Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00270 Brassica napus
A03p27380 Brassica napus
A06p17150 Brassica napus
A07p42360 Brassica napus
A07p42640 Brassica napus
A08p29080 Brassica napus
A09p58180 Brassica napus
Aa31LG10G9840 Aethionema arabicum
Aa31LG4G6780 Aethionema arabicum
Aa31LG4G7080 Aethionema arabicum
Aa31LG6G16110 Aethionema arabicum
Aa31LG7G15020 Aethionema arabicum
Aa31LG7G5230 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2003 Anthoceros agrestis
Actinidia00545 Actinidia chinensis
Actinidia03436 Actinidia chinensis
Actinidia29503 Actinidia chinensis
Actinidia29504 Actinidia chinensis
Actinidia37898 Actinidia chinensis
Ah.01g019150 Amaranthus hybridus
Ah.05g169250 Amaranthus hybridus
Ah.11g042670 Amaranthus hybridus
AL1G34130 Arabidopsis lyrata
AL2G36850 Arabidopsis lyrata
AL2G37190 Arabidopsis lyrata
AL4G10700 Arabidopsis lyrata
AL734U10010 Arabidopsis lyrata
AL7G11090 Arabidopsis lyrata
Aqoxy5G00906 Aquilegia oxysepala
Aqoxy6G00268 Aquilegia oxysepala
Aqoxy6G01187 Aquilegia oxysepala
Aqoxy6G01189 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6M2MGC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73E5NM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J5ATDZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JU3PXC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZV34CK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZYC0YM Arachis hypogaea
AT1G21080 Arabidopsis thaliana
AT1G76700 Arabidopsis thaliana
AT1G77020 Arabidopsis thaliana
AT2G21510 Arabidopsis thaliana
AT4G39150 Arabidopsis thaliana
ATR0585G018 Amborella trichopoda
ATR0605G175 Amborella trichopoda
ATR0820G020 Amborella trichopoda
Atru.chr13.1649 Acer truncatum
Atru.chr13.9 Acer truncatum
Atru.chr5.3077 Acer truncatum
Atru.chr5.3079 Acer truncatum
AUR62007670 Chenopodium quinoa
AUR62011289 Chenopodium quinoa
AUR62013464 Chenopodium quinoa
AUR62016770 Chenopodium quinoa
AUR62035196 Chenopodium quinoa
AUR62042528 Chenopodium quinoa
AUR62042529 Chenopodium quinoa
BcaB01g02968 Brassica carinata
BcaB03g12835 Brassica carinata
BcaB03g14282 Brassica carinata
BcaB07g32101 Brassica carinata
BcaC01g04864 Brassica carinata
BcaC05g26016 Brassica carinata
BcaC06g34888 Brassica carinata
BcaC07g37536 Brassica carinata
BcaC07g39076 Brassica carinata
BcaC07g41152 Brassica carinata
BcaC08g47180 Brassica carinata
BcaC08g47204 Brassica carinata
BcaC08g47222 Brassica carinata
BcaNung01276 Brassica carinata
BolC1t00044H Brassica oleracea
BolC3t15628H Brassica oleracea
BolC5t30680H Brassica oleracea
BolC6t38281H Brassica oleracea
BolC6t40118H Brassica oleracea
BolC6t40145H Brassica oleracea
BolC7t42747H Brassica oleracea
BolC8t49689H Brassica oleracea
BolC8t49692H Brassica oleracea
BolC8t51706H Brassica oleracea
BraA01t00034Z Brassica rapa
BraA03t11949Z Brassica rapa
BraA06t24818Z Brassica rapa
BraA07t31763Z Brassica rapa
BraA07t31786Z Brassica rapa
BraA08t34843Z Brassica rapa
BraA09t41207Z Brassica rapa
C01p00380 Brassica napus
C03p32990 Brassica napus
C04p16990 Brassica napus
C05p19800 Brassica napus
C06p31530 Brassica napus
C06p50920 Brassica napus
C06p51230 Brassica napus
C07p22480 Brassica napus
C08p20600 Brassica napus
C08p41450 Brassica napus
CAN.G1544.4 Capsicum annuum
CAN.G208.46 Capsicum annuum
CAN.G46.4 Capsicum annuum
CANSAT11G1464 Cannabis sativa
CANSAT21G0481 Cannabis sativa
CANSAT21G1833 Cannabis sativa
CANSAT25G0067 Cannabis sativa
CARHR021530 Cardamine hirsuta
CARHR053310 Cardamine hirsuta
CARHR070240 Cardamine hirsuta
CARHR070550 Cardamine hirsuta
CARHR110810 Cardamine hirsuta
CARHR112430 Cardamine hirsuta
CARHR247600 Cardamine hirsuta
Carub.0001s2054 Capsella rubella
Carub.0002s2360 Capsella rubella
Carub.0002s2394 Capsella rubella
Carub.0004s0055 Capsella rubella
Carub.0007s0103 Capsella rubella
Ca_12654_v3 Cicer arietinum L.
