Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p27790 Brassica napus
A05p19200 Brassica napus
A05p33030 Brassica napus
A06p02140 Brassica napus
A08p02470 Brassica napus
Aa31LG3G5830 Aethionema arabicum
Aa31LG8G3610 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3629 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis
Actinidia07399 Actinidia chinensis
Actinidia17502 Actinidia chinensis
Actinidia21724 Actinidia chinensis
Actinidia29898 Actinidia chinensis
Actinidia32112 Actinidia chinensis
Actinidia32113 Actinidia chinensis
Actinidia39767 Actinidia chinensis
Ah.01g017270 Amaranthus hybridus
Ah.09g230350 Amaranthus hybridus
Ah.14g083450 Amaranthus hybridus
Ah.16g103270 Amaranthus hybridus
AL1G60040 Arabidopsis lyrata
AL3G29300 Arabidopsis lyrata
AL58U10020 Arabidopsis lyrata
AL8G24420 Arabidopsis lyrata
Aqoxy7G01367 Aquilegia oxysepala
Aqoxy7G03959 Aquilegia oxysepala
Aqoxy7G03962 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.48KAL9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4E8AG2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HWT14V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P17D3X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QDN3CU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S5V11Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SHV8K3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SKCH66 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZHT6Z8 Arachis hypogaea
AT1G51980 Arabidopsis thaliana
AT3G16480 Arabidopsis thaliana
AT5G50340 Arabidopsis thaliana
ATR0705G065 Amborella trichopoda
ATR0705G162 Amborella trichopoda
ATR0772G211 Amborella trichopoda
Atru.chr1.3485 Acer truncatum
Atru.chr1.3554 Acer truncatum
Atru.chr7.1495 Acer truncatum
AUR62021363 Chenopodium quinoa
AUR62022239 Chenopodium quinoa
AUR62022240 Chenopodium quinoa
AUR62022260 Chenopodium quinoa
AUR62031953 Chenopodium quinoa
AUR62033275 Chenopodium quinoa
BcaB01g02899 Brassica carinata
BcaB01g06145 Brassica carinata
BcaB02g11031 Brassica carinata
BcaB04g17176 Brassica carinata
BcaB06g25751 Brassica carinata
BcaB06g26172 Brassica carinata
BcaC01g01298 Brassica carinata
BcaC01g04813 Brassica carinata
BcaC02g08434 Brassica carinata
BcaC05g28211 Brassica carinata
BcaC05g28872 Brassica carinata
BcaC08g43357 Brassica carinata
BcaC08g43960 Brassica carinata
BolC3t12570H Brassica oleracea
BolC3t15673H Brassica oleracea
BolC3t21357H Brassica oleracea
BolC5t33039H Brassica oleracea
BolC5t33732H Brassica oleracea
BolC6t35813H Brassica oleracea
BolC6t36525H Brassica oleracea
BraA03t11990Z Brassica rapa
BraA05t20826Z Brassica rapa
BraA05t22128Z Brassica rapa
BraA06t23425Z Brassica rapa
BraA08t32286Z Brassica rapa
C03p00090 Brassica napus
C03p33520 Brassica napus
C03p90360 Brassica napus
C04p54240 Brassica napus
C05p43090 Brassica napus
C05p49810 Brassica napus
C06p07210 Brassica napus
C06p13610 Brassica napus
CAN.G1143.24 Capsicum annuum
CAN.G1858.7 Capsicum annuum
CAN.G495.1 Capsicum annuum
CANSAT56G1501 Cannabis sativa
CANSAT56G2668 Cannabis sativa
CANSAT56G3045 Cannabis sativa
CANSAT56G3773 Cannabis sativa
CANSAT56G4024 Cannabis sativa
CARHR042150 Cardamine hirsuta
CARHR091690 Cardamine hirsuta
CARHR258160 Cardamine hirsuta
Carub.0001s4093 Capsella rubella
Carub.0003s1622 Capsella rubella
Carub.0008s1040 Capsella rubella
Ca_01173_v3 Cicer arietinum L.
Ca_17377_v3 Cicer arietinum L.
Ca_23278_v3 Cicer arietinum L.
Ca_23279_v3 Cicer arietinum L.
