Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p34070 Brassica napus
A05p05800 Brassica napus
A06p18830 Brassica napus
A06p34640 Brassica napus
A09p53330 Brassica napus
Aa31LG10G15340 Aethionema arabicum
Aa31LG11G3140 Aethionema arabicum
Aa31LG1G27270 Aethionema arabicum
Aa31LG4G17450 Aethionema arabicum
Actinidia10035 Actinidia chinensis
Actinidia20927 Actinidia chinensis
Actinidia27392 Actinidia chinensis
Actinidia32862 Actinidia chinensis
Actinidia34110 Actinidia chinensis
Ah.12g057250 Amaranthus hybridus
AL4G45030 Arabidopsis lyrata
AL5G28450 Arabidopsis lyrata
AL5G43530 Arabidopsis lyrata
AL6G35030 Arabidopsis lyrata
Aqoxy2G03221 Aquilegia oxysepala
Aqoxy7G00364 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2XHF5V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4U3X1G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CR9H3C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D1503X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E67BSD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E9V3WH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1KWT2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FT21TK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G2NW0H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6FI3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JTU5B9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MU1UQI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S827EG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T8W31W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XJXR2L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y2T8AX Arachis hypogaea
AT2G45820 Arabidopsis thaliana
AT3G48940 Arabidopsis thaliana
AT3G61260 Arabidopsis thaliana
AT5G23750 Arabidopsis thaliana
ATR0680G228 Amborella trichopoda
Atru.chr1.461 Acer truncatum
Atru.chr5.476 Acer truncatum
Atru.chr9.2203 Acer truncatum
AUR62010609 Chenopodium quinoa
AUR62015367 Chenopodium quinoa
AUR62015988 Chenopodium quinoa
AUR62017251 Chenopodium quinoa
AUR62021196 Chenopodium quinoa
AUR62033318 Chenopodium quinoa
AUR62033341 Chenopodium quinoa
BcaB01g00766 Brassica carinata
BcaB02g09004 Brassica carinata
BcaB04g19848 Brassica carinata
BcaC02g07057 Brassica carinata
BcaC02g07058 Brassica carinata
BcaC02g07061 Brassica carinata
BcaC02g12178 Brassica carinata
BcaC07g42667 Brassica carinata
BcaNung01842 Brassica carinata
BolC4t22295H Brassica oleracea
BolC4t28685H Brassica oleracea
BolC8t51195H Brassica oleracea
BolC9t53668H Brassica oleracea
BraA04t18868Z Brassica rapa
BraA05t19546Z Brassica rapa
BraA06t24965Z Brassica rapa
BraA06t26391Z Brassica rapa
BraA09t36324Z Brassica rapa
BraA09t40758Z Brassica rapa
C04p06740 Brassica napus
C04p71870 Brassica napus
C08p23900 Brassica napus
C08p36130 Brassica napus
CAN.G1153.1 Capsicum annuum
CAN.G265.8 Capsicum annuum
CAN.G28.22 Capsicum annuum
CAN.G490.27 Capsicum annuum
CAN.G78.46 Capsicum annuum
CAN.G859.13 Capsicum annuum
CANSAT21G0046 Cannabis sativa
CANSAT21G1207 Cannabis sativa
CANSAT21G1680 Cannabis sativa
CANSAT56G1483 Cannabis sativa
CARHR048120 Cardamine hirsuta
CARHR141090 Cardamine hirsuta
CARHR157740 Cardamine hirsuta
CARHR171560 Cardamine hirsuta
CARHR189780 Cardamine hirsuta
Carub.0004s2852 Capsella rubella
Carub.0005s1512 Capsella rubella
Carub.0005s2792 Capsella rubella
Carub.0006s2150 Capsella rubella
Ca_07895_v3 Cicer arietinum L.
Ca_10773_v3 Cicer arietinum L.
Ca_17548_v3 Cicer arietinum L.
Ca_23655_v3 Cicer arietinum L.
Ca_24561_v3 Cicer arietinum L.
