Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p35430 Brassica napus
A04p13680 Brassica napus
A06p41210 Brassica napus
A07p20400 Brassica napus
A08p22530 Brassica napus
Aa31LG2G5430 Aethionema arabicum
Aa31LG6G13940 Aethionema arabicum
Aa31LG9G980 Aethionema arabicum
Aa31sc156G40 Aethionema arabicum
Actinidia00480 Actinidia chinensis
Actinidia05955 Actinidia chinensis
Actinidia12082 Actinidia chinensis
Actinidia12966 Actinidia chinensis
Actinidia16501 Actinidia chinensis
Actinidia36148 Actinidia chinensis
Actinidia36524 Actinidia chinensis
Ah.01g013850 Amaranthus hybridus
Ah.01g019890 Amaranthus hybridus
Ah.02g124200 Amaranthus hybridus
Ah.02g126120 Amaranthus hybridus
AL5G16720 Arabidopsis lyrata
AL7G13800 Arabidopsis lyrata
AL7G48820 Arabidopsis lyrata
AL7G49160 Arabidopsis lyrata
AL9U12170 Arabidopsis lyrata
Aqoxy5G01387 Aquilegia oxysepala
Aqoxy5G01388 Aquilegia oxysepala
Aqoxy5G01403 Aquilegia oxysepala
Aqoxy5G03615 Aquilegia oxysepala
Aqoxy6G00939 Aquilegia oxysepala
Aqoxy6G01357 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2FUK2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.438RTV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83TBZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8AWN39 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J5GQ65 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q3AJBC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2QVME Arachis hypogaea
AT3G27390 Arabidopsis thaliana
AT4G12680 Arabidopsis thaliana
AT4G37030 Arabidopsis thaliana
AT5G40640 Arabidopsis thaliana
ATR0100G013 Amborella trichopoda
ATR0733G045 Amborella trichopoda
ATR0751G262 Amborella trichopoda
ATR0824G276 Amborella trichopoda
Atru.chr3.347 Acer truncatum
Atru.chr3.455_Atru.chr3.456 Acer truncatum
Atru.chr6.2467 Acer truncatum
Atru.chr6.3436 Acer truncatum
AUR62001942 Chenopodium quinoa
AUR62003246 Chenopodium quinoa
AUR62003864 Chenopodium quinoa
AUR62011400 Chenopodium quinoa
AUR62016658 Chenopodium quinoa
AUR62027224 Chenopodium quinoa
AUR62028412 Chenopodium quinoa
AUR62029088 Chenopodium quinoa
AUR62041938 Chenopodium quinoa
BcaB02g07934 Brassica carinata
BcaB03g12357 Brassica carinata
BcaB03g12361 Brassica carinata
BcaB03g16190 Brassica carinata
BcaB06g27540 Brassica carinata
BcaB07g30162 Brassica carinata
BcaB07g30163 Brassica carinata
BcaC01g00429 Brassica carinata
BcaC02g09471 Brassica carinata
BcaC03g17458 Brassica carinata
BcaC06g33822 Brassica carinata
BcaC08g44475 Brassica carinata
BcaNung05654 Brassica carinata
BolC2t11477H Brassica oleracea
BolC3t20216H Brassica oleracea
BolC4t25895H Brassica oleracea
BolC4t26348H Brassica oleracea
BolC6t37123H Brassica oleracea
BolC7t44164H Brassica oleracea
BraA02t08544Z Brassica rapa
BraA04t17028Z Brassica rapa
BraA06t27044Z Brassica rapa
BraA07t29737Z Brassica rapa
BraA08t34209Z Brassica rapa
C02p54140 Brassica napus
C03p79670 Brassica napus
C04p43180 Brassica napus
C04p47470 Brassica napus
C05p41600 Brassica napus
C06p19280 Brassica napus
C07p36460 Brassica napus
C08p53770 Brassica napus
CAN.G33.5 Capsicum annuum
CAN.G473.43 Capsicum annuum
CAN.G80.2 Capsicum annuum
CAN.G826.2 Capsicum annuum
CAN.G836.74 Capsicum annuum
CAN.G908.6 Capsicum annuum
CANSAT01G0216 Cannabis sativa
CANSAT64G0063 Cannabis sativa
CANSAT64G1436 Cannabis sativa
CARHR148730 Cardamine hirsuta
CARHR218010 Cardamine hirsuta
CARHR245480 Cardamine hirsuta
CARHR261320 Cardamine hirsuta
Carub.0005s0570 Capsella rubella
Carub.0007s0323 Capsella rubella
Carub.0007s3030 Capsella rubella
Carub.0007s3485 Capsella rubella
Ca_03832_v3 Cicer arietinum L.