CBR_g39080 Chara braunii
CBR_g52747 Chara braunii
Cc04_g02430 Coffea canephora
Cc06_g10740 Coffea canephora
CDE02G0018 Ceratophyllum demersum
CDE02G2442 Ceratophyllum demersum
CDE05G0193 Ceratophyllum demersum
CDE05G2505 Ceratophyllum demersum
CDE06G0427 Ceratophyllum demersum
CDE06G1706 Ceratophyllum demersum
CDE06G1935 Ceratophyllum demersum
Cfa003153 Carpinus fangiana
Cfa003633 Carpinus fangiana
Cfa025785 Carpinus fangiana
Ciclev10008040m.g Citrus clementina
Ciclev10025165m.g Citrus clementina
Ciclev10025419m.g Citrus clementina
CiPaw.01G230000 Carya illinoinensis
CiPaw.01G230100 Carya illinoinensis
CiPaw.02G144800 Carya illinoinensis
CiPaw.03G221400 Carya illinoinensis
ClCG07G013390 Citrullus lanatus
ClCG07G013420 Citrullus lanatus
ClCG07G013460 Citrullus lanatus
ClCG11G001960 Citrullus lanatus
COL.COLO4_18276 Corchorus olitorius
COL.COLO4_30533 Corchorus olitorius
COL.COLO4_30535 Corchorus olitorius
Cpa.g.c44864 Carica papaya
Cpa.g.sc25.29 Carica papaya
Cpa.g.sc25.35 Carica papaya
Cpa.g.sc25.37 Carica papaya
Cpa.g.sc2949.1 Carica papaya
Cpa.g.sc78.41 Carica papaya
Cre07.g317908 Chlamydomonas reinhardtii
Cre12.g509750 Chlamydomonas reinhardtii
Cre17.g722800 Chlamydomonas reinhardtii
CsaV3_2G001700 Cucumis sativus L.
CsaV3_3G023430 Cucumis sativus L.
CsaV3_3G023470 Cucumis sativus L.
CsaV3_5G013640 Cucumis sativus L.
CsaV3_7G011580 Cucumis sativus L.
CSS0007570 Camellia sinensis var. sinensis
CSS0010300 Camellia sinensis var. sinensis
CSS0041737 Camellia sinensis var. sinensis
CSS0047870 Camellia sinensis var. sinensis
CSS0049032 Camellia sinensis var. sinensis
DCAR_007591 Daucus carota
DCAR_022720 Daucus carota
DCAR_028640 Daucus carota
Dinv30424 Davidia involucrata
Dinv36710 Davidia involucrata
Dinv42270 Davidia involucrata
Duzib150G0629 Durio zibethinus
Duzib168G1066 Durio zibethinus
Duzib187G0818 Durio zibethinus
Duzib192G0923 Durio zibethinus
Duzib235G0146 Durio zibethinus
ECA232G1252 Erigeron canadensis
ECA236G0631 Erigeron canadensis
EL10Ac8g18349 Beta vulgaris
EL10Ac9g21183 Beta vulgaris
Eucgr.C03704 Eucalyptus grandis
Eucgr.F03085 Eucalyptus grandis
Eucgr.G00548 Eucalyptus grandis
Eucgr.J02692 Eucalyptus grandis
Eucgr.J02926 Eucalyptus grandis
FAN02G0147 Fragaria x ananassa
FAN03G3216 Fragaria x ananassa
FAN05G0851 Fragaria x ananassa
FAN05G3498 Fragaria x ananassa
FAN09G3512 Fragaria x ananassa
FAN14G2891 Fragaria x ananassa
FAN14G3013 Fragaria x ananassa
FAN19G1685 Fragaria x ananassa
FAN23G2765 Fragaria x ananassa
FAN26G1494 Fragaria x ananassa
FAN26G2207 Fragaria x ananassa
FAN28G0225 Fragaria x ananassa
FvH4_1g06540 Fragaria vesca
FvH4_6g32600 Fragaria vesca
FvH4_6g32620 Fragaria vesca
Glyma.05G225000 Glycine max
Glyma.07G014400 Glycine max
Glyma.08G031800 Glycine max
Glyma.08G199700 Glycine max
Glyma.08G199900 Glycine max
Glyma.08G248800 Glycine max
Glyma.09G138700 Glycine max
Glyma.13G353300 Glycine max
Glyma.13G353500 Glycine max
Glyma.15G020800 Glycine max
Glyma.15G021000 Glycine max
Glyma.18G179700 Glycine max
Glyma.20G021400 Glycine max
