Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35010 Brassica napus
A05p41170 Brassica napus
A10p07800 Brassica napus
Aa31LG5G17570 Aethionema arabicum
Aa31LG6G9890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1442 Anthoceros agrestis
Actinidia04760 Actinidia chinensis
Actinidia30095 Actinidia chinensis
Actinidia34777 Actinidia chinensis
Actinidia37579 Actinidia chinensis
Actinidia38908 Actinidia chinensis
Ah.05g167910 Amaranthus hybridus
Ah.05g167990 Amaranthus hybridus
Ah.06g195840 Amaranthus hybridus
AL1G51660 Arabidopsis lyrata
AL3G18230 Arabidopsis lyrata
Aqoxy2G03793 Aquilegia oxysepala
Aqoxy5G02066 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0ML2HS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.229YTE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3PMI9T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7NV4RJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AE82WW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FSP05R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJL8UB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JSVJ2H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KG7SDJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T0IQXW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6IMA7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2YMQK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X8HV17 Arachis hypogaea
AT1G43620 Arabidopsis thaliana
AT3G07020 Arabidopsis thaliana
ATR0787G118 Amborella trichopoda
ATR0820G028 Amborella trichopoda
Atru.chr12.2157 Acer truncatum
Atru.chr13.2089 Acer truncatum
Atru.chr5.1980 Acer truncatum
AUR62000371 Chenopodium quinoa
AUR62006726 Chenopodium quinoa
AUR62008882 Chenopodium quinoa
AUR62013593 Chenopodium quinoa
AUR62013600 Chenopodium quinoa
AUR62026689 Chenopodium quinoa
AUR62026696 Chenopodium quinoa
AUR62028489 Chenopodium quinoa
AUR62028490 Chenopodium quinoa
AUR62031826 Chenopodium quinoa
BcaB01g02348 Brassica carinata
BcaB04g21305 Brassica carinata
BcaB05g23789 Brassica carinata
BcaB07g33980 Brassica carinata
BcaC05g29760 Brassica carinata
BcaC05g29832 Brassica carinata
BcaC08g42815 Brassica carinata
BcaC09g47931 Brassica carinata
BcaC09g47933 Brassica carinata
BNapus_Darmor_BZH_scaffold_109p00290 Brassica napus
BolC1t05574H Brassica oleracea
BolC3t16529H Brassica oleracea
BolC5t34684H Brassica oleracea
BraA01t04403Z Brassica rapa
BraA03t12681Z Brassica rapa
BraA05t22843Z Brassica rapa
BraSC36t46022Z Brassica rapa
C03p42590 Brassica napus
C05p60380 Brassica napus
C06p00270 Brassica napus
CAN.G1215.2 Capsicum annuum
CAN.G153.12 Capsicum annuum
CAN.G4.32 Capsicum annuum
CAN.G941.42 Capsicum annuum
CANSAT01G3031 Cannabis sativa
CANSAT25G1624 Cannabis sativa
CANSAT54G0489 Cannabis sativa
CARHR035650 Cardamine hirsuta
CARHR081610 Cardamine hirsuta
Carub.0001s3461 Capsella rubella
Carub.0003s0654 Capsella rubella
Ca_07955_v3 Cicer arietinum L.
Ca_07957_v3 Cicer arietinum L.
Ca_10679_v3 Cicer arietinum L.
Ca_20014_v3 Cicer arietinum L.
Ca_29684_v3 Cicer arietinum L.
CBR_g4045 Chara braunii
Cc01_g17300 Coffea canephora
Cc10_g14450 Coffea canephora
CDE02G0826 Ceratophyllum demersum
CDE02G1392 Ceratophyllum demersum
CDE02G1428 Ceratophyllum demersum
CDE02G1884 Ceratophyllum demersum
CDE02G2080 Ceratophyllum demersum
CDE02G3062 Ceratophyllum demersum
CDE02G4110 Ceratophyllum demersum
CDE02G4304 Ceratophyllum demersum
CDE05G3579 Ceratophyllum demersum
CDE08G0506 Ceratophyllum demersum
CDE09G0682 Ceratophyllum demersum
CDE09G0745 Ceratophyllum demersum
CDE09G1114 Ceratophyllum demersum
CDE09G1232 Ceratophyllum demersum
CDE11G0011 Ceratophyllum demersum
Cfa002542 Carpinus fangiana
Cfa006300 Carpinus fangiana
Cfa016566 Carpinus fangiana
Cfa024916 Carpinus fangiana
Ciclev10000559m.g Citrus clementina
Ciclev10011454m.g Citrus clementina
Ciclev10020154m.g Citrus clementina
CiPaw.03G151900 Carya illinoinensis
CiPaw.04G107200 Carya illinoinensis
CiPaw.07G076100 Carya illinoinensis
CiPaw.15G015400 Carya illinoinensis
CiPaw.16G011300 Carya illinoinensis
CiPaw.16G011700 Carya illinoinensis
ClCG03G011070 Citrullus lanatus
ClCG03G011080 Citrullus lanatus
ClCG03G011100 Citrullus lanatus
ClCG07G001750 Citrullus lanatus
ClCG07G001760 Citrullus lanatus
ClCG08G007010 Citrullus lanatus
ClCG09G009190 Citrullus lanatus
COL.COLO4_04694 Corchorus olitorius
COL.COLO4_27423 Corchorus olitorius
COL.COLO4_29848 Corchorus olitorius
Cpa.g.sc21.209 Carica papaya
Cpa.g.sc8.181 Carica papaya
Cre07.g333450 Chlamydomonas reinhardtii
CsaV3_1G044800 Cucumis sativus L.