Ca_04395_v3 Cicer arietinum L.
Ca_16330_v3 Cicer arietinum L.
Ca_19504_v3 Cicer arietinum L.
Cc05_g01900 Coffea canephora
Cc07_g00230 Coffea canephora
Cc07_g00240 Coffea canephora
Cc07_g05920 Coffea canephora
CDE02G3879 Ceratophyllum demersum
CDE02G4712 Ceratophyllum demersum
CDE06G1470 Ceratophyllum demersum
CDE09G0007 Ceratophyllum demersum
CDE09G1346 Ceratophyllum demersum
CDE09G1417 Ceratophyllum demersum
Cfa004005 Carpinus fangiana
Cfa007301 Carpinus fangiana
Ciclev10014701m.g Citrus clementina
Ciclev10014727m.g Citrus clementina
Ciclev10025278m.g Citrus clementina
CiPaw.01G019300 Carya illinoinensis
CiPaw.03G048500 Carya illinoinensis
CiPaw.03G284400 Carya illinoinensis
CiPaw.04G031900 Carya illinoinensis
ClCG00G000740 Citrullus lanatus
ClCG00G001300 Citrullus lanatus
ClCG09G019540 Citrullus lanatus
COL.COLO4_11397 Corchorus olitorius
COL.COLO4_19665 Corchorus olitorius
Cpa.g.sc130.58 Carica papaya
Cpa.g.sc136.63 Carica papaya
Cpa.g.sc136.64 Carica papaya
Cpa.g.sc55.166 Carica papaya
Cre07.g325756 Chlamydomonas reinhardtii
CsaV3_3G027500 Cucumis sativus L.
CsaV3_5G026840 Cucumis sativus L.
CsaV3_6G009760 Cucumis sativus L.
CSS0004241 Camellia sinensis var. sinensis
CSS0009153 Camellia sinensis var. sinensis
CSS0009816 Camellia sinensis var. sinensis
CSS0012766 Camellia sinensis var. sinensis
CSS0013906 Camellia sinensis var. sinensis
CSS0022170 Camellia sinensis var. sinensis
CSS0041978 Camellia sinensis var. sinensis
CSS0041992 Camellia sinensis var. sinensis
CSS0044151 Camellia sinensis var. sinensis
CSS0044714 Camellia sinensis var. sinensis
DCAR_008752 Daucus carota
DCAR_010901 Daucus carota
DCAR_015071 Daucus carota
DCAR_021748 Daucus carota
DCAR_025728 Daucus carota
Dinv05329 Davidia involucrata
Dinv25708 Davidia involucrata
Dinv33398 Davidia involucrata
Dinv33399 Davidia involucrata
Dinv39864 Davidia involucrata
Dinv42108 Davidia involucrata
Duzib084G0717 Durio zibethinus
Duzib138G1482 Durio zibethinus
Duzib147G0923 Durio zibethinus
Duzib147G1419 Durio zibethinus
Duzib264G0365 Durio zibethinus
Duzib264G1102 Durio zibethinus
ECA232G1519 Erigeron canadensis
ECA232G3456 Erigeron canadensis
ECA240G3131 Erigeron canadensis
EL10Ac6g14148 Beta vulgaris
EL10Ac6g14828 Beta vulgaris
EL10Ac6g15761 Beta vulgaris
EL10Ac9g21794 Beta vulgaris
EL10Ac9g22700 Beta vulgaris
Eucgr.A01381 Eucalyptus grandis
Eucgr.A01383 Eucalyptus grandis
Eucgr.I01703 Eucalyptus grandis
Eucgr.J02270 Eucalyptus grandis
FAN02G1770 Fragaria x ananassa
FAN02G4270 Fragaria x ananassa
FAN05G2166 Fragaria x ananassa
FAN05G3140 Fragaria x ananassa
FAN09G2885 Fragaria x ananassa
FAN09G3105 Fragaria x ananassa
FAN14G0825 Fragaria x ananassa
FAN14G3127 Fragaria x ananassa
FAN19G0070 Fragaria x ananassa
FAN19G0273 Fragaria x ananassa
FAN23G1283 Fragaria x ananassa
FAN26G0871 Fragaria x ananassa
FAN26G1299 Fragaria x ananassa
FAN26G3085 Fragaria x ananassa
FAN28G1589 Fragaria x ananassa
FvH4_1g15860 Fragaria vesca
FvH4_1g16000 Fragaria vesca