Ca_12671_v3 Cicer arietinum L.
Ca_23907_v3 Cicer arietinum L.
Ca_24328_v3 Cicer arietinum L.
CBR_g50001 Chara braunii
Cc00_g15100 Coffea canephora
Cc10_g00030 Coffea canephora
Cc10_g13210 Coffea canephora
Cc10_g13220 Coffea canephora
CDE04G1846 Ceratophyllum demersum
CDE06G1351 Ceratophyllum demersum
CDE07G0387 Ceratophyllum demersum
Cfa005047 Carpinus fangiana
Cfa014180 Carpinus fangiana
Cfa018392 Carpinus fangiana
Cfa027247 Carpinus fangiana
Ciclev10001330m.g Citrus clementina
Ciclev10003893m.g Citrus clementina
Ciclev10028792m.g Citrus clementina
CiPaw.06G133100 Carya illinoinensis
CiPaw.07G128600 Carya illinoinensis
CiPaw.07G128800 Carya illinoinensis
CiPaw.08G079800 Carya illinoinensis
CiPaw.15G023900 Carya illinoinensis
ClCG03G011430 Citrullus lanatus
ClCG07G003380 Citrullus lanatus
ClCG08G006310 Citrullus lanatus
ClCG11G004180 Citrullus lanatus
ClCG11G019240 Citrullus lanatus
COL.COLO4_16222 Corchorus olitorius
COL.COLO4_25980 Corchorus olitorius
COL.COLO4_35491 Corchorus olitorius
Cpa.g.c42818 Carica papaya
Cpa.g.sc106.7 Carica papaya
Cpa.g.sc26.75 Carica papaya
Cpa.g.sc36.85 Carica papaya
Cpa.g.sc753.1 Carica papaya
Cre06.g260350 Chlamydomonas reinhardtii
CsaV3_2G014990 Cucumis sativus L.
CsaV3_4G037840 Cucumis sativus L.
CsaV3_6G031130 Cucumis sativus L.
CSS0006725 Camellia sinensis var. sinensis
CSS0011724 Camellia sinensis var. sinensis
CSS0021414 Camellia sinensis var. sinensis
CSS0025560 Camellia sinensis var. sinensis
CSS0040281 Camellia sinensis var. sinensis
DCAR_003658 Daucus carota
DCAR_009843 Daucus carota
DCAR_013345 Daucus carota
DCAR_014396 Daucus carota
DCAR_028969 Daucus carota
Dinv05525 Davidia involucrata
Dinv25779 Davidia involucrata
Dinv42041 Davidia involucrata
Duzib041G0769 Durio zibethinus
Duzib052G0329 Durio zibethinus
Duzib066G0006 Durio zibethinus
Duzib128G0510 Durio zibethinus
Duzib132G0046 Durio zibethinus
Duzib248G0621 Durio zibethinus
ECA233G0672 Erigeron canadensis
ECA236G2451 Erigeron canadensis
ECA240G2586 Erigeron canadensis
ECA246G2590 Erigeron canadensis
EL10Ac1g01413 Beta vulgaris
EL10Ac1g01839 Beta vulgaris
EL10Ac9g21694 Beta vulgaris
Eucgr.F01962 Eucalyptus grandis
Eucgr.F01963 Eucalyptus grandis
Eucgr.F04280 Eucalyptus grandis
Eucgr.G01646 Eucalyptus grandis
Eucgr.G02150 Eucalyptus grandis
Eucgr.G02152 Eucalyptus grandis
Eucgr.L02883 Eucalyptus grandis
FAN04G0765 Fragaria x ananassa
FAN08G2804 Fragaria x ananassa
FAN13G1933 Fragaria x ananassa
FAN15G1446 Fragaria x ananassa
FAN15G2961 Fragaria x ananassa
FAN18G2316 Fragaria x ananassa
FAN20G1019 Fragaria x ananassa
FAN20G1738 Fragaria x ananassa
FAN24G0743 Fragaria x ananassa
FAN24G1795 Fragaria x ananassa
FAN24G3451 Fragaria x ananassa
FAN24G3514 Fragaria x ananassa
FAN27G0695 Fragaria x ananassa
FAN27G1769 Fragaria x ananassa
FAN27G3045 Fragaria x ananassa
FvH4_2g09550 Fragaria vesca
FvH4_2g09560 Fragaria vesca
FvH4_2g15170 Fragaria vesca