CsaV3_3G028750 Cucumis sativus L.
CsaV3_6G005200 Cucumis sativus L.
CsaV3_7G025750 Cucumis sativus L.
CSS0001447 Camellia sinensis var. sinensis
CSS0008276 Camellia sinensis var. sinensis
CSS0009423 Camellia sinensis var. sinensis
CSS0009566 Camellia sinensis var. sinensis
CSS0017947 Camellia sinensis var. sinensis
CSS0018820 Camellia sinensis var. sinensis
CSS0019903 Camellia sinensis var. sinensis
CSS0024599 Camellia sinensis var. sinensis
CSS0025604 Camellia sinensis var. sinensis
CSS0027405 Camellia sinensis var. sinensis
CSS0028086 Camellia sinensis var. sinensis
CSS0031042 Camellia sinensis var. sinensis
CSS0031244 Camellia sinensis var. sinensis
CSS0032998 Camellia sinensis var. sinensis
CSS0036202 Camellia sinensis var. sinensis
CSS0036758 Camellia sinensis var. sinensis
CSS0039304 Camellia sinensis var. sinensis
CSS0040054 Camellia sinensis var. sinensis
CSS0042021 Camellia sinensis var. sinensis
CSS0044343 Camellia sinensis var. sinensis
CSS0048400 Camellia sinensis var. sinensis
CSS0050525 Camellia sinensis var. sinensis
DCAR_004710 Daucus carota
DCAR_005506 Daucus carota
DCAR_014435 Daucus carota
DCAR_014437 Daucus carota
DCAR_014438 Daucus carota
Dinv04675 Davidia involucrata
Dinv08618 Davidia involucrata
Dinv19224 Davidia involucrata
Dinv25873 Davidia involucrata
Dinv41075 Davidia involucrata
Duzib116G0488 Durio zibethinus
Duzib133G0327 Durio zibethinus
Duzib138G1432 Durio zibethinus
Duzib177G0051 Durio zibethinus
Duzib177G0885 Durio zibethinus
ECA233G1228 Erigeron canadensis
ECA246G4709 Erigeron canadensis
ECA247G0761 Erigeron canadensis
ECA247G2500 Erigeron canadensis
ECA248G1629 Erigeron canadensis
EL10Ac1g01557 Beta vulgaris
EL10Ac1g01563 Beta vulgaris
EL10Ac4g09434 Beta vulgaris
EL10Ac7g17798 Beta vulgaris
Eucgr.B01378 Eucalyptus grandis
Eucgr.B01630 Eucalyptus grandis
Eucgr.F02699 Eucalyptus grandis
Eucgr.H00810 Eucalyptus grandis
Eucgr.H01372 Eucalyptus grandis
FAN03G2281 Fragaria x ananassa
FAN08G2614 Fragaria x ananassa
FAN09G4179 Fragaria x ananassa
FAN14G0560 Fragaria x ananassa
FAN15G1782 Fragaria x ananassa
FAN15G2095 Fragaria x ananassa
FAN15G2668 Fragaria x ananassa
FAN24G0398 Fragaria x ananassa
FAN24G0876 Fragaria x ananassa
FAN27G1089 Fragaria x ananassa
FAN27G1886 Fragaria x ananassa
FvH4_2g13560 Fragaria vesca
FvH4_2g19510 Fragaria vesca
FvH4_6g00960 Fragaria vesca
Glyma.02G081000 Glycine max
Glyma.03G083100 Glycine max
Glyma.09G252900 Glycine max
Glyma.09G252950 Glycine max
Glyma.10G224000 Glycine max
Glyma.17G119100 Glycine max
Glyma.18G149700 Glycine max
Glyma.18G239800 Glycine max
Glyma.20G167900 Glycine max
Gohir.A05G244000 Gossypium hirsutum
Gohir.A07G155200 Gossypium hirsutum
Gohir.A08G046600 Gossypium hirsutum
Gohir.A08G224400 Gossypium hirsutum
Gohir.D05G245000 Gossypium hirsutum
Gohir.D07G161450 Gossypium hirsutum
Gohir.D07G161500 Gossypium hirsutum
Gohir.D08G057100 Gossypium hirsutum
