Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p11170 Brassica napus
A02p38470 Brassica napus
A03p15260 Brassica napus
A03p42780 Brassica napus
A05p26270 Brassica napus
A06p37780 Brassica napus
A09p05130 Brassica napus
A10p01750 Brassica napus
Aa31LG10G12180 Aethionema arabicum
Aa31LG11G8820 Aethionema arabicum
Aa31LG1G9400 Aethionema arabicum
Aa31LG8G9030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2620 Anthoceros agrestis
Actinidia05757 Actinidia chinensis
Actinidia08490 Actinidia chinensis
Actinidia21124 Actinidia chinensis
Actinidia24904 Actinidia chinensis
Actinidia30916 Actinidia chinensis
Ah.02g110920 Amaranthus hybridus
Ah.02g110930 Amaranthus hybridus
Ah.04g154600 Amaranthus hybridus
Ah.06g192710 Amaranthus hybridus
Ah.11g050480 Amaranthus hybridus
Ah.11g050490 Amaranthus hybridus
Ah.11g050510 Amaranthus hybridus
Ah.11g050520 Amaranthus hybridus
AL1G12590 Arabidopsis lyrata
AL3G36800 Arabidopsis lyrata
AL6G40150 Arabidopsis lyrata
AL8G27910 Arabidopsis lyrata
AL8G27920 Arabidopsis lyrata
Aqoxy2G03397 Aquilegia oxysepala
Aqoxy2G03398 Aquilegia oxysepala
Aqoxy2G03399 Aquilegia oxysepala
Aqoxy2G03400 Aquilegia oxysepala
Aqoxy4G00382 Aquilegia oxysepala
Aqoxy5G00463 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.97MZ99 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQ1ST7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LY00QK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SV4Q3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WQF7L9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZIP96M Arachis hypogaea
AT1G03120 Arabidopsis thaliana
AT3G22490 Arabidopsis thaliana
AT3G22500 Arabidopsis thaliana
AT5G27980 Arabidopsis thaliana
AT5G53260 Arabidopsis thaliana
AT5G53270 Arabidopsis thaliana
ATR0697G206 Amborella trichopoda
Atru.chr2.664 Acer truncatum
Atru.chr2.665 Acer truncatum
Atru.chr4.2455 Acer truncatum
Atru.chr4.2456 Acer truncatum
Atru.chr5.1467 Acer truncatum
Atru.ctg752_3.71 Acer truncatum
AUR62000961 Chenopodium quinoa
AUR62005005 Chenopodium quinoa
AUR62028603 Chenopodium quinoa
AUR62028604 Chenopodium quinoa
AUR62028605 Chenopodium quinoa
AUR62028606 Chenopodium quinoa
AUR62032329 Chenopodium quinoa
AUR62032330 Chenopodium quinoa
AUR62032331 Chenopodium quinoa
AUR62032332 Chenopodium quinoa
AUR62034707 Chenopodium quinoa
AUR62043549 Chenopodium quinoa
BcaB01g04238 Brassica carinata
BcaB04g19202 Brassica carinata
BcaB04g19650 Brassica carinata
BcaB05g22028 Brassica carinata
BcaB06g26359 Brassica carinata
BcaB07g34187 Brassica carinata
BcaC01g03443 Brassica carinata
BcaC01g06234 Brassica carinata
BcaC03g14438 Brassica carinata
BcaC03g17766 Brassica carinata
BcaC05g24557 Brassica carinata
BcaC05g28046 Brassica carinata
BcaC05g28062 Brassica carinata
BcaNung04258 Brassica carinata
BolC2t07992H Brassica oleracea
BolC2t11852H Brassica oleracea
BolC3t14191H Brassica oleracea
BolC3t17523H Brassica oleracea
BolC5t28952H Brassica oleracea
BolC5t32806H Brassica oleracea
BolC5t32820H Brassica oleracea
BolC7t44580H Brassica oleracea
BraA02t06180Z Brassica rapa
BraA02t08825Z Brassica rapa
BraA03t10819Z Brassica rapa
BraA03t13425Z Brassica rapa
BraA05t21502Z Brassica rapa
BraA06t26697Z Brassica rapa
BraA09t36152Z Brassica rapa
BraA10t42450Z Brassica rapa
C02p18520 Brassica napus
C02p57790 Brassica napus
C03p17840 Brassica napus
C03p52540 Brassica napus
C05p01730 Brassica napus
C05p40670 Brassica napus
C05p40750 Brassica napus
C07p40450 Brassica napus
CAN.G1094.2 Capsicum annuum
CAN.G1094.3 Capsicum annuum
CAN.G134.177 Capsicum annuum
CANSAT25G1194 Cannabis sativa
CANSAT54G0502 Cannabis sativa
CANSAT78G0859 Cannabis sativa
CANSAT78G1097 Cannabis sativa
CANSAT78G1695 Cannabis sativa
CARHR098390 Cardamine hirsuta
CARHR185690 Cardamine hirsuta
CARHR266310 Cardamine hirsuta
Carub.0001s0226 Capsella rubella
Carub.0003s2265 Capsella rubella
Carub.0003s2266 Capsella rubella
Carub.0006s2546 Capsella rubella
Carub.0008s1344 Capsella rubella
Carub.0008s1345 Capsella rubella
Ca_03978_v3 Cicer arietinum L.