FvH4_6g40250 Fragaria vesca
FvH4_6g52230 Fragaria vesca
Glyma.13G007902 Glycine max
Glyma.16G066400 Glycine max
Glyma.17G175600 Glycine max
Glyma.19G054500 Glycine max
Glyma.19G080400 Glycine max
Glyma.20G061600 Glycine max
Gohir.A05G342600 Gossypium hirsutum
Gohir.A07G193700 Gossypium hirsutum
Gohir.A09G031800 Gossypium hirsutum
Gohir.A11G191200 Gossypium hirsutum
Gohir.D04G080500 Gossypium hirsutum
Gohir.D07G199900 Gossypium hirsutum
Gohir.D09G031900 Gossypium hirsutum
Gohir.D11G198000 Gossypium hirsutum
Gorai.001G224100 Gossypium raimondii
Gorai.006G036800 Gossypium raimondii
Gorai.007G211900 Gossypium raimondii
Gorai.012G091500 Gossypium raimondii
GSVIVG01003979001 Vitis vinifera
GSVIVG01022144001 Vitis vinifera
GSVIVG01030132001 Vitis vinifera
GSVIVG01031854001 Vitis vinifera
HanXRQChr08g0220361 Helianthus annuus
HanXRQChr09g0255891 Helianthus annuus
HanXRQChr09g0263541 Helianthus annuus
HanXRQChr13g0389871 Helianthus annuus
HanXRQChr14g0451441 Helianthus annuus
HanXRQChr15g0486861 Helianthus annuus
Haze_12581 Corylus avellana
Haze_14792 Corylus avellana
Haze_15418 Corylus avellana
Hma1.2p1_0279F.1_g112080 Hydrangea macrophylla
Hma1.2p1_0584F.1_g183230 Hydrangea macrophylla
Hma1.2p1_1648F.1_g295580 Hydrangea macrophylla
HPP92_007499 Vanilla planifolia
HPP92_007500 Vanilla planifolia
HPP92_008262 Vanilla planifolia
HPP92_008266 Vanilla planifolia
HPP92_008270 Vanilla planifolia
HPP92_016381 Vanilla planifolia
HPP92_016729 Vanilla planifolia
Hund01572 Selenicereus undatus
Hund01573 Selenicereus undatus
Hund06205 Selenicereus undatus
Hund13013 Selenicereus undatus
Hund16332 Selenicereus undatus
Hund20695 Selenicereus undatus
Hund28496 Selenicereus undatus
Lalb_Chr02g0158021 Lupinus albus
Lalb_Chr05g0226611 Lupinus albus
Lalb_Chr10g0094241 Lupinus albus
Lalb_Chr14g0362961 Lupinus albus
Lalb_Chr16g0378481 Lupinus albus
Lalb_Chr24g0403441 Lupinus albus
Lj1g0025444 Lotus japonicus
Lj2g0011107 Lotus japonicus
Lj4A144T45 Lonicera japonica
Lj4g0015461 Lotus japonicus
Lj6g0025060 Lotus japonicus
Lj7A19G25 Lonicera japonica
Lj7A604T61 Lonicera japonica
Lj7C16G2 Lonicera japonica
Lj8A138T39 Lonicera japonica
Lsat_1_v5_gn_2_81840 Lactuca sativa
Lsat_1_v5_gn_2_81860 Lactuca sativa
Lsat_1_v5_gn_2_93480 Lactuca sativa
Lsat_1_v5_gn_4_166021 Lactuca sativa
Lsat_1_v5_gn_4_184700 Lactuca sativa
Lsat_1_v5_gn_5_91881 Lactuca sativa
Lsat_1_v5_gn_9_103001 Lactuca sativa
Manes.12G067301 Manihot esculenta
Manes.12G103000 Manihot esculenta
Manes.13G131100 Manihot esculenta
Manes.15G154600 Manihot esculenta
Manes.17G108700 Manihot esculenta
Mapoly0047s0135 Marchantia polymorpha
MBI02_g17331_MAGBIO Magnolia biondii
MBI06_g24644_MAGBIO Magnolia biondii
MBI11_g20909_MAGBIO Magnolia biondii
MBI14_g29299_MAGBIO Magnolia biondii
MBI14_g37031_MAGBIO Magnolia biondii
MBI14_g37032_MAGBIO Magnolia biondii
MBI16_g31486_MAGBIO Magnolia biondii
MBI19_g23695_MAGBIO Magnolia biondii
MD00G1044300 Malus domestica
MD02G1170500 Malus domestica