Gohir.D08G244700 Gossypium hirsutum
Gohir.D08G244750 Gossypium hirsutum
Gorai.001G184700 Gossypium raimondii
Gorai.004G058300 Gossypium raimondii
Gorai.004G261100 Gossypium raimondii
Gorai.009G254800 Gossypium raimondii
GSVIVG01019162001 Vitis vinifera
GSVIVG01028556001 Vitis vinifera
GSVIVG01034544001 Vitis vinifera
HanXRQChr01g0014721 Helianthus annuus
HanXRQChr03g0067791 Helianthus annuus
HanXRQChr05g0156921 Helianthus annuus
HanXRQChr10g0278951 Helianthus annuus
HanXRQChr10g0278961 Helianthus annuus
HanXRQChr10g0279941 Helianthus annuus
Haze_04509 Corylus avellana
Haze_17761 Corylus avellana
Haze_24769 Corylus avellana
Hma1.2p1_1061F.1_g253280 Hydrangea macrophylla
HPP92_001990 Vanilla planifolia
HPP92_007062 Vanilla planifolia
HPP92_013764 Vanilla planifolia
HPP92_025963 Vanilla planifolia
Hund05526 Selenicereus undatus
Hund17440 Selenicereus undatus
Hund17443 Selenicereus undatus
Hund21872 Selenicereus undatus
Lalb_Chr07g0193961 Lupinus albus
Lalb_Chr07g0193971 Lupinus albus
Lalb_Chr12g0209611 Lupinus albus
Lalb_Chr19g0126841 Lupinus albus
Lalb_Chr19g0126851 Lupinus albus
Lalb_Chr21g0305511 Lupinus albus
Lj1A82T79 Lonicera japonica
Lj1A82T80 Lonicera japonica
Lj1g0002188 Lotus japonicus
Lj2A1134T24 Lonicera japonica
Lj2A1135G32 Lonicera japonica
Lj2A52T91 Lonicera japonica
Lj2C52T16 Lonicera japonica
Lj2g0005253 Lotus japonicus
Lj3g0009715 Lotus japonicus
Lj5g0024627 Lotus japonicus
Lj7A375T59 Lonicera japonica
Lsat_1_v5_gn_1_90101 Lactuca sativa
Lsat_1_v5_gn_1_92720 Lactuca sativa
Lsat_1_v5_gn_2_51260 Lactuca sativa
Lsat_1_v5_gn_4_94880 Lactuca sativa
Lsat_1_v5_gn_5_118461 Lactuca sativa
Lsat_1_v5_gn_5_179140 Lactuca sativa
Lsat_1_v5_gn_5_179681 Lactuca sativa
Lsat_1_v5_gn_6_100401 Lactuca sativa
Lsat_1_v5_gn_6_100521 Lactuca sativa
Lsat_1_v5_gn_6_57080 Lactuca sativa
Lsat_1_v5_gn_8_23700 Lactuca sativa
Lsat_1_v5_gn_8_3181 Lactuca sativa
Lsat_1_v5_gn_9_123981 Lactuca sativa
Lsat_1_v5_gn_9_12700 Lactuca sativa
Manes.08G105200 Manihot esculenta
Manes.09G183500 Manihot esculenta
Manes.13G044100 Manihot esculenta
Manes.18G092800 Manihot esculenta
Mapoly0072s0049 Marchantia polymorpha
MBI07_g19558_MAGBIO Magnolia biondii
MBI09_g38855_MAGBIO Magnolia biondii
MBI10_g09192_MAGBIO Magnolia biondii
MBI10_g43788_MAGBIO Magnolia biondii
MD04G1239700 Malus domestica
MD05G1027200 Malus domestica
MD05G1179300 Malus domestica
MD10G1026500 Malus domestica
MD10G1168900 Malus domestica
MD12G1256800 Malus domestica
Medtr1g098640 Medicago truncatula
Medtr4g022580 Medicago truncatula
Medtr4g022610 Medicago truncatula
Medtr7g079430 Medicago truncatula
MELO3C008339.2 Cucumis melo
MELO3C010080.2 Cucumis melo
MELO3C012787.2 Cucumis melo
MELO3C020997.2 Cucumis melo
Migut.C00988 Erythranthe guttata
Migut.C00989 Erythranthe guttata
Migut.D00517 Erythranthe guttata
Migut.F01824 Erythranthe guttata
Migut.N02257 Erythranthe guttata
Migut.N03210 Erythranthe guttata
