Vigna mungo
VMungo0464G0528 Vigna mungo
VMungo0464G0675 Vigna mungo
VMungo1215G2288 Vigna mungo
VMungo1383G0312 Vigna mungo
Zm00001eb055310 Zea mays
Zm00001eb169990 Zea mays
Zm00001eb216080 Zea mays
Zm00001eb430070 Zea mays

User provided reference genes

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