MD09G1019400 Malus domestica
MD09G1174800 Malus domestica
MD15G1282200 Malus domestica
MD17G1020000 Malus domestica
MD17G1121000 Malus domestica
Medtr3g082330 Medicago truncatula
Medtr3g082410 Medicago truncatula
Medtr6g022160 Medicago truncatula
Medtr7g031900 Medicago truncatula
MELO3C013458.2 Cucumis melo
MELO3C014825.2 Cucumis melo
MELO3C021610.2 Cucumis melo
Migut.H00443 Erythranthe guttata
Migut.H01279 Erythranthe guttata
Migut.K01426 Erythranthe guttata
MSTRG.15546 Avicennia marina
MSTRG.23758 Avicennia marina
MSTRG.3275 Avicennia marina
MSTRG.3276 Avicennia marina
Nitab4.5_0000310g0030 Nicotiana tabacum
Nitab4.5_0000935g0110 Nicotiana tabacum
Nitab4.5_0001031g0220 Nicotiana tabacum
Nitab4.5_0001031g0260 Nicotiana tabacum
Nitab4.5_0001034g0110 Nicotiana tabacum
Nitab4.5_0001501g0050 Nicotiana tabacum
Nitab4.5_0004941g0010 Nicotiana tabacum
Nitab4.5_0013929g0010 Nicotiana tabacum
Nn1g05820 Nelumbo nucifera
Nn1g07586 Nelumbo nucifera
Nn3g16609 Nelumbo nucifera
Nn4g22492 Nelumbo nucifera
Nn5g30237 Nelumbo nucifera
Nn6g32147 Nelumbo nucifera
Oeu009811.1 Olea europaea
Oeu009812.1 Olea europaea
Oeu024304.1 Olea europaea
Oeu024305.1 Olea europaea
Oeu040448.4 Olea europaea
Oeu050446.2 Olea europaea
Oeu054653.1 Olea europaea
Os02g0597800 Oryza sativa ssp. japonica
Os04g0449500 Oryza sativa ssp. japonica
Os04g0483200 Oryza sativa ssp. japonica
Os06g0300500 Oryza sativa ssp. japonica
Peaxi162Scf00289g00037 Petunia axillaris
Peaxi162Scf00289g00038 Petunia axillaris
Peaxi162Scf00359g00321 Petunia axillaris
Peaxi162Scf00420g00245 Petunia axillaris
Peaxi162Scf00450g00714 Petunia axillaris
Peaxi162Scf00700g00236 Petunia axillaris
PGR031G2577 Punica granatum
PGR142G3710 Punica granatum
PGSC0003DMG400012621 Solanum tuberosum
PGSC0003DMG400015779 Solanum tuberosum
PGSC0003DMG400017415 Solanum tuberosum
Phvul.003G244600 Phaseolus vulgaris
Phvul.004G058900 Phaseolus vulgaris
Phvul.007G123002 Phaseolus vulgaris
Phvul.008G145500 Phaseolus vulgaris
Potri.001G338900 Populus trichocarpa
Potri.007G035400 Populus trichocarpa
Potri.007G042400 Populus trichocarpa
Potri.014G170800 Populus trichocarpa
Pp3c3_21970 Physcomitrium patens
Pp3c5_2850 Physcomitrium patens
Pp3c6_21790 Physcomitrium patens
Prupe.3G192900 Prunus persica
Prupe.3G297000 Prunus persica
Prupe.3G297600 Prunus persica
Prupe.7G134900 Prunus persica
Psat1g083080 Pisum sativum
Psat3g169480 Pisum sativum
Psat4g087080 Pisum sativum
Psat5g105480 Pisum sativum
PSO063G4453 Papaver somniferum
PSO170G0397 Papaver somniferum
PSO210G5226 Papaver somniferum
PSO210G7511 Papaver somniferum
PSO541G1298 Papaver somniferum
PSO541G3537 Papaver somniferum
PSO675G3932 Papaver somniferum
PSO675G4465 Papaver somniferum
PSO782G2799 Papaver somniferum
QL02p073419 Quercus lobata
QL04p066688 Quercus lobata
QL06p041796 Quercus lobata
QL06p043996 Quercus lobata
RcHm_v2.0_Chr2g0105181 Rosa chinensis
RcHm_v2.0_Chr2g0155271 Rosa chinensis
RcHm_v2.0_Chr2g0173781 Rosa chinensis
Rhsim06G0179400 Rhododendron simsii