Gohir.A05G129875 Gossypium hirsutum
Gohir.A06G068900 Gossypium hirsutum
Gohir.A06G189900 Gossypium hirsutum
Gohir.A08G244000 Gossypium hirsutum
Gohir.A10G064700 Gossypium hirsutum
Gohir.A13G194800 Gossypium hirsutum
Gohir.D06G198300 Gossypium hirsutum
Gohir.D08G264900 Gossypium hirsutum
Gohir.D10G066200 Gossypium hirsutum
Gohir.D13G200500 Gossypium hirsutum
Gorai.004G282800 Gossypium raimondii
Gorai.010G231200 Gossypium raimondii
Gorai.011G070300 Gossypium raimondii
Gorai.013G229300 Gossypium raimondii
GSVIVG01015273001 Vitis vinifera
GSVIVG01016953001 Vitis vinifera
GSVIVG01016954001 Vitis vinifera
GSVIVG01016955001 Vitis vinifera
GSVIVG01021441001 Vitis vinifera
HanXRQChr05g0139791 Helianthus annuus
HanXRQChr06g0172091 Helianthus annuus
HanXRQChr10g0319011 Helianthus annuus
HanXRQChr12g0355221 Helianthus annuus
HanXRQChr17g0559621 Helianthus annuus
Haze_15866 Corylus avellana
Haze_15867 Corylus avellana
Haze_15869 Corylus avellana
Haze_15870 Corylus avellana
Haze_15873 Corylus avellana
Haze_15874 Corylus avellana
Haze_25849 Corylus avellana
Hma1.2p1_0012F.1_g007510 Hydrangea macrophylla
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla
Hma1.2p1_2337F.1_g320220 Hydrangea macrophylla
HPP92_000534 Vanilla planifolia
HPP92_000543 Vanilla planifolia
HPP92_000544 Vanilla planifolia
HPP92_003950 Vanilla planifolia
HPP92_019997 Vanilla planifolia
HPP92_023076 Vanilla planifolia
Hund07630 Selenicereus undatus
Hund09070 Selenicereus undatus
Lalb_Chr01g0013211 Lupinus albus
Lalb_Chr04g0262991 Lupinus albus
Lalb_Chr04g0263001 Lupinus albus
Lalb_Chr05g0223421 Lupinus albus
Lalb_Chr05g0223431 Lupinus albus
Lalb_Chr05g0223441 Lupinus albus
Lalb_Chr05g0223451 Lupinus albus
Lalb_Chr09g0331671 Lupinus albus
Lalb_Chr24g0396201 Lupinus albus
Lalb_Chr25g0280441 Lupinus albus
Lj3g0004043 Lotus japonicus
Lj3g0020598 Lotus japonicus
Lj3g0025825 Lotus japonicus
Lj4g0003479 Lotus japonicus
Lj7A668T77 Lonicera japonica
Lj9C514G19 Lonicera japonica
Lsat_1_v5_gn_1_46300 Lactuca sativa
Lsat_1_v5_gn_1_63401 Lactuca sativa
Lsat_1_v5_gn_3_93420 Lactuca sativa
Lsat_1_v5_gn_4_98041 Lactuca sativa
Lsat_1_v5_gn_5_146360 Lactuca sativa
Lsat_1_v5_gn_8_88241 Lactuca sativa
Lsat_1_v5_gn_9_94461 Lactuca sativa
Manes.03G029000 Manihot esculenta
Manes.04G135300 Manihot esculenta
Manes.11G031600 Manihot esculenta
Manes.11G031800 Manihot esculenta
Mapoly0008s0091 Marchantia polymorpha
Mapoly0028s0022 Marchantia polymorpha
MBI01_g10304_MAGBIO Magnolia biondii
MBI02_g35318_MAGBIO Magnolia biondii
MBI04_g06994_MAGBIO Magnolia biondii
MBI09_g26162_MAGBIO Magnolia biondii
MBI09_g34769_MAGBIO Magnolia biondii
MBI09_g37939_MAGBIO Magnolia biondii
MCO02G474 Micromonas commoda
MCO04G286 Micromonas commoda
MCO11G214 Micromonas commoda
MD02G1068800 Malus domestica
MD09G1200100 Malus domestica
MD17G1180500 Malus domestica
MD17G1181200 Malus domestica
Medtr2g100640 Medicago truncatula
Medtr8g014660 Medicago truncatula
Medtr8g014670 Medicago truncatula
Medtr8g102230 Medicago truncatula