FvH4_5g26910 Fragaria vesca
Glyma.01G245600 Glycine max
Glyma.01G245700 Glycine max
Glyma.11G178505 Glycine max
Glyma.12G235500 Glycine max
Glyma.13G036700 Glycine max
Glyma.13G200800 Glycine max
Glyma.14G118300 Glycine max
Gohir.A02G109400 Gossypium hirsutum
Gohir.A04G124400 Gossypium hirsutum
Gohir.A06G180700 Gossypium hirsutum
Gohir.A12G042600 Gossypium hirsutum
Gohir.A13G009100 Gossypium hirsutum
Gohir.A13G032700 Gossypium hirsutum
Gohir.D03G062200 Gossypium hirsutum
Gohir.D04G166500 Gossypium hirsutum
Gohir.D06G187500 Gossypium hirsutum
Gohir.D12G029700 Gossypium hirsutum
Gohir.D13G009800 Gossypium hirsutum
Gohir.D13G030833 Gossypium hirsutum
Gorai.008G030600 Gossypium raimondii
Gorai.010G219800 Gossypium raimondii
Gorai.012G154900 Gossypium raimondii
Gorai.013G010500 Gossypium raimondii
Gorai.013G035100 Gossypium raimondii
Gorai.013G107100 Gossypium raimondii
GSVIVG01009982001 Vitis vinifera
GSVIVG01013476001 Vitis vinifera
GSVIVG01023820001 Vitis vinifera
HanXRQChr03g0069281 Helianthus annuus
HanXRQChr05g0160461 Helianthus annuus
HanXRQChr07g0204421 Helianthus annuus
HanXRQChr08g0216981 Helianthus annuus
HanXRQChr08g0232411 Helianthus annuus
HanXRQChr10g0310141 Helianthus annuus
Haze_02334 Corylus avellana
Haze_17676 Corylus avellana
Haze_22905 Corylus avellana
Hma1.2p1_0066F.1_g036160 Hydrangea macrophylla
Hma1.2p1_0851F.1_g228440 Hydrangea macrophylla
HPP92_008534 Vanilla planifolia
HPP92_018869 Vanilla planifolia
HPP92_018870 Vanilla planifolia
HPP92_018871 Vanilla planifolia
Hund05059 Selenicereus undatus
Hund06254 Selenicereus undatus
Hund17377 Selenicereus undatus
Lalb_Chr03g0032891 Lupinus albus
Lalb_Chr04g0263611 Lupinus albus
Lalb_Chr16g0376201 Lupinus albus
Lalb_Chr16g0376211 Lupinus albus
Lalb_Chr25g0281581 Lupinus albus
Lj1g0010770 Lotus japonicus
Lj1g0020049 Lotus japonicus
Lj1g0022033 Lotus japonicus
Lj3g0001593 Lotus japonicus
Lj4A815G23 Lonicera japonica
Lj4A815G26 Lonicera japonica
Lj4A815T25 Lonicera japonica
Lj5A194G78 Lonicera japonica
Lj9A377T86 Lonicera japonica
Lj9C377T5 Lonicera japonica
Lsat_1_v5_gn_3_821 Lactuca sativa
Lsat_1_v5_gn_6_97261 Lactuca sativa
Lsat_1_v5_gn_7_91540 Lactuca sativa
Lsat_1_v5_gn_8_25721 Lactuca sativa
Lsat_1_v5_gn_9_108061 Lactuca sativa
Manes.02G172700 Manihot esculenta
Manes.04G087332 Manihot esculenta
Manes.05G113900 Manihot esculenta
Manes.18G085200 Manihot esculenta
Mapoly0130s0038 Marchantia polymorpha
MBI01_g32837_MAGBIO Magnolia biondii
MBI01_g32840_MAGBIO Magnolia biondii
MBI06_g27444_MAGBIO Magnolia biondii
MBI10_g00751_MAGBIO Magnolia biondii
MBI16_g36845_MAGBIO Magnolia biondii
MCO16G446 Micromonas commoda
MD05G1010600 Malus domestica
MD05G1061900 Malus domestica
MD10G1009300 Malus domestica
MD10G1069700 Malus domestica
MD12G1067400 Malus domestica
MD14G1067500 Malus domestica
Medtr1g029460 Medicago truncatula
Medtr1g029470 Medicago truncatula
Medtr5g004570 Medicago truncatula