Rhsim08G0101400 Rhododendron simsii
Rhsim10G0012700 Rhododendron simsii
Sabra07G0031100 Salix brachista
Sabra07G0037600 Salix brachista
Sabra14G0130200 Salix brachista
Sabra16G0219500 Salix brachista
SalBow1G3082 Salvia bowleyana
SalBow1G6036 Salvia bowleyana
SalBow1G6525 Salvia bowleyana
SalBow7G0906 Salvia bowleyana
Sc03g0001540 Simmondsia chinensis
Sc03g0007180 Simmondsia chinensis
Sed0000134 Sechium edule
Sed0000877 Sechium edule
Sed0004409 Sechium edule
Sed0004778 Sechium edule
Sed0005133 Sechium edule
SEGI_03462 Sequoiadendron giganteum
SEGI_15581 Sequoiadendron giganteum
SEGI_21053 Sequoiadendron giganteum
SEGI_21180 Sequoiadendron giganteum
SEGI_27478 Sequoiadendron giganteum
SEGI_35129 Sequoiadendron giganteum
SGA_v2.0_scaffold15G07281 Striga asiatica
SGA_v2.0_scaffold47G17533 Striga asiatica
SGA_v2.0_scaffold49G18396 Striga asiatica
SHI41289 Sapria himalayana
SMO174G0262 Selaginella moellendorffii
SMO297G0002 Selaginella moellendorffii
Solyc02g090690.3 Solanum lycopersicum
Solyc02g090700.2 Solanum lycopersicum
Solyc02g093630.3 Solanum lycopersicum
Solyc07g045140.4 Solanum lycopersicum
Sopen02g035330 Solanum pennellii
Sopen02g038260 Solanum pennellii
Sopen07g023690 Solanum pennellii
Sp2g16580 Schrenkiella parvula
Sp7g01230 Schrenkiella parvula
Sp7g08930 Schrenkiella parvula
Sp7g34730 Schrenkiella parvula
TAR156G0001 Trochodendron aralioides
TAR156G0003 Trochodendron aralioides
TAR376G1150 Trochodendron aralioides
TAR381G1036 Trochodendron aralioides
TAR381G1347 Trochodendron aralioides
TAR622G0579 Trochodendron aralioides
TAR628G0310 Trochodendron aralioides
TAR628G0469 Trochodendron aralioides
TAR628G1094 Trochodendron aralioides
TAR629G1887 Trochodendron aralioides
THA.LOC104819844 Tarenaya hassleriana
THA.LOC104825310 Tarenaya hassleriana
THA.LOC104826634 Tarenaya hassleriana
Thecc.01G054200 Theobroma cacao
Thecc.01G200200 Theobroma cacao
Thecc.04G024600 Theobroma cacao
Thhalv10004240m.g Eutrema salsugineum
Thhalv10004271m.g Eutrema salsugineum
Thhalv10024790m.g Eutrema salsugineum
Thhalv10027698m.g Eutrema salsugineum
TPR.G10247 Trifolium pratense
TPR.G1070 Trifolium pratense
TPR.G27422 Trifolium pratense
TPR.G27425 Trifolium pratense
TPR.G36266 Trifolium pratense
TPR.G36587 Trifolium pratense
TPR.G7860 Trifolium pratense
TWI09G0731 Tripterygium wilfordii
TWI36G1760 Tripterygium wilfordii
TWI73G0881 Tripterygium wilfordii
TWI75G1814 Tripterygium wilfordii
unitig_60.g25512 Utricularia gibba
vmacro05906 Vaccinium macrocarpon
vmacro12056 Vaccinium macrocarpon
vmacro17946 Vaccinium macrocarpon
VMungo0251G1839 Vigna mungo
VMungo0464G0989 Vigna mungo
VMungo0647G1444 Vigna mungo
VMungo1383G0867 Vigna mungo
Zm00001eb076890 Zea mays
Zm00001eb079310 Zea mays
Zm00001eb081420 Zea mays
Zm00001eb182930 Zea mays
Zm00001eb203430 Zea mays
Zm00001eb246250 Zea mays
Zm00001eb270020 Zea mays
Zm00001eb281140 Zea mays

User provided reference genes

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