Migut.N03211 Erythranthe guttata
MSTRG.1090 Avicennia marina
MSTRG.12500 Avicennia marina
MSTRG.18378 Avicennia marina
Nitab4.5_0000059g0040 Nicotiana tabacum
Nitab4.5_0000456g0010 Nicotiana tabacum
Nitab4.5_0000456g0020 Nicotiana tabacum
Nitab4.5_0000846g0050 Nicotiana tabacum
Nitab4.5_0001056g0050 Nicotiana tabacum
Nitab4.5_0001062g0110 Nicotiana tabacum
Nitab4.5_0001740g0020 Nicotiana tabacum
Nitab4.5_0002497g0010 Nicotiana tabacum
Nitab4.5_0003180g0020 Nicotiana tabacum
Nitab4.5_0009814g0030 Nicotiana tabacum
Nn1g03136 Nelumbo nucifera
Nn3g19896 Nelumbo nucifera
Nn5g28761 Nelumbo nucifera
Oeu002060.1 Olea europaea
Oeu015460.1 Olea europaea
Oeu018506.1 Olea europaea
Oeu019503.1 Olea europaea
Oeu020386.4 Olea europaea
Oeu023366.1 Olea europaea
Oeu042908.1 Olea europaea
Oeu046043.1 Olea europaea
Oeu051273.1 Olea europaea
Oeu062016.3 Olea europaea
Os01g0867600 Oryza sativa ssp. japonica
Os04g0131850 Oryza sativa ssp. japonica
Os04g0131900 Oryza sativa ssp. japonica
Os07g0419500 Oryza sativa ssp. japonica
Peaxi162Scf00052g00098 Petunia axillaris
Peaxi162Scf00215g00412 Petunia axillaris
Peaxi162Scf00599g00218 Petunia axillaris
PGR042G0120 Punica granatum
PGR083G0543 Punica granatum
PGSC0003DMG400015817 Solanum tuberosum
PGSC0003DMG400024097 Solanum tuberosum
Phvul.004G093900 Phaseolus vulgaris
Phvul.007G080800 Phaseolus vulgaris
Phvul.008G056500 Phaseolus vulgaris
Phvul.010G013800 Phaseolus vulgaris
Potri.002G067100 Populus trichocarpa
Potri.002G238600 Populus trichocarpa
Potri.005G193100 Populus trichocarpa
Potri.014G178300 Populus trichocarpa
Pp3c10_2210 Physcomitrium patens
Pp3c26_4700 Physcomitrium patens
Pp3c2_18500 Physcomitrium patens
Pp3c4_26740 Physcomitrium patens
Pp3c9_1480 Physcomitrium patens
PRCOL_00000187 Prasinoderma coloniale
Prupe.6G357600 Prunus persica
Prupe.8G032700 Prunus persica
Prupe.8G206600 Prunus persica
Psat3g105000 Pisum sativum
Psat6g200840 Pisum sativum
Psat6g238240 Pisum sativum
Psat7g232480 Pisum sativum
PSO017G6092 Papaver somniferum
PSO063G6246 Papaver somniferum
PSO357G0197 Papaver somniferum
PSO832G3285 Papaver somniferum
QL01p050680 Quercus lobata
QL01p050691 Quercus lobata
QL02p038960 Quercus lobata
QL02p038981 Quercus lobata
QL09p044535 Quercus lobata
QL09p044550 Quercus lobata
RcHm_v2.0_Chr1g0318821 Rosa chinensis
RcHm_v2.0_Chr1g0318831 Rosa chinensis
RcHm_v2.0_Chr1g0346331 Rosa chinensis
RcHm_v2.0_Chr3g0448421 Rosa chinensis
RcHm_v2.0_Chr5g0051691 Rosa chinensis
RcHm_v2.0_Chr6g0275171 Rosa chinensis
RcHm_v2.0_Chr6g0285231 Rosa chinensis
RcHm_v2.0_Chr6g0285381 Rosa chinensis
RcHm_v2.0_Chr7g0235061 Rosa chinensis
RcHm_v2.0_Chr7g0235071 Rosa chinensis
Rhsim09G0130900 Rhododendron simsii
Sabra02G0053200 Salix brachista
Sabra05G0147600 Salix brachista
Sabra06G0135100 Salix brachista
Sabra14G0136600 Salix brachista
Sabra14G0138500 Salix brachista
SalBow2G3184 Salvia bowleyana
SalBow3G3566 Salvia bowleyana
