Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p12580 Brassica napus
A03p16520 Brassica napus
A03p25330 Brassica napus
A05p05670 Brassica napus
A07p18830 Brassica napus
A08p28180 Brassica napus
A09p23850 Brassica napus
A10p00210 Brassica napus
Aa31LG1G11180 Aethionema arabicum
Aa31LG3G7400 Aethionema arabicum
Aa31sc209G100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2273 Anthoceros agrestis
Actinidia08896 Actinidia chinensis
Actinidia10799 Actinidia chinensis
Actinidia12727 Actinidia chinensis
Actinidia25377 Actinidia chinensis
Actinidia32922 Actinidia chinensis
Actinidia32923 Actinidia chinensis
Actinidia33442 Actinidia chinensis
Actinidia36833 Actinidia chinensis
Actinidia38291 Actinidia chinensis
Ah.02g114680 Amaranthus hybridus
Ah.05g176080 Amaranthus hybridus
Ah.11g041900 Amaranthus hybridus
Ah.11g046540 Amaranthus hybridus
AL1G10490 Arabidopsis lyrata
AL3G43340 Arabidopsis lyrata
AL4G44910 Arabidopsis lyrata
AL8G25090 Arabidopsis lyrata
Aqoxy1G04183 Aquilegia oxysepala
Aqoxy3G01748 Aquilegia oxysepala
Aqoxy7G00446 Aquilegia oxysepala
Aqoxy7G01109 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.831W35 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S1D52P Arachis hypogaea
AT1G01830 Arabidopsis thaliana
AT2G05810 Arabidopsis thaliana
AT2G45720 Arabidopsis thaliana
AT5G50900 Arabidopsis thaliana
ATR0178G015 Amborella trichopoda
ATR0582G114 Amborella trichopoda
ATR0757G140 Amborella trichopoda
Atru.chr5.408 Acer truncatum
Atru.chr6.1892 Acer truncatum
Atru.chr6.3257 Acer truncatum
Atru.chr6.3258 Acer truncatum
AUR62022741 Chenopodium quinoa
AUR62029532 Chenopodium quinoa
AUR62034787 Chenopodium quinoa
BcaB01g03256 Brassica carinata
BcaB02g09017 Brassica carinata
BcaB03g13618 Brassica carinata
BcaB03g13620 Brassica carinata
BcaB03g13621 Brassica carinata
BcaB05g24024 Brassica carinata
BcaC01g05109 Brassica carinata
BcaC01g06057 Brassica carinata
BcaC02g12191 Brassica carinata
BcaC03g14631 Brassica carinata
BcaC05g25107 Brassica carinata
BcaC05g27296 Brassica carinata
BolC2t08206H Brassica oleracea
BolC3t14326H Brassica oleracea
BolC3t15373H Brassica oleracea
BolC4t22285H Brassica oleracea
BolC4t27180H Brassica oleracea
BolC5t28813H Brassica oleracea
BolC5t34563H Brassica oleracea
BolC6t39515H Brassica oleracea
BraA02t06316Z Brassica rapa
BraA03t10939Z Brassica rapa
BraA03t11739Z Brassica rapa
BraA05t19538Z Brassica rapa
BraA06t25034Z Brassica rapa
BraA10t42300Z Brassica rapa
C02p20640 Brassica napus
C03p19450 Brassica napus
C03p30230 Brassica napus
C03p30240 Brassica napus
C04p06630 Brassica napus
C04p56540 Brassica napus
C05p00240 Brassica napus
CAN.G170.48 Capsicum annuum
CAN.G637.60 Capsicum annuum
CAN.G668.12 Capsicum annuum
CAN.G735.1 Capsicum annuum
CANSAT56G1460 Cannabis sativa
CANSAT64G2058 Cannabis sativa
CARHR000500 Cardamine hirsuta
CARHR103390 Cardamine hirsuta
CARHR140960 Cardamine hirsuta
CARHR257360 Cardamine hirsuta
Carub.0001s0038 Capsella rubella
Carub.0003s2704 Capsella rubella
Carub.0004s2838 Capsella rubella
Carub.0008s1090 Capsella rubella
Ca_07863_v3 Cicer arietinum L.
Ca_16078_v3 Cicer arietinum L.
Ca_23764_v3 Cicer arietinum L.