Ca_09746_v3 Cicer arietinum L.
Ca_10065_v3 Cicer arietinum L.
Ca_10890_v3 Cicer arietinum L.
Ca_30335_v3 Cicer arietinum L.
Cc01_g19330 Coffea canephora
Cc02_g31360 Coffea canephora
Cc02_g31370 Coffea canephora
Cc03_g03860 Coffea canephora
Cc04_g16680 Coffea canephora
CDE06G1836 Ceratophyllum demersum
CDE07G0447 Ceratophyllum demersum
Cfa006162 Carpinus fangiana
Cfa011162 Carpinus fangiana
Cfa015655 Carpinus fangiana
Cfa015658 Carpinus fangiana
Ciclev10003643m.g Citrus clementina
Ciclev10005469m.g Citrus clementina
Ciclev10005699m.g Citrus clementina
Ciclev10023775m.g Citrus clementina
CiPaw.01G166900 Carya illinoinensis
CiPaw.08G178500 Carya illinoinensis
ClCG03G016270 Citrullus lanatus
ClCG05G005140 Citrullus lanatus
ClCG06G006260 Citrullus lanatus
ClCG09G007190 Citrullus lanatus
COL.COLO4_00364 Corchorus olitorius
COL.COLO4_02882 Corchorus olitorius
COL.COLO4_09067 Corchorus olitorius
COL.COLO4_09068 Corchorus olitorius
COL.COLO4_09069 Corchorus olitorius
COL.COLO4_21486 Corchorus olitorius
Cpa.g.c34050.2 Carica papaya
Cpa.g.sc487.3 Carica papaya
Cpa.g.sc58.99 Carica papaya
CsaV3_1G039680 Cucumis sativus L.
CsaV3_3G013280 Cucumis sativus L.
CsaV3_7G022470 Cucumis sativus L.
CsaV3_7G027980 Cucumis sativus L.
CSS0028469 Camellia sinensis var. sinensis
CSS0049031 Camellia sinensis var. sinensis
DCAR_002725 Daucus carota
DCAR_012490 Daucus carota
DCAR_012491 Daucus carota
DCAR_012492 Daucus carota
DCAR_018428 Daucus carota
DCAR_029731 Daucus carota
Dinv05120 Davidia involucrata
Dinv13998 Davidia involucrata
Dinv32916 Davidia involucrata
Duzib106G0162 Durio zibethinus
Duzib133G0162 Durio zibethinus
Duzib133G0381 Durio zibethinus
Duzib133G0529 Durio zibethinus
Duzib133G0992 Durio zibethinus
Duzib138G0469 Durio zibethinus
Duzib211G0116 Durio zibethinus
ECA233G3715 Erigeron canadensis
ECA236G3600 Erigeron canadensis
ECA238G0406 Erigeron canadensis
EL10Ac3g06496 Beta vulgaris
EL10Ac4g08682 Beta vulgaris
EL10Ac4g09199 Beta vulgaris
EL10Ac5g10546 Beta vulgaris
EL10Ac5g10547 Beta vulgaris
EL10Ac5g10548 Beta vulgaris
EL10Ac5g10550 Beta vulgaris
EL10Ac5g10551 Beta vulgaris
Eucgr.B01083 Eucalyptus grandis
Eucgr.B01084 Eucalyptus grandis
Eucgr.B01734 Eucalyptus grandis
Eucgr.H01465 Eucalyptus grandis
Eucgr.H03461 Eucalyptus grandis
Eucgr.H04398 Eucalyptus grandis
Eucgr.L02495 Eucalyptus grandis
FAN02G1160 Fragaria x ananassa
FAN05G1041 Fragaria x ananassa
FAN05G2049 Fragaria x ananassa
FAN05G2903 Fragaria x ananassa
FAN09G1667 Fragaria x ananassa
FAN14G0297 Fragaria x ananassa
FAN14G4510 Fragaria x ananassa
FAN15G1717 Fragaria x ananassa
FAN17G0753 Fragaria x ananassa
FAN20G2068 Fragaria x ananassa
FAN24G0444 Fragaria x ananassa
FvH4_2g23300 Fragaria vesca
FvH4_4g15690 Fragaria vesca
FvH4_6g03840 Fragaria vesca