Medtr5g004600 Medicago truncatula
Medtr8g037810 Medicago truncatula
MELO3C008428.2 Cucumis melo
MELO3C017077.2 Cucumis melo
MELO3C023319.2 Cucumis melo
Migut.B00212 Erythranthe guttata
Migut.C00327 Erythranthe guttata
Migut.N03004 Erythranthe guttata
Migut.N03250 Erythranthe guttata
MSTRG.20064 Avicennia marina
MSTRG.22065 Avicennia marina
MSTRG.24534 Avicennia marina
MSTRG.24886 Avicennia marina
Nitab4.5_0000174g0100 Nicotiana tabacum
Nitab4.5_0001309g0100 Nicotiana tabacum
Nitab4.5_0003234g0140 Nicotiana tabacum
Nitab4.5_0003423g0090 Nicotiana tabacum
Nitab4.5_0003622g0060 Nicotiana tabacum
Nitab4.5_0026658g0010 Nicotiana tabacum
Nn1g05812 Nelumbo nucifera
Nn5g28516 Nelumbo nucifera
Nn5g29704 Nelumbo nucifera
Nn6g31512 Nelumbo nucifera
Oeu000726.1 Olea europaea
Oeu014731.2 Olea europaea
Oeu020738.1 Olea europaea
Oeu046148.1 Olea europaea
Os01g0702450 Oryza sativa ssp. japonica
Os02g0555700 Oryza sativa ssp. japonica
Os05g0543700 Oryza sativa ssp. japonica
Os08g0522600 Oryza sativa ssp. japonica
Os09g0493800 Oryza sativa ssp. japonica
Peaxi162Scf00016g00430 Petunia axillaris
Peaxi162Scf00064g01527 Petunia axillaris
Peaxi162Scf00066g01630 Petunia axillaris
PGR042G3765 Punica granatum
PGR044G1341 Punica granatum
PGR083G2256 Punica granatum
PGSC0003DMG400024837 Solanum tuberosum
PGSC0003DMG400030947 Solanum tuberosum
PGSC0003DMG401029307 Solanum tuberosum
Phvul.001G064900 Phaseolus vulgaris
Phvul.002G055050 Phaseolus vulgaris
Phvul.007G115900 Phaseolus vulgaris
Phvul.011G210000 Phaseolus vulgaris
Potri.002G000300 Populus trichocarpa
Potri.002G074600 Populus trichocarpa
Potri.004G158300 Populus trichocarpa
Potri.005G185800 Populus trichocarpa
Potri.005G260400 Populus trichocarpa
Potri.009G119800 Populus trichocarpa
Pp3c15_8150 Physcomitrium patens
Pp3c23_15320 Physcomitrium patens
Pp3c23_15410 Physcomitrium patens
Pp3c24_13630 Physcomitrium patens
Pp3c24_14260 Physcomitrium patens
Pp3c9_13020 Physcomitrium patens
PRCOL_00000771 Prasinoderma coloniale
PRCOL_00004100 Prasinoderma coloniale
PRCOL_00005323 Prasinoderma coloniale
Prupe.7G066900 Prunus persica
Prupe.8G013200 Prunus persica
Prupe.8G091300 Prunus persica
Prupe.8G091400 Prunus persica
Psat0s4560g0040 Pisum sativum
Psat4g148000 Pisum sativum
Psat6g039760 Pisum sativum
Psat6g071400 Pisum sativum
PSO017G7280 Papaver somniferum
PSO170G3355 Papaver somniferum
PSO170G6651 Papaver somniferum
PSO528G0227 Papaver somniferum
PSO541G1540 Papaver somniferum
PSO675G5750 Papaver somniferum
QL02p016607 Quercus lobata
QL09p029487 Quercus lobata
QL10p058583 Quercus lobata
QL10p059290 Quercus lobata
QL11p045194 Quercus lobata
RcHm_v2.0_Chr6g0265841 Rosa chinensis
RcHm_v2.0_Chr6g0265851 Rosa chinensis
RcHm_v2.0_Chr6g0277831 Rosa chinensis
RcHm_v2.0_Chr7g0217951 Rosa chinensis
Rhsim04G0034100 Rhododendron simsii
Rhsim07G0258500 Rhododendron simsii
Rhsim07G0258600 Rhododendron simsii
