Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p10470 Brassica napus
A09p02320 Brassica napus
A09p33680 Brassica napus
A10p01920 Brassica napus
Aa31LG1G9200 Aethionema arabicum
Aa31LG5G2550 Aethionema arabicum
Aa31LG9G15340 Aethionema arabicum
Actinidia00072 Actinidia chinensis
Actinidia03385 Actinidia chinensis
Actinidia23452 Actinidia chinensis
Actinidia25953 Actinidia chinensis
Actinidia40210 Actinidia chinensis
Ah.12g054570 Amaranthus hybridus
Ah.13g077820 Amaranthus hybridus
AL1G12890 Arabidopsis lyrata
AL1G46780 Arabidopsis lyrata
AL4G31360 Arabidopsis lyrata
AL6G49930 Arabidopsis lyrata
Aqoxy2G03184 Aquilegia oxysepala
Aqoxy3G02446 Aquilegia oxysepala
Aqoxy5G00567 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.099TXP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2K35VF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5XY2RS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AR7ULQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4XMTJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5SQ1T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QC7G13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R5XDVK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SWT1V1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WDEP49 Arachis hypogaea
AT1G03365 Arabidopsis thaliana
AT1G32530 Arabidopsis thaliana
AT2G35330 Arabidopsis thaliana
AT4G03000 Arabidopsis thaliana
ATR0049G028 Amborella trichopoda
ATR0626G193 Amborella trichopoda
Atru.chr12.1153 Acer truncatum
Atru.chr12.1154 Acer truncatum
Atru.chr4.2703 Acer truncatum
Atru.chr5.1325 Acer truncatum
Atru.chr6.1746 Acer truncatum
Atru.chr6.1748 Acer truncatum
Atru.chr6.1749 Acer truncatum
AUR62007241 Chenopodium quinoa
AUR62018530 Chenopodium quinoa
AUR62018759 Chenopodium quinoa
AUR62020888 Chenopodium quinoa
BcaB01g01213 Brassica carinata
BcaB01g01991 Brassica carinata
BcaB02g09439 Brassica carinata
BcaB02g09445 Brassica carinata
BcaB02g09446 Brassica carinata
BcaB02g09450 Brassica carinata
BcaB02g09451 Brassica carinata
BcaB02g09455 Brassica carinata
BcaB02g09456 Brassica carinata
BcaB02g09460 Brassica carinata
BcaB02g10239 Brassica carinata
BcaB03g13724 Brassica carinata
BcaB03g13956 Brassica carinata
BcaB07g32948 Brassica carinata
BcaC02g11634 Brassica carinata
BcaC02g11639 Brassica carinata
BcaC03g16192 Brassica carinata
BcaC05g24535 Brassica carinata
BcaC05g24536 Brassica carinata
BcaC05g27291 Brassica carinata
BcaC05g27846 Brassica carinata
BolC2t09989H Brassica oleracea
BolC4t22931H Brassica oleracea
BolC5t28967H Brassica oleracea
BolC5t31923H Brassica oleracea
BolC5t32580H Brassica oleracea
BolC9t53174H Brassica oleracea
BraA05t19985Z Brassica rapa
BraA09t35881Z Brassica rapa
BraA09t38917Z Brassica rapa
BraA10t42465Z Brassica rapa
C02p39740 Brassica napus
C02p39750 Brassica napus
C04p12870 Brassica napus
C05p01860 Brassica napus
C05p31970 Brassica napus
C05p38450 Brassica napus
C09p02430 Brassica napus
CAN.G1443.8 Capsicum annuum
CAN.G1443.9 Capsicum annuum
CAN.G1659.2 Capsicum annuum
CAN.G895.15 Capsicum annuum
CANSAT01G0461 Cannabis sativa
CARHR002740 Cardamine hirsuta
CARHR031980 Cardamine hirsuta
CARHR129480 Cardamine hirsuta
CARHR230030 Cardamine hirsuta
CARHR251390 Cardamine hirsuta
Carub.0001s0249 Capsella rubella
Carub.0001s3094 Capsella rubella
Carub.0004s1702 Capsella rubella
Carub.0006s3405 Capsella rubella
Ca_00588_v3 Cicer arietinum L.
Ca_10393_v3 Cicer arietinum L.
Ca_22065_v3 Cicer arietinum L.