Cc02_g37270 Coffea canephora
Cc04_g09470 Coffea canephora
Cc05_g02940 Coffea canephora
CDE02G1166 Ceratophyllum demersum
CDE04G1606 Ceratophyllum demersum
CDE04G2305 Ceratophyllum demersum
CDE05G1128 Ceratophyllum demersum
CDE05G1548 Ceratophyllum demersum
CDE05G2390 Ceratophyllum demersum
CDE07G0722 Ceratophyllum demersum
CDE11G0907 Ceratophyllum demersum
Cfa001848 Carpinus fangiana
Cfa014318 Carpinus fangiana
Cfa018730 Carpinus fangiana
Cfa019182 Carpinus fangiana
Ciclev10014736m.g Citrus clementina
Ciclev10019530m.g Citrus clementina
Ciclev10031112m.g Citrus clementina
CiPaw.01G054100 Carya illinoinensis
CiPaw.02G025000 Carya illinoinensis
CiPaw.03G155100 Carya illinoinensis
CiPaw.12G001800 Carya illinoinensis
ClCG01G009870 Citrullus lanatus
ClCG06G000080 Citrullus lanatus
ClCG09G011210 Citrullus lanatus
COL.COLO4_12620 Corchorus olitorius
COL.COLO4_16683 Corchorus olitorius
COL.COLO4_21880 Corchorus olitorius
Cpa.g.sc132.23 Carica papaya
Cpa.g.sc18.193 Carica papaya
Cpa.g.sc4.117 Carica papaya
CsaV3_1G045910 Cucumis sativus L.
CsaV3_3G009280 Cucumis sativus L.
CsaV3_6G005820 Cucumis sativus L.
CsaV3_6G037750 Cucumis sativus L.
CSS0001436 Camellia sinensis var. sinensis
CSS0006224 Camellia sinensis var. sinensis
CSS0007451 Camellia sinensis var. sinensis
CSS0026727 Camellia sinensis var. sinensis
CSS0027248 Camellia sinensis var. sinensis
DCAR_006908 Daucus carota
DCAR_008589 Daucus carota
DCAR_016005 Daucus carota
DCAR_016359 Daucus carota
DCAR_021139 Daucus carota
DCAR_025168 Daucus carota
Dinv01682 Davidia involucrata
Dinv02290 Davidia involucrata
Dinv07688 Davidia involucrata
Dinv08717 Davidia involucrata
Dinv08718 Davidia involucrata
Dinv11215 Davidia involucrata
Dinv23197 Davidia involucrata
Dinv32426 Davidia involucrata
Dinv43760 Davidia involucrata
Duzib084G0402 Durio zibethinus
Duzib133G0533 Durio zibethinus
Duzib133G1567 Durio zibethinus
Duzib138G0129 Durio zibethinus
Duzib138G0708 Durio zibethinus
Duzib205G0014 Durio zibethinus
ECA232G2864 Erigeron canadensis
ECA234G1829 Erigeron canadensis
ECA236G2381 Erigeron canadensis
ECA240G4808 Erigeron canadensis
ECA247G0908 Erigeron canadensis
EL10Ac1g00981 Beta vulgaris
EL10Ac5g11336 Beta vulgaris
Eucgr.D02240 Eucalyptus grandis
Eucgr.E00215 Eucalyptus grandis
Eucgr.K00753 Eucalyptus grandis
Eucgr.K02202 Eucalyptus grandis
FAN01G2298 Fragaria x ananassa
FAN02G0691 Fragaria x ananassa
FAN03G2727 Fragaria x ananassa
FAN04G0867 Fragaria x ananassa
FAN05G2749 Fragaria x ananassa
FAN06G3807 Fragaria x ananassa
FAN06G3943 Fragaria x ananassa
FAN08G3029 Fragaria x ananassa
FAN10G0565 Fragaria x ananassa
FAN10G3637 Fragaria x ananassa
FAN11G2541 Fragaria x ananassa
FAN13G1444 Fragaria x ananassa
FAN14G2477 Fragaria x ananassa
FAN18G4028 Fragaria x ananassa
FAN20G2098 Fragaria x ananassa
FvH4_1g21781 Fragaria vesca
FvH4_3g23060 Fragaria vesca
FvH4_5g09100 Fragaria vesca
FvH4_6g42120 Fragaria vesca
FvH4_7g13170 Fragaria vesca
Glyma.03G017100 Glycine max
Glyma.04G199500 Glycine max
Glyma.06G166000 Glycine max