SalBow3G4149 Salvia bowleyana
SalBow4G2375 Salvia bowleyana
SalBow6G4441 Salvia bowleyana
SalBow6G6447 Salvia bowleyana
SalBow6G7204 Salvia bowleyana
SalBow7G1553 Salvia bowleyana
SalBow7G2140 Salvia bowleyana
Sc02g0003980 Simmondsia chinensis
Sc05g0002370 Simmondsia chinensis
Sc09g0001660 Simmondsia chinensis
Sc16g0010210 Simmondsia chinensis
Sc16g0010220 Simmondsia chinensis
Sed0002383 Sechium edule
Sed0022152 Sechium edule
Sed0022213 Sechium edule
Sed0022555 Sechium edule
SEGI_02555 Sequoiadendron giganteum
SEGI_15723 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05143 Striga asiatica
SGA_v2.0_scaffold122G33231 Striga asiatica
SGA_v2.0_scaffold152G36792 Striga asiatica
SGA_v2.0_scaffold198G41138 Striga asiatica
SGA_v2.0_scaffold1G00712 Striga asiatica
SGA_v2.0_scaffold20G09013 Striga asiatica
SGA_v2.0_scaffold256G45649 Striga asiatica
SGA_v2.0_scaffold29G12117 Striga asiatica
SGA_v2.0_scaffold392G50655 Striga asiatica
SGA_v2.0_scaffold3G01580 Striga asiatica
SGA_v2.0_scaffold48G18005 Striga asiatica
SHI31183 Sapria himalayana
SMO177G0010 Selaginella moellendorffii
SMO177G0016 Selaginella moellendorffii
SMO197G0088 Selaginella moellendorffii
SMO203G0099 Selaginella moellendorffii
SMO367G0381 Selaginella moellendorffii
Solyc04g051150.3 Solanum lycopersicum
Solyc04g071540.4 Solanum lycopersicum
Solyc06g007980.4 Solanum lycopersicum
Solyc09g061860.4 Solanum lycopersicum
Sopen04g022440 Solanum pennellii
Sopen04g027520 Solanum pennellii
Sopen06g002820 Solanum pennellii
Sopen09g024910 Solanum pennellii
Sp1g32510 Schrenkiella parvula
Sp3g05960 Schrenkiella parvula
TAR228G0003 Trochodendron aralioides
TAR362G0871 Trochodendron aralioides
TAR362G0935 Trochodendron aralioides
TAR381G0385 Trochodendron aralioides
TAR636G0361 Trochodendron aralioides
THA.LOC104802681 Tarenaya hassleriana
THA.LOC104803035 Tarenaya hassleriana
THA.LOC104818941 Tarenaya hassleriana
Thecc.01G229400 Theobroma cacao
Thecc.05G202400 Theobroma cacao
Thecc.05G202600 Theobroma cacao
Thecc.05G202800 Theobroma cacao
Thecc.08G153900 Theobroma cacao
Thecc.K0004400 Theobroma cacao
Thhalv10005442m.g Eutrema salsugineum
Thhalv10020288m.g Eutrema salsugineum
TPR.G17042 Trifolium pratense
TPR.G22159 Trifolium pratense
TPR.G5259 Trifolium pratense
TPR.G5601 Trifolium pratense
TWI31G1246 Tripterygium wilfordii
TWI34G1494 Tripterygium wilfordii
TWI75G1288 Tripterygium wilfordii
unitig_60.g25601 Utricularia gibba
unitig_62.g23553 Utricularia gibba
unitig_82.g27122 Utricularia gibba
unitig_82.g27123 Utricularia gibba
unitig_85.g27276 Utricularia gibba
vmacro01458 Vaccinium macrocarpon
vmacro02743 Vaccinium macrocarpon
vmacro10398 Vaccinium macrocarpon
vmacro11930 Vaccinium macrocarpon
VMungo0720G3164 Vigna mungo
VMungo1383G2718 Vigna mungo
Zm00001eb088910 Zea mays
Zm00001eb094880 Zea mays
Zm00001eb146680 Zea mays
Zm00001eb419440 Zea mays

User provided reference genes

Program Settings