Cc00_g20210 Coffea canephora
Cc03_g02740 Coffea canephora
Cc08_g02460 Coffea canephora
CDE02G0560 Ceratophyllum demersum
CDE06G1440 Ceratophyllum demersum
CDE08G0136 Ceratophyllum demersum
CDE12G0286 Ceratophyllum demersum
Cfa006077 Carpinus fangiana
Cfa010989 Carpinus fangiana
Cfa012414 Carpinus fangiana
Ciclev10004269m.g Citrus clementina
Ciclev10018843m.g Citrus clementina
Ciclev10030828m.g Citrus clementina
CiPaw.01G156700 Carya illinoinensis
CiPaw.02G089400 Carya illinoinensis
CiPaw.07G096400 Carya illinoinensis
CiPaw.11G091600 Carya illinoinensis
CiPaw.12G062100 Carya illinoinensis
CiPaw.13G018900 Carya illinoinensis
ClCG05G005580 Citrullus lanatus
ClCG10G001770 Citrullus lanatus
COL.COLO4_09145 Corchorus olitorius
COL.COLO4_13962 Corchorus olitorius
COL.COLO4_17067 Corchorus olitorius
Cpa.g.sc16.73 Carica papaya
Cpa.g.sc2673.1 Carica papaya
Cpa.g.sc665.2 Carica papaya
Cpa.g.sc9.133 Carica papaya
CsaV3_3G001870 Cucumis sativus L.
CsaV3_3G013920 Cucumis sativus L.
CSS0009970 Camellia sinensis var. sinensis
CSS0024345 Camellia sinensis var. sinensis
CSS0026712 Camellia sinensis var. sinensis
CSS0031674 Camellia sinensis var. sinensis
CSS0039848 Camellia sinensis var. sinensis
CSS0044588 Camellia sinensis var. sinensis
DCAR_002763 Daucus carota
DCAR_023682 Daucus carota
DCAR_027130 Daucus carota
Dinv04938 Davidia involucrata
Dinv28936 Davidia involucrata
Dinv32972 Davidia involucrata
Dinv32973 Davidia involucrata
Dinv38349 Davidia involucrata
Dinv38350 Davidia involucrata
Duzib052G1169 Durio zibethinus
Duzib084G0022 Durio zibethinus
Duzib151G0634 Durio zibethinus
Duzib205G0119 Durio zibethinus
ECA232G1637 Erigeron canadensis
ECA233G3905 Erigeron canadensis
ECA236G3531 Erigeron canadensis
ECA240G0341 Erigeron canadensis
ECA246G2931 Erigeron canadensis
EL10Ac3g07432 Beta vulgaris
EL10Ac5g12173 Beta vulgaris
Eucgr.D02184 Eucalyptus grandis
Eucgr.E00293 Eucalyptus grandis
Eucgr.H03641 Eucalyptus grandis
FAN04G3086 Fragaria x ananassa
FAN07G0666 Fragaria x ananassa
FAN08G0193 Fragaria x ananassa
FAN12G1926 Fragaria x ananassa
FAN12G3583 Fragaria x ananassa
FAN13G3282 Fragaria x ananassa
FAN15G1197 Fragaria x ananassa
FAN17G2250 Fragaria x ananassa
FAN18G0885 Fragaria x ananassa
FAN20G0897 Fragaria x ananassa
FAN22G0914 Fragaria x ananassa
FAN24G2124 Fragaria x ananassa
FAN27G1621 Fragaria x ananassa
FvH4_2g24221 Fragaria vesca
FvH4_4g16660 Fragaria vesca
FvH4_5g21710 Fragaria vesca
Glyma.02G150400 Glycine max
Glyma.05G112600 Glycine max
Glyma.07G253800 Glycine max
Glyma.11G042600 Glycine max
Glyma.13G212200 Glycine max
Glyma.15G100500 Glycine max
Glyma.17G020500 Glycine max
Glyma.17G154400 Glycine max
Gohir.A02G044704 Gossypium hirsutum
Gohir.A03G001900 Gossypium hirsutum
Gohir.A09G232200 Gossypium hirsutum
Gohir.A12G006800 Gossypium hirsutum
Gohir.A12G209300 Gossypium hirsutum
Gohir.D02G050800 Gossypium hirsutum
Gohir.D03G170400 Gossypium hirsutum
Gohir.D09G233300 Gossypium hirsutum
Gohir.D12G006200 Gossypium hirsutum
Gohir.D12G212000 Gossypium hirsutum
Gorai.003G180700 Gossypium raimondii