Glyma.07G078200 Glycine max
Glyma.09G264600 Glycine max
Glyma.18G227400 Glycine max
Gohir.A07G047900 Gossypium hirsutum
Gohir.A09G247700 Gossypium hirsutum
Gohir.A11G085100 Gossypium hirsutum
Gohir.A11G152900 Gossypium hirsutum
Gohir.A12G103900 Gossypium hirsutum
Gohir.D07G052200 Gossypium hirsutum
Gohir.D07G193900 Gossypium hirsutum
Gohir.D08G150800 Gossypium hirsutum
Gohir.D09G248500 Gossypium hirsutum
Gohir.D11G089200 Gossypium hirsutum
Gohir.D11G159700 Gossypium hirsutum
Gohir.D12G107350 Gossypium hirsutum
Gorai.001G055200 Gossypium raimondii
Gorai.001G217000 Gossypium raimondii
Gorai.004G156500 Gossypium raimondii
Gorai.006G272800 Gossypium raimondii
Gorai.007G095200 Gossypium raimondii
Gorai.007G170300 Gossypium raimondii
Gorai.008G116900 Gossypium raimondii
GSVIVG01008619001 Vitis vinifera
GSVIVG01027519001 Vitis vinifera
GSVIVG01030505001 Vitis vinifera
HanXRQChr02g0059861 Helianthus annuus
HanXRQChr03g0093551 Helianthus annuus
HanXRQChr04g0121801 Helianthus annuus
HanXRQChr09g0273601 Helianthus annuus
HanXRQChr10g0305911 Helianthus annuus
HanXRQChr12g0379771 Helianthus annuus
Haze_07122 Corylus avellana
Haze_12766 Corylus avellana
Haze_15221 Corylus avellana
Hma1.2p1_0046F.1_g027600 Hydrangea macrophylla
Hma1.2p1_0168F.1_g074170 Hydrangea macrophylla
Hma1.2p1_0177F.1_g078080 Hydrangea macrophylla
Hma1.2p1_0398F.1_g143880 Hydrangea macrophylla
Hma1.2p1_0507F.1_g168650 Hydrangea macrophylla
HPP92_015046 Vanilla planifolia
HPP92_020101 Vanilla planifolia
HPP92_021878 Vanilla planifolia
HPP92_022031 Vanilla planifolia
Hund27323 Selenicereus undatus
Lalb_Chr10g0097491 Lupinus albus
Lalb_Chr11g0069311 Lupinus albus
Lalb_Chr19g0127111 Lupinus albus
Lalb_Chr23g0272951 Lupinus albus
Lj1g0001437 Lotus japonicus
Lj1g0009283 Lotus japonicus
Lj3g0011074 Lotus japonicus
Lj5C91T4 Lonicera japonica
Lj7C519T6 Lonicera japonica
Lj8E130T2 Lonicera japonica
Lj9A484T65 Lonicera japonica
Lj9E577T0 Lonicera japonica
Lj9P577T25 Lonicera japonica
Lsat_1_v5_gn_1_32360 Lactuca sativa
Lsat_1_v5_gn_3_135740 Lactuca sativa
Lsat_1_v5_gn_4_84081 Lactuca sativa
Lsat_1_v5_gn_5_124581 Lactuca sativa
Lsat_1_v5_gn_7_5921 Lactuca sativa
Lsat_1_v5_gn_9_105840 Lactuca sativa
Manes.01G262000 Manihot esculenta
Manes.05G039900 Manihot esculenta
Manes.06G124800 Manihot esculenta
Manes.12G069600 Manihot esculenta
Manes.14G046700 Manihot esculenta
Mapoly0059s0060 Marchantia polymorpha
MBI04_g35780_MAGBIO Magnolia biondii
MBI11_g14284_MAGBIO Magnolia biondii
MBI12_g31186_MAGBIO Magnolia biondii
MBI15_g10495_MAGBIO Magnolia biondii
MBI15_g33086_MAGBIO Magnolia biondii
MBI16_g26183_MAGBIO Magnolia biondii
MD01G1051300 Malus domestica
MD06G1133700 Malus domestica
MD09G1114400 Malus domestica
MD14G1150000 Malus domestica
MD17G1106100 Malus domestica
Medtr3g098730 Medicago truncatula
Medtr5g092900 Medicago truncatula
Medtr7g076220 Medicago truncatula
Medtr8g032570 Medicago truncatula
MELO3C002901.2 Cucumis melo
MELO3C006148.2 Cucumis melo
MELO3C014434.2 Cucumis melo
MELO3C021709.2 Cucumis melo
MELO3C022530.2 Cucumis melo