MELO3C004605.2 Cucumis melo
MELO3C013008.2 Cucumis melo
MELO3C013011.2 Cucumis melo
Migut.I00963 Erythranthe guttata
Migut.J01080 Erythranthe guttata
Migut.K00559 Erythranthe guttata
MSTRG.19543 Avicennia marina
MSTRG.6029 Avicennia marina
Nitab4.5_0000012g0080 Nicotiana tabacum
Nitab4.5_0000566g0290 Nicotiana tabacum
Nitab4.5_0004969g0080 Nicotiana tabacum
Nitab4.5_0005085g0040 Nicotiana tabacum
Nitab4.5_0006787g0020 Nicotiana tabacum
Nitab4.5_0008724g0020 Nicotiana tabacum
Nitab4.5_0010416g0020 Nicotiana tabacum
Nitab4.5_0010416g0040 Nicotiana tabacum
Nn3g17934 Nelumbo nucifera
Nn8g39015 Nelumbo nucifera
Nn8g39020 Nelumbo nucifera
Oeu000339.1 Olea europaea
Oeu021462.4 Olea europaea
Oeu036248.1 Olea europaea
Oeu043914.1 Olea europaea
Oeu063750.1 Olea europaea
Os01g0191500 Oryza sativa ssp. japonica
Os01g0739000 Oryza sativa ssp. japonica
Os01g0966300 Oryza sativa ssp. japonica
Os05g0524300 Oryza sativa ssp. japonica
Os06g0151600 Oryza sativa ssp. japonica
Peaxi162Scf00038g01146 Petunia axillaris
Peaxi162Scf00298g00106 Petunia axillaris
Peaxi162Scf00944g00143 Petunia axillaris
PGR102G0054 Punica granatum
PGR102G0501 Punica granatum
PGR102G1644 Punica granatum
PGR142G2267 Punica granatum
PGSC0003DMG400000289 Solanum tuberosum
PGSC0003DMG400002521 Solanum tuberosum
Phvul.002G306900 Phaseolus vulgaris
Phvul.005G165000 Phaseolus vulgaris
Phvul.005G165200 Phaseolus vulgaris
Phvul.010G143800 Phaseolus vulgaris
Phvul.010G144000 Phaseolus vulgaris
Potri.001G191100 Populus trichocarpa
Potri.001G191200 Populus trichocarpa
Potri.008G193200 Populus trichocarpa
Potri.010G036700 Populus trichocarpa
Pp3c11_12620 Physcomitrium patens
Pp3c13_21610 Physcomitrium patens
Pp3c1_36770 Physcomitrium patens
Pp3c3_11990 Physcomitrium patens
Pp3c3_35660 Physcomitrium patens
Pp3c4_13680 Physcomitrium patens
PRCOL_00000595 Prasinoderma coloniale
PRCOL_00001245 Prasinoderma coloniale
Prupe.3G056500 Prunus persica
Prupe.3G056700 Prunus persica
Prupe.7G216900 Prunus persica
Psat4g196800 Pisum sativum
Psat4g196840 Pisum sativum
Psat5g239480 Pisum sativum
Psat5g295200 Pisum sativum
Psat5g295400 Pisum sativum
Psat7g018480 Pisum sativum
PSO063G6154 Papaver somniferum
PSO210G0811 Papaver somniferum
PSO210G5872 Papaver somniferum
PSO478G0947 Papaver somniferum
PSO675G5297 Papaver somniferum
PSO782G0993 Papaver somniferum
PSO832G1422 Papaver somniferum
QL02p040516 Quercus lobata
QL05p019057 Quercus lobata
QL05p019106 Quercus lobata
QL08p015078 Quercus lobata
RcHm_v2.0_Chr2g0092291 Rosa chinensis
RcHm_v2.0_Chr2g0141051 Rosa chinensis
RcHm_v2.0_Chr2g0141071 Rosa chinensis
RcHm_v2.0_Chr2g0141091 Rosa chinensis
RcHm_v2.0_Chr2g0141101 Rosa chinensis
Rhsim03G0235900 Rhododendron simsii
Rhsim05G0029300 Rhododendron simsii
Rhsim08G0228700 Rhododendron simsii
Sabra01G0150400 Salix brachista
Sabra01G0150500 Salix brachista
SalBow1G3870 Salvia bowleyana
SalBow2G1072 Salvia bowleyana
SalBow6G2217 Salvia bowleyana
SalBow6G2799 Salvia bowleyana
SalBow8G0867 Salvia bowleyana
Sc12g0010100 Simmondsia chinensis