Gorai.005G056100 Gossypium raimondii
Gorai.006G256200 Gossypium raimondii
Gorai.008G006200 Gossypium raimondii
Gorai.008G227600 Gossypium raimondii
GSVIVG01013185001 Vitis vinifera
HanXRQChr06g0164011 Helianthus annuus
HanXRQChr06g0167351 Helianthus annuus
HanXRQChr06g0174311 Helianthus annuus
HanXRQChr08g0227591 Helianthus annuus
Haze_01010 Corylus avellana
Haze_02946 Corylus avellana
Haze_04774 Corylus avellana
Haze_08262 Corylus avellana
Hma1.2p1_0585F.1_g183640 Hydrangea macrophylla
Hma1.2p1_0643F.1_g194490 Hydrangea macrophylla
Hma1.2p1_0991F.1_g244975 Hydrangea macrophylla
Hma1.2p1_2318F.1_g319770 Hydrangea macrophylla
Hma1.2p1_2785F.1_g328450 Hydrangea macrophylla
Hma1.2p1_2785F.1_g328470 Hydrangea macrophylla
HPP92_007703 Vanilla planifolia
HPP92_007704 Vanilla planifolia
HPP92_027726 Vanilla planifolia
HPP92_028473 Vanilla planifolia
HPP92_028474 Vanilla planifolia
Hund14420 Selenicereus undatus
Hund19022 Selenicereus undatus
Hund25332 Selenicereus undatus
Lalb_Chr02g0142931 Lupinus albus
Lalb_Chr05g0213991 Lupinus albus
Lalb_Chr06g0163191 Lupinus albus
Lalb_Chr07g0177491 Lupinus albus
Lalb_Chr09g0323871 Lupinus albus
Lalb_Chr09g0329481 Lupinus albus
Lalb_Chr12g0196361 Lupinus albus
Lalb_Chr13g0304001 Lupinus albus
Lalb_Chr15g0087171 Lupinus albus
Lalb_Chr16g0386061 Lupinus albus
Lj1A42T61 Lonicera japonica
Lj2A242T74 Lonicera japonica
Lj3A806T49 Lonicera japonica
Lj4g0005654 Lotus japonicus
Lj4g0020023 Lotus japonicus
Lj5g0028215 Lotus japonicus
Lj6C665T9 Lonicera japonica
Lj6g0024018 Lotus japonicus
Lj8A292T30 Lonicera japonica
Lj8A292T32 Lonicera japonica
Lj8C291T15 Lonicera japonica
Lj8C291T16 Lonicera japonica
Lj9A48T13 Lonicera japonica
Lj9A79T11 Lonicera japonica
Lsat_1_v5_gn_0_45380 Lactuca sativa
Lsat_1_v5_gn_2_80700 Lactuca sativa
Lsat_1_v5_gn_3_16741 Lactuca sativa
Lsat_1_v5_gn_3_27260 Lactuca sativa
Lsat_1_v5_gn_3_27281 Lactuca sativa
Lsat_1_v5_gn_6_87960 Lactuca sativa
Lsat_1_v5_gn_8_55580 Lactuca sativa
Manes.01G211400 Manihot esculenta
Manes.03G188200 Manihot esculenta
Manes.15G020100 Manihot esculenta
Manes.15G169400 Manihot esculenta
Manes.17G014100 Manihot esculenta
Mapoly0042s0028 Marchantia polymorpha
MBI17_g12080_MAGBIO Magnolia biondii
MBI19_g34709_MAGBIO Magnolia biondii
MD03G1272000 Malus domestica
MD06G1032100 Malus domestica
MD11G1292600 Malus domestica
MD13G1177600 Malus domestica
MD16G1179600 Malus domestica
Medtr1g012335 Medicago truncatula
Medtr1g089740 Medicago truncatula
Medtr2g020870 Medicago truncatula
Medtr4g098560 Medicago truncatula
Medtr4g114950 Medicago truncatula
MELO3C006584.2 Cucumis melo
MELO3C013861.2 Cucumis melo
Migut.A00780 Erythranthe guttata
Migut.B01457 Erythranthe guttata
Migut.B01459 Erythranthe guttata
Migut.C00074 Erythranthe guttata
Migut.C00075 Erythranthe guttata
Migut.G00238 Erythranthe guttata
Migut.G00283 Erythranthe guttata
Migut.J01302 Erythranthe guttata
Migut.N00704 Erythranthe guttata
Migut.N00706 Erythranthe guttata
Migut.N02135 Erythranthe guttata
Migut.N02144 Erythranthe guttata
Migut.N02167 Erythranthe guttata