MELO3C033774.2 Cucumis melo
MELO3C035651.2 Cucumis melo
Migut.B01692 Erythranthe guttata
Migut.H01239 Erythranthe guttata
Migut.M00424 Erythranthe guttata
Migut.O00351 Erythranthe guttata
MSTRG.11257 Avicennia marina
MSTRG.14135 Avicennia marina
MSTRG.14860 Avicennia marina
MSTRG.20795 Avicennia marina
MSTRG.4626 Avicennia marina
Nitab4.5_0000482g0290 Nicotiana tabacum
Nitab4.5_0001451g0010 Nicotiana tabacum
Nitab4.5_0001825g0010 Nicotiana tabacum
Nitab4.5_0002718g0010 Nicotiana tabacum
Nitab4.5_0004550g0060 Nicotiana tabacum
Nitab4.5_0005008g0030 Nicotiana tabacum
Nn1g01358 Nelumbo nucifera
Nn2g10462 Nelumbo nucifera
Nn3g16332 Nelumbo nucifera
Oeu003101.1 Olea europaea
Oeu017976.1 Olea europaea
Oeu019019.1 Olea europaea
Oeu024410.1 Olea europaea
Oeu024412.1 Olea europaea
Oeu025068.2 Olea europaea
Oeu058113.1 Olea europaea
Oeu058606.2 Olea europaea
Oeu059233.1 Olea europaea
Os03g0116900 Oryza sativa ssp. japonica
Os09g0135800 Oryza sativa ssp. japonica
Os10g0522601 Oryza sativa ssp. japonica
Os11g0515000 Oryza sativa ssp. japonica
Peaxi162Scf00021g00064 Petunia axillaris
Peaxi162Scf00171g00113 Petunia axillaris
Peaxi162Scf00921g00217 Petunia axillaris
PGR031G0682 Punica granatum
PGR042G2831 Punica granatum
PGR044G0706 Punica granatum
PGR142G3726 Punica granatum
PGSC0003DMG400000663 Solanum tuberosum
PGSC0003DMG400002873 Solanum tuberosum
PGSC0003DMG400012021 Solanum tuberosum
PGSC0003DMG400027764 Solanum tuberosum
Phvul.008G071700 Phaseolus vulgaris
Phvul.009G163700 Phaseolus vulgaris
Phvul.010G092100 Phaseolus vulgaris
Potri.002G153700 Populus trichocarpa
Potri.002G224400 Populus trichocarpa
Potri.012G104400 Populus trichocarpa
Potri.014G076500 Populus trichocarpa
Potri.014G158700 Populus trichocarpa
Potri.015G103700 Populus trichocarpa
Pp3c14_6300 Physcomitrium patens
Pp3c17_11760 Physcomitrium patens
Pp3c17_11764 Physcomitrium patens
Pp3c1_27190 Physcomitrium patens
Pp3c2_15540 Physcomitrium patens
Prupe.2G155000 Prunus persica
Prupe.3G210100 Prunus persica
Prupe.5G144800 Prunus persica
Psat3g113240 Pisum sativum
Psat4g199280 Pisum sativum
Psat5g053840 Pisum sativum
PSO017G0138 Papaver somniferum
PSO478G0337 Papaver somniferum
PSO478G2570 Papaver somniferum
PSO478G3591 Papaver somniferum
PSO782G2974 Papaver somniferum
PSO782G5226 Papaver somniferum
QL08p030667 Quercus lobata
QL08p050579 Quercus lobata
QL10p001085 Quercus lobata
RcHm_v2.0_Chr1g0352331 Rosa chinensis
RcHm_v2.0_Chr2g0158031 Rosa chinensis
RcHm_v2.0_Chr7g0189111 Rosa chinensis
RcHm_v2.0_Chr7g0211441 Rosa chinensis
Rhsim01G0154600 Rhododendron simsii
Rhsim04G0050300 Rhododendron simsii
Rhsim07G0020800 Rhododendron simsii
Rhsim12G0178700 Rhododendron simsii
Sabra02G0121800 Salix brachista
Sabra12G0076800 Salix brachista
Sabra14G0055700 Salix brachista
Sabra14G0120500 Salix brachista
Sabra15G0123200 Salix brachista
SalBow1G7783 Salvia bowleyana
SalBow1G8237 Salvia bowleyana
SalBow3G2146 Salvia bowleyana
SalBow4G1272 Salvia bowleyana
SalBow4G2769 Salvia bowleyana
SalBow5G4207 Salvia bowleyana