FvH4_6g03841 Fragaria vesca
Glyma.10G027600 Glycine max
Glyma.10G159400 Glycine max
Glyma.10G247500 Glycine max
Glyma.11G158394 Glycine max
Glyma.20G147500 Glycine max
Glyma.20G147600 Glycine max
Glyma.20G229300 Glycine max
Gohir.A02G032400 Gossypium hirsutum
Gohir.A08G065550 Gossypium hirsutum
Gohir.A11G123800 Gossypium hirsutum
Gohir.A11G123900 Gossypium hirsutum
Gohir.A11G124000 Gossypium hirsutum
Gohir.A11G298600 Gossypium hirsutum
Gohir.A13G105966 Gossypium hirsutum
Gohir.D02G039100 Gossypium hirsutum
Gohir.D08G074100 Gossypium hirsutum
Gohir.D08G074200 Gossypium hirsutum
Gohir.D11G129000 Gossypium hirsutum
Gohir.D11G129100 Gossypium hirsutum
Gohir.D11G129200 Gossypium hirsutum
Gohir.D11G313400 Gossypium hirsutum
Gohir.D13G108700 Gossypium hirsutum
Gorai.004G078500 Gossypium raimondii
Gorai.004G078600 Gossypium raimondii
Gorai.005G043200 Gossypium raimondii
Gorai.007G138000 Gossypium raimondii
Gorai.007G138100 Gossypium raimondii
Gorai.007G138200 Gossypium raimondii
Gorai.007G344600 Gossypium raimondii
Gorai.013G122200 Gossypium raimondii
GSVIVG01001170001 Vitis vinifera
GSVIVG01017985001 Vitis vinifera
GSVIVG01021881001 Vitis vinifera
HanXRQChr06g0170021 Helianthus annuus
HanXRQChr07g0204441 Helianthus annuus
HanXRQChr15g0471601 Helianthus annuus
Haze_00875 Corylus avellana
Haze_00890 Corylus avellana
Haze_04683 Corylus avellana
Haze_27754 Corylus avellana
Hma1.2p1_0083F.1_g042710 Hydrangea macrophylla
Hma1.2p1_0745F.1_g212090 Hydrangea macrophylla
HPP92_024839 Vanilla planifolia
HPP92_026621 Vanilla planifolia
Hund06995 Selenicereus undatus
Hund30256 Selenicereus undatus
Hund30257 Selenicereus undatus
Hund30578 Selenicereus undatus
Hund30579 Selenicereus undatus
Lalb_Chr01g0020101 Lupinus albus
Lalb_Chr02g0142651 Lupinus albus
Lalb_Chr02g0148601 Lupinus albus
Lalb_Chr04g0263781 Lupinus albus
Lalb_Chr06g0160651 Lupinus albus
Lalb_Chr06g0162901 Lupinus albus
Lalb_Chr21g0310851 Lupinus albus
Lalb_Chr25g0282621 Lupinus albus
Lalb_Chr25g0282631 Lupinus albus
Lj1A48T55 Lonicera japonica
Lj3g0014684 Lotus japonicus
Lj5g0004213 Lotus japonicus
Lj5g0024152 Lotus japonicus
Lj5g0026903 Lotus japonicus
Lj6C608T6 Lonicera japonica
Lj9A672T96 Lonicera japonica
Lsat_1_v5_gn_2_67041 Lactuca sativa
Lsat_1_v5_gn_8_25740 Lactuca sativa
Lsat_1_v5_gn_8_56641 Lactuca sativa
Lsat_1_v5_gn_9_6420 Lactuca sativa
Manes.01G206400 Manihot esculenta
Manes.03G177900 Manihot esculenta
Manes.05G078100 Manihot esculenta
Manes.05G078200 Manihot esculenta
Manes.08G126900 Manihot esculenta
Manes.09G157500 Manihot esculenta
Mapoly0057s0004 Marchantia polymorpha
Mapoly0084s0071 Marchantia polymorpha
MD03G1262400 Malus domestica
MD04G1217900 Malus domestica
MD11G1283100 Malus domestica
MD12G1235300 Malus domestica
MD13G1194000 Malus domestica