MSTRG.10029 Avicennia marina
MSTRG.11994 Avicennia marina
MSTRG.17431 Avicennia marina
MSTRG.25595 Avicennia marina
MSTRG.3972 Avicennia marina
Nitab4.5_0000059g0170 Nicotiana tabacum
Nitab4.5_0000295g0160 Nicotiana tabacum
Nitab4.5_0000535g0020 Nicotiana tabacum
Nitab4.5_0000804g0050 Nicotiana tabacum
Nitab4.5_0001323g0120 Nicotiana tabacum
Nitab4.5_0002731g0020 Nicotiana tabacum
Nitab4.5_0002927g0010 Nicotiana tabacum
Nitab4.5_0004238g0010 Nicotiana tabacum
Nitab4.5_0007324g0030 Nicotiana tabacum
Nn1g00569 Nelumbo nucifera
Nn3g21182 Nelumbo nucifera
Oeu001443.1 Olea europaea
Oeu011182.2 Olea europaea
Oeu026085.1 Olea europaea
Oeu026086.1 Olea europaea
Oeu029293.3 Olea europaea
Oeu044812.1 Olea europaea
Oeu049548.1 Olea europaea
Os05g0141500 Oryza sativa ssp. japonica
Os09g0371700 Oryza sativa ssp. japonica
Peaxi162Scf00095g00415 Petunia axillaris
Peaxi162Scf00102g00519 Petunia axillaris
Peaxi162Scf00161g01639 Petunia axillaris
Peaxi162Scf00695g00516 Petunia axillaris
Peaxi162Scf00941g00006 Petunia axillaris
PGR031G0600 Punica granatum
PGR031G1014 Punica granatum
PGSC0003DMG400003810 Solanum tuberosum
PGSC0003DMG400003811 Solanum tuberosum
PGSC0003DMG400010409 Solanum tuberosum
PGSC0003DMG400020519 Solanum tuberosum
PGSC0003DMG400028940 Solanum tuberosum
PGSC0003DMG400032108 Solanum tuberosum
PGSC0003DMG400036602 Solanum tuberosum
Phvul.002G006400 Phaseolus vulgaris
Phvul.003G098100 Phaseolus vulgaris
Phvul.003G229800 Phaseolus vulgaris
Phvul.006G158500 Phaseolus vulgaris
Phvul.007G168300 Phaseolus vulgaris
Potri.001G144200 Populus trichocarpa
Potri.003G090000 Populus trichocarpa
Potri.008G198300 Populus trichocarpa
Potri.010G027900 Populus trichocarpa
Pp3c25_14470 Physcomitrium patens
Prupe.5G040000 Prunus persica
Prupe.8G248200 Prunus persica
Psat0s1893g0040 Pisum sativum
Psat1g185680 Pisum sativum
Psat4g079320 Pisum sativum
PSO063G7676 Papaver somniferum
PSO210G1685 Papaver somniferum
PSO782G0194 Papaver somniferum
PSO832G0117 Papaver somniferum
QL04p024800 Quercus lobata
QL06p006206 Quercus lobata
QL12p006175 Quercus lobata
QL12p023040 Quercus lobata
QL93p0279_0032 Quercus lobata
RcHm_v2.0_Chr4g0420121 Rosa chinensis
RcHm_v2.0_Chr6g0292011 Rosa chinensis
RcHm_v2.0_Chr7g0209211 Rosa chinensis
Rhsim02G0016800 Rhododendron simsii
Rhsim04G0212500 Rhododendron simsii
Rhsim04G0212600 Rhododendron simsii
Rhsim04G0212800 Rhododendron simsii
Rhsim11G0013300 Rhododendron simsii
Rhsim13G0020900 Rhododendron simsii
Sabra01G0112600 Salix brachista
Sabra03G0060000 Salix brachista
Sabra08G0162100 Salix brachista
Sabra10G0012800 Salix brachista
SalBow6G0084 Salvia bowleyana
Sc07g0008760 Simmondsia chinensis
Sc19g0004750 Simmondsia chinensis
Sc22g0001470 Simmondsia chinensis
Sc25g0004540 Simmondsia chinensis
Sed0008192 Sechium edule
Sed0026328 Sechium edule
SEGI_04144 Sequoiadendron giganteum
SEGI_37274 Sequoiadendron giganteum
SGA_v2.0_scaffold142G35642 Striga asiatica
SGA_v2.0_scaffold172G39042 Striga asiatica
SGA_v2.0_scaffold21G09527 Striga asiatica
SGA_v2.0_scaffold21G09529 Striga asiatica