Rhsim11G0075100 Rhododendron simsii
Rhsim11G0180200 Rhododendron simsii
RhsimUnG0100600 Rhododendron simsii
Sabra02G0000500 Salix brachista
Sabra02G0000600 Salix brachista
Sabra02G0058100 Salix brachista
Sabra05G0142000 Salix brachista
Sabra05G0201100 Salix brachista
SalBow6G1283 Salvia bowleyana
SalBow6G4056 Salvia bowleyana
SalBow7G3454 Salvia bowleyana
Sc02g0004590 Simmondsia chinensis
Sc02g0009390 Simmondsia chinensis
Sc08g0000630 Simmondsia chinensis
Sc14g0002040 Simmondsia chinensis
Sc18g0005070 Simmondsia chinensis
Sc18g0005090 Simmondsia chinensis
Sed0000381 Sechium edule
Sed0009748 Sechium edule
Sed0012695 Sechium edule
Sed0023133 Sechium edule
SEGI_38964 Sequoiadendron giganteum
SEGI_39118 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08689 Striga asiatica
SGA_v2.0_scaffold25G11029 Striga asiatica
SGA_v2.0_scaffold58G20505 Striga asiatica
SHI05558 Sapria himalayana
SHI05559 Sapria himalayana
SHI05560 Sapria himalayana
SMO351G0018 Selaginella moellendorffii
Solyc01g109890.3 Solanum lycopersicum
Solyc04g063390.2 Solanum lycopersicum
Solyc12g095800.2 Solanum lycopersicum
Sopen01g052080 Solanum pennellii
Sopen04g026310 Solanum pennellii
Sopen12g031700 Solanum pennellii
Sp1g18750 Schrenkiella parvula
Sp4g00670 Schrenkiella parvula
Sp5g31850 Schrenkiella parvula
Sp5g32180 Schrenkiella parvula
Sp7g36670 Schrenkiella parvula
TAR376G0216 Trochodendron aralioides
TAR376G0400 Trochodendron aralioides
TAR376G1043 Trochodendron aralioides
TAR376G1117 Trochodendron aralioides
TAR378G0003 Trochodendron aralioides
TAR381G1421 Trochodendron aralioides
TAR628G1692 Trochodendron aralioides
THA.LOC104812029 Tarenaya hassleriana
THA.LOC104812063 Tarenaya hassleriana
Thecc.02G080800 Theobroma cacao
Thecc.08G096300 Theobroma cacao
Thecc.08G138600 Theobroma cacao
Thhalv10000200m.g Eutrema salsugineum
Thhalv10000223m.g Eutrema salsugineum
Thhalv10007857m.g Eutrema salsugineum
Thhalv10018664m.g Eutrema salsugineum
Thhalv10018713m.g Eutrema salsugineum
Thhalv10019530m.g Eutrema salsugineum
Thhalv10025633m.g Eutrema salsugineum
TPR.G1713 Trifolium pratense
TPR.G1891 Trifolium pratense
TPR.G21619 Trifolium pratense
TPR.G33309 Trifolium pratense
TWI12G0120 Tripterygium wilfordii
TWI32G0339 Tripterygium wilfordii
TWI34G0262 Tripterygium wilfordii
TWI56G0941 Tripterygium wilfordii
TWI75G1428 Tripterygium wilfordii
TWI79G0450 Tripterygium wilfordii
unitig_8.g3411 Utricularia gibba
vmacro00879 Vaccinium macrocarpon
vmacro00880 Vaccinium macrocarpon
vmacro02080 Vaccinium macrocarpon
vmacro04435 Vaccinium macrocarpon
vmacro04436 Vaccinium macrocarpon
VMungo1127G1699 Vigna mungo
VMungo1215G0679 Vigna mungo
VMungo1215G1159 Vigna mungo
Zm00001eb035420 Zea mays
Zm00001eb243690 Zea mays
Zm00001eb294570 Zea mays
Zm00001eb317080 Zea mays
Zm00001eb342590 Zea mays
Zm00001eb361030 Zea mays

User provided reference genes

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