Medtr1g072090 Medicago truncatula
Medtr1g081760 Medicago truncatula
Medtr1g103620 Medicago truncatula
Medtr2g076220 Medicago truncatula
Medtr2g076230 Medicago truncatula
Medtr3g034660 Medicago truncatula
MELO3C006530.2 Cucumis melo
MELO3C012653.2 Cucumis melo
MELO3C015395.2 Cucumis melo
MELO3C015816.2 Cucumis melo
Migut.D00316 Erythranthe guttata
Migut.G00343 Erythranthe guttata
Migut.N02042 Erythranthe guttata
Migut.O00514 Erythranthe guttata
Migut.O00561 Erythranthe guttata
MSTRG.20440 Avicennia marina
MSTRG.9979 Avicennia marina
Nitab4.5_0000316g0020 Nicotiana tabacum
Nitab4.5_0000316g0030 Nicotiana tabacum
Nitab4.5_0000332g0120 Nicotiana tabacum
Nitab4.5_0001342g0040 Nicotiana tabacum
Nitab4.5_0001342g0060 Nicotiana tabacum
Nitab4.5_0002361g0210 Nicotiana tabacum
Nitab4.5_0002840g0100 Nicotiana tabacum
Nitab4.5_0003617g0020 Nicotiana tabacum
Nitab4.5_0017718g0010 Nicotiana tabacum
Nn1g02335 Nelumbo nucifera
Nn1g02338 Nelumbo nucifera
Nn4g22721 Nelumbo nucifera
Nn4g26333 Nelumbo nucifera
Nn4g26334 Nelumbo nucifera
Oeu023737.1 Olea europaea
Oeu025738.1 Olea europaea
Oeu036553.1 Olea europaea
Oeu043368.1 Olea europaea
Oeu044186.1 Olea europaea
Os03g0159600 Oryza sativa ssp. japonica
Os03g0747400 Oryza sativa ssp. japonica
Os03g0747500 Oryza sativa ssp. japonica
Os06g0341300 Oryza sativa ssp. japonica
Os12g0470000 Oryza sativa ssp. japonica
Os12g0626500 Oryza sativa ssp. japonica
Peaxi162Scf00000g03514 Petunia axillaris
Peaxi162Scf00092g00718 Petunia axillaris
Peaxi162Scf00092g00719 Petunia axillaris
Peaxi162Scf00225g00130 Petunia axillaris
PGR004G0405 Punica granatum
PGR004G2060 Punica granatum
PGR044G2270 Punica granatum
PGR083G0514 Punica granatum
PGR119G0024 Punica granatum
PGR119G2410 Punica granatum
PGR142G3008 Punica granatum
PGSC0003DMG400019328 Solanum tuberosum
PGSC0003DMG400022470 Solanum tuberosum
Phvul.005G035800 Phaseolus vulgaris
Phvul.007G057900 Phaseolus vulgaris
Phvul.007G173100 Phaseolus vulgaris
Phvul.007G184800 Phaseolus vulgaris
Potri.005G048000 Populus trichocarpa
Pp3c25_10310 Physcomitrium patens
Pp3c5_27600 Physcomitrium patens
Pp3c6_200 Physcomitrium patens
Prupe.1G014800 Prunus persica
Prupe.6G337900 Prunus persica
Prupe.8G238700 Prunus persica
Psat0s1925g0040 Pisum sativum
Psat0s1925g0080 Pisum sativum
Psat0s3046g0040 Pisum sativum
Psat0s3046g0080 Pisum sativum
Psat5g237480 Pisum sativum
Psat5g237520 Pisum sativum
Psat5g237600 Pisum sativum
Psat6g147840 Pisum sativum
PSO210G2311 Papaver somniferum
PSO210G2642 Papaver somniferum
PSO384G4231 Papaver somniferum
PSO761G0119 Papaver somniferum
PSO832G1920 Papaver somniferum
QL03p022333 Quercus lobata
QL06p002138 Quercus lobata
QL06p002187 Quercus lobata
QL06p002189 Quercus lobata
QL08p006189 Quercus lobata