SGA_v2.0_scaffold253G45130 Striga asiatica
SGA_v2.0_scaffold36G14374 Striga asiatica
SGA_v2.0_scaffold57G20297 Striga asiatica
SGA_v2.0_scaffold96G28953 Striga asiatica
SGA_v2.0_scaffold98G29420 Striga asiatica
SGA_v2.0_scaffold98G29422 Striga asiatica
SMO367G1072 Selaginella moellendorffii
Solyc01g080430.4 Solanum lycopersicum
Solyc06g008900.4 Solanum lycopersicum
Solyc08g006980.3 Solanum lycopersicum
Solyc08g016350.1 Solanum lycopersicum
Solyc08g016360.1 Solanum lycopersicum
Solyc08g016370.1 Solanum lycopersicum
Solyc08g077100.3 Solanum lycopersicum
Solyc09g074120.3 Solanum lycopersicum
Solyc09g074130.3 Solanum lycopersicum
Solyc09g074140.3 Solanum lycopersicum
Solyc09g074150.3 Solanum lycopersicum
Solyc09g074160.1 Solanum lycopersicum
Solyc09g074170.3 Solanum lycopersicum
Solyc09g074190.2 Solanum lycopersicum
Solyc09g074200.3 Solanum lycopersicum
Solyc10g050580.1 Solanum lycopersicum
Solyc10g050590.1 Solanum lycopersicum
Solyc10g050600.1 Solanum lycopersicum
Solyc10g050610.1 Solanum lycopersicum
Solyc10g050630.1 Solanum lycopersicum
Sopen01g032240 Solanum pennellii
Sopen06g003650 Solanum pennellii
Sopen08g002950 Solanum pennellii
Sopen08g006690 Solanum pennellii
Sopen08g025680 Solanum pennellii
Sopen09g028940 Solanum pennellii
Sopen09g028950 Solanum pennellii
Sopen09g028960 Solanum pennellii
Sopen09g028990 Solanum pennellii
Sopen09g029000 Solanum pennellii
Sp1g02370 Schrenkiella parvula
Sp1g28370 Schrenkiella parvula
Sp4g17530 Schrenkiella parvula
Sp6g03040 Schrenkiella parvula
TAR362G1042 Trochodendron aralioides
TAR629G2684 Trochodendron aralioides
TAR636G0131 Trochodendron aralioides
TAR636G0159 Trochodendron aralioides
TAR636G2290 Trochodendron aralioides
TAR636G2306 Trochodendron aralioides
TAR636G2541 Trochodendron aralioides
THA.LOC104801211 Tarenaya hassleriana
THA.LOC104807960 Tarenaya hassleriana
THA.LOC104812745 Tarenaya hassleriana
THA.LOC104826005 Tarenaya hassleriana
Thecc.01G286200 Theobroma cacao
Thecc.03G230600 Theobroma cacao
Thecc.04G272500 Theobroma cacao
Thhalv10006805m.g Eutrema salsugineum
Thhalv10006944m.g Eutrema salsugineum
Thhalv10010162m.g Eutrema salsugineum
Thhalv10016336m.g Eutrema salsugineum
Thhalv10028432m.g Eutrema salsugineum
TPR.G13294 Trifolium pratense
TPR.G18019 Trifolium pratense
TPR.G28656 Trifolium pratense
TPR.G6908 Trifolium pratense
TWI09G1350 Tripterygium wilfordii
TWI60G0354 Tripterygium wilfordii
TWI73G0410 Tripterygium wilfordii
unitig_26.g9701 Utricularia gibba
unitig_32.g10790 Utricularia gibba
unitig_748.g8359 Utricularia gibba
unitig_748.g8360 Utricularia gibba
vmacro00340 Vaccinium macrocarpon
vmacro02535 Vaccinium macrocarpon
vmacro08240 Vaccinium macrocarpon
vmacro15288 Vaccinium macrocarpon
VMungo0251G1991 Vigna mungo
VMungo0540G1937 Vigna mungo
VMungo0720G1788 Vigna mungo
VMungo1215G1117 Vigna mungo
VMungo1215G1600 Vigna mungo
Zm00001eb094680 Zea mays
Zm00001eb104480 Zea mays
Zm00001eb311380 Zea mays
Zm00001eb320610 Zea mays

User provided reference genes

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