SalBow5G4223 Salvia bowleyana
SalBow6G1927 Salvia bowleyana
SalBow7G4227 Salvia bowleyana
SalBow8G5045 Salvia bowleyana
Sc02g0002200 Simmondsia chinensis
Sc04g0000320 Simmondsia chinensis
Sc06g0009660 Simmondsia chinensis
Sc23g0003260 Simmondsia chinensis
Sed0000393 Sechium edule
Sed0003645 Sechium edule
Sed0003646 Sechium edule
Sed0004904 Sechium edule
Sed0009631 Sechium edule
Sed0013255 Sechium edule
Sed0022908 Sechium edule
SEGI_04334 Sequoiadendron giganteum
SEGI_14099 Sequoiadendron giganteum
SEGI_15798 Sequoiadendron giganteum
SEGI_41007 Sequoiadendron giganteum
SGA_v2.0_scaffold142G35695 Striga asiatica
SGA_v2.0_scaffold153G37070 Striga asiatica
SGA_v2.0_scaffold159G37557 Striga asiatica
SGA_v2.0_scaffold34G13759 Striga asiatica
SGA_v2.0_scaffold40G15596 Striga asiatica
SGA_v2.0_scaffold47G17576 Striga asiatica
SGA_v2.0_scaffold540G52804 Striga asiatica
SGA_v2.0_scaffold540G52808 Striga asiatica
SGA_v2.0_scaffold70G23388 Striga asiatica
SHI14133 Sapria himalayana
SMO347G0222 Selaginella moellendorffii
SMO347G0609 Selaginella moellendorffii
Solyc01g091740.4 Solanum lycopersicum
Solyc03g097740.1 Solanum lycopersicum
Solyc07g049390.3 Solanum lycopersicum
Sopen01g037520 Solanum pennellii
Sopen03g028480 Solanum pennellii
Sopen07g024730 Solanum pennellii
Sp1g00450 Schrenkiella parvula
Sp4g27770 Schrenkiella parvula
Sp6g13030 Schrenkiella parvula
TAR020G0002 Trochodendron aralioides
TAR371G0001 Trochodendron aralioides
TAR374G1300 Trochodendron aralioides
TAR375G0524 Trochodendron aralioides
TAR629G0250 Trochodendron aralioides
TAR629G2076 Trochodendron aralioides
TAR629G3251 Trochodendron aralioides
TAR636G0933 Trochodendron aralioides
THA.LOC104802011 Tarenaya hassleriana
THA.LOC104808043 Tarenaya hassleriana
THA.LOC104809646 Tarenaya hassleriana
THA.LOC104814093 Tarenaya hassleriana
Thecc.01G182300 Theobroma cacao
Thecc.01G368200 Theobroma cacao
Thecc.03G137400 Theobroma cacao
Thhalv10001387m.g Eutrema salsugineum
Thhalv10007207m.g Eutrema salsugineum
Thhalv10013161m.g Eutrema salsugineum
Thhalv10028711m.g Eutrema salsugineum
TPR.G17602 Trifolium pratense
TPR.G21579 Trifolium pratense
TPR.G37857 Trifolium pratense
TWI14G0610 Tripterygium wilfordii
TWI23G0437 Tripterygium wilfordii
TWI23G0836 Tripterygium wilfordii
TWI36G0748 Tripterygium wilfordii
TWI39G1035 Tripterygium wilfordii
TWI59G0102 Tripterygium wilfordii
unitig_0.g1285 Utricularia gibba
unitig_22.g5364 Utricularia gibba
unitig_26.g9927 Utricularia gibba
unitig_27.g25085 Utricularia gibba
unitig_27.g25086 Utricularia gibba
unitig_52.g17332 Utricularia gibba
unitig_61.g26401 Utricularia gibba
unitig_744.g24640 Utricularia gibba
vmacro13335 Vaccinium macrocarpon
vmacro20969 Vaccinium macrocarpon
VMungo0331G1950 Vigna mungo
VMungo1309G2808 Vigna mungo
VMungo1309G3027 Vigna mungo
VMungo1383G0510 Vigna mungo
Zm00001eb001150 Zea mays
Zm00001eb021400 Zea mays
Zm00001eb095530 Zea mays
Zm00001eb113050 Zea mays
Zm00001eb170220 Zea mays

User provided reference genes

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