Sc14g0000450 Simmondsia chinensis
Sc18g0001630 Simmondsia chinensis
Sed0006591 Sechium edule
Sed0010640 Sechium edule
Sed0014109 Sechium edule
Sed0017749 Sechium edule
SEGI_08653 Sequoiadendron giganteum
SEGI_18109 Sequoiadendron giganteum
SEGI_27909 Sequoiadendron giganteum
SEGI_29817 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05175 Striga asiatica
SGA_v2.0_scaffold265G46056 Striga asiatica
SGA_v2.0_scaffold45G16999 Striga asiatica
SGA_v2.0_scaffold62G21567 Striga asiatica
SHI11131 Sapria himalayana
SMO116G0483 Selaginella moellendorffii
SMO146G0024 Selaginella moellendorffii
SMO146G0193 Selaginella moellendorffii
SMO173G0016 Selaginella moellendorffii
SMO173G0029 Selaginella moellendorffii
SMO173G0075 Selaginella moellendorffii
SMO173G0086 Selaginella moellendorffii
SMO173G0090 Selaginella moellendorffii
SMO180G0019 Selaginella moellendorffii
SMO184G0005 Selaginella moellendorffii
SMO184G0012 Selaginella moellendorffii
SMO195G0018 Selaginella moellendorffii
SMO195G0020 Selaginella moellendorffii
SMO337G0115 Selaginella moellendorffii
Solyc03g121120.4 Solanum lycopersicum
Solyc05g026150.1 Solanum lycopersicum
Solyc05g150135.1 Solanum lycopersicum
Solyc12g008630.2 Solanum lycopersicum
Sopen03g039950 Solanum pennellii
Sopen05g022370 Solanum pennellii
Sopen05g022400 Solanum pennellii
Sopen12g003570 Solanum pennellii
Sp1g38620 Schrenkiella parvula
Sp3g14830 Schrenkiella parvula
Sp6g12440 Schrenkiella parvula
TAR383G0031 Trochodendron aralioides
TAR626G0748 Trochodendron aralioides
TAR626G1508 Trochodendron aralioides
TAR626G1659 Trochodendron aralioides
TAR636G2301 Trochodendron aralioides
TAR636G3252 Trochodendron aralioides
THA.LOC104803142 Tarenaya hassleriana
THA.LOC104805926 Tarenaya hassleriana
THA.LOC104810541 Tarenaya hassleriana
THA.LOC104817949 Tarenaya hassleriana
Thecc.06G102000 Theobroma cacao
Thecc.06G102200 Theobroma cacao
Thecc.09G097200 Theobroma cacao
Thhalv10011412m.g Eutrema salsugineum
Thhalv10013055m.g Eutrema salsugineum
Thhalv10020561m.g Eutrema salsugineum
TPR.G15141 Trifolium pratense
TPR.G15143 Trifolium pratense
TPR.G18952 Trifolium pratense
TPR.G23444 Trifolium pratense
TPR.G6578 Trifolium pratense
TWI18G0587 Tripterygium wilfordii
TWI32G1156 Tripterygium wilfordii
TWI63G1768 Tripterygium wilfordii
TWI75G1042 Tripterygium wilfordii
unitig_0.g598 Utricularia gibba
unitig_60.g25480 Utricularia gibba
unitig_88.g27600 Utricularia gibba
vmacro06259 Vaccinium macrocarpon
vmacro10832 Vaccinium macrocarpon
vmacro18841 Vaccinium macrocarpon
VMungo0251G1649 Vigna mungo
VMungo0331G0003 Vigna mungo
VMungo0331G1514 Vigna mungo
VMungo1080G0220 Vigna mungo
VMungo1080G1498 Vigna mungo
VMungo1080G1801 Vigna mungo
Zm00001eb040430 Zea mays
Zm00001eb095460 Zea mays
Zm00001eb114840 Zea mays
Zm00001eb121370 Zea mays
Zm00001eb140090 Zea mays
Zm00001eb185500 Zea mays
Zm00001eb270700 Zea mays
Zm00001eb293540 Zea mays
Zm00001eb362360 Zea mays
Zm00001eb392200 Zea mays
Zm00001eb421300 Zea mays

User provided reference genes

Program Settings