QL12p021204 Quercus lobata
QL12p021206 Quercus lobata
RcHm_v2.0_Chr3g0452411 Rosa chinensis
RcHm_v2.0_Chr4g0416111 Rosa chinensis
RcHm_v2.0_Chr6g0290701 Rosa chinensis
Rhsim01G0273700 Rhododendron simsii
Rhsim02G0025600 Rhododendron simsii
Sabra05G0043400 Salix brachista
Sabra10G0055800 Salix brachista
SalBow2G1460 Salvia bowleyana
SalBow3G4184 Salvia bowleyana
SalBow4G1641 Salvia bowleyana
SalBow6G4346 Salvia bowleyana
Sc13g0004460 Simmondsia chinensis
Sc13g0006510 Simmondsia chinensis
Sc17g0001370 Simmondsia chinensis
Sc17g0001390 Simmondsia chinensis
Sed0002124 Sechium edule
Sed0003127 Sechium edule
Sed0010763 Sechium edule
Sed0021363 Sechium edule
SEGI_06641 Sequoiadendron giganteum
SEGI_08823 Sequoiadendron giganteum
SEGI_17582 Sequoiadendron giganteum
SEGI_18482 Sequoiadendron giganteum
SEGI_30133 Sequoiadendron giganteum
SEGI_34788 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40965 Striga asiatica
SGA_v2.0_scaffold80G25925 Striga asiatica
SMO351G0321 Selaginella moellendorffii
SMO358G0420 Selaginella moellendorffii
SMO367G0678 Selaginella moellendorffii
Solyc01g097960.3 Solanum lycopersicum
Solyc09g065360.4 Solanum lycopersicum
Solyc09g082100.3 Solanum lycopersicum
Solyc09g082110.4 Solanum lycopersicum
Sopen01g041540 Solanum pennellii
Sopen09g027130 Solanum pennellii
Sopen09g030980 Solanum pennellii
Sopen09g030990 Solanum pennellii
Sp1g02130 Schrenkiella parvula
Sp2g20330 Schrenkiella parvula
Sp3g20260 Schrenkiella parvula
Sp6g15420 Schrenkiella parvula
TAR365G0016 Trochodendron aralioides
THA.LOC104801237 Tarenaya hassleriana
THA.LOC104801566 Tarenaya hassleriana
THA.LOC104802234 Tarenaya hassleriana
THA.LOC104822517 Tarenaya hassleriana
THA.LOC104825994 Tarenaya hassleriana
Thecc.01G275800 Theobroma cacao
Thecc.01G276000 Theobroma cacao
Thecc.04G232800 Theobroma cacao
Thecc.05G290500 Theobroma cacao
Thhalv10004958m.g Eutrema salsugineum
Thhalv10015357m.g Eutrema salsugineum
Thhalv10021345m.g Eutrema salsugineum
TPR.G11160 Trifolium pratense
TPR.G13946 Trifolium pratense
TPR.G27578 Trifolium pratense
TPR.G9120 Trifolium pratense
TWI09G0348 Tripterygium wilfordii
TWI56G0065 Tripterygium wilfordii
unitig_0.g125 Utricularia gibba
unitig_0.g128 Utricularia gibba
unitig_0.g2456 Utricularia gibba
unitig_41.g31652 Utricularia gibba
unitig_899.g14836 Utricularia gibba
unitig_899.g15578 Utricularia gibba
vmacro14913 Vaccinium macrocarpon
VMungo0720G0001 Vigna mungo
VMungo0720G1707 Vigna mungo
VMungo0720G2799 Vigna mungo
VMungo1080G1604 Vigna mungo
Zm00001eb004470 Zea mays
Zm00001eb047600 Zea mays
Zm00001eb057120 Zea mays
Zm00001eb057130 Zea mays
Zm00001eb213850 Zea mays
Zm00001eb245530 Zea mays
Zm00001eb245540 Zea mays

User provided reference genes

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