Cc02_g03020 Coffea canephora
Cc02_g37760 Coffea canephora
Cc08_g14390 Coffea canephora
CDE02G0883 Ceratophyllum demersum
CDE05G2268 Ceratophyllum demersum
CDE06G1471 Ceratophyllum demersum
CDE08G0970 Ceratophyllum demersum
Cfa003950 Carpinus fangiana
Cfa008315 Carpinus fangiana
Cfa012145 Carpinus fangiana
Ciclev10005899m.g Citrus clementina
Ciclev10022286m.g Citrus clementina
Ciclev10023664m.g Citrus clementina
CiPaw.01G058300 Carya illinoinensis
CiPaw.01G058400 Carya illinoinensis
CiPaw.03G106000 Carya illinoinensis
CiPaw.04G070800 Carya illinoinensis
CiPaw.11G138200 Carya illinoinensis
CiPaw.11G138300 Carya illinoinensis
CiPaw.12G095200 Carya illinoinensis
ClCG01G002930 Citrullus lanatus
ClCG05G001630 Citrullus lanatus
ClCG05G008030 Citrullus lanatus
ClCG09G012980 Citrullus lanatus
COL.COLO4_12682 Corchorus olitorius
COL.COLO4_14305 Corchorus olitorius
COL.COLO4_34428 Corchorus olitorius
Cpa.g.sc107.49 Carica papaya
Cpa.g.sc18.233 Carica papaya
CsaV3_3G009010 Cucumis sativus L.
CsaV3_3G017090 Cucumis sativus L.
CsaV3_3G050040 Cucumis sativus L.
CsaV3_5G003030 Cucumis sativus L.
CSS0001704 Camellia sinensis var. sinensis
CSS0011612 Camellia sinensis var. sinensis
CSS0022017 Camellia sinensis var. sinensis
CSS0024383 Camellia sinensis var. sinensis
CSS0041072 Camellia sinensis var. sinensis
CSS0047256 Camellia sinensis var. sinensis
CSS0048973 Camellia sinensis var. sinensis
DCAR_006917 Daucus carota
DCAR_009365 Daucus carota
DCAR_015934 Daucus carota
Dinv28445 Davidia involucrata
Dinv32460 Davidia involucrata
Dinv35211 Davidia involucrata
Dinv37663 Davidia involucrata
Dinv38963 Davidia involucrata
Duzib068G0884 Durio zibethinus
Duzib068G1236 Durio zibethinus
Duzib084G0801 Durio zibethinus
Duzib084G1237 Durio zibethinus
Duzib133G0349 Durio zibethinus
Duzib138G1208 Durio zibethinus
Duzib205G0129 Durio zibethinus
Duzib205G0771 Durio zibethinus
ECA232G2353 Erigeron canadensis
ECA233G1718 Erigeron canadensis
ECA233G2773 Erigeron canadensis
ECA236G2646 Erigeron canadensis
ECA238G1951 Erigeron canadensis
EL10Ac1g00540 Beta vulgaris
EL10Ac3g05646 Beta vulgaris
EL10Ac5g12774 Beta vulgaris
Eucgr.A02793 Eucalyptus grandis
Eucgr.A02794 Eucalyptus grandis
Eucgr.A02795 Eucalyptus grandis
Eucgr.D01872 Eucalyptus grandis
Eucgr.D02272 Eucalyptus grandis
Eucgr.D02273 Eucalyptus grandis
Eucgr.E00174 Eucalyptus grandis
Eucgr.E00569 Eucalyptus grandis
Eucgr.K00253 Eucalyptus grandis
FAN01G2346 Fragaria x ananassa
FAN01G2629 Fragaria x ananassa
FAN03G1371 Fragaria x ananassa
FAN03G1844 Fragaria x ananassa
FAN03G1967 Fragaria x ananassa
FAN04G2978 Fragaria x ananassa
FAN06G1600 Fragaria x ananassa
FAN06G3765 Fragaria x ananassa
FAN06G3827 Fragaria x ananassa
FAN06G5082 Fragaria x ananassa
FAN08G1944 Fragaria x ananassa
FAN10G0467 Fragaria x ananassa
FAN10G1499 Fragaria x ananassa
FAN13G0042 Fragaria x ananassa
FAN13G0217 Fragaria x ananassa
FAN18G3953 Fragaria x ananassa
FAN18G4102 Fragaria x ananassa
FvH4_5g01970 Fragaria vesca
FvH4_5g02000 Fragaria vesca
FvH4_7g13860 Fragaria vesca
FvH4_7g29430 Fragaria vesca
Glyma.01G218000 Glycine max
Glyma.03G013400 Glycine max
Glyma.05G205900 Glycine max
Glyma.07G073100 Glycine max
Glyma.08G012800 Glycine max
Glyma.09G139200 Glycine max
Glyma.09G261700 Glycine max
Glyma.10G236300 Glycine max
Glyma.11G025200 Glycine max
Glyma.16G189500 Glycine max
Glyma.18G230500 Glycine max
Glyma.20G158200 Glycine max
Gohir.A08G099500 Gossypium hirsutum
Gohir.A09G180900 Gossypium hirsutum
Gohir.A11G087200 Gossypium hirsutum
Gohir.A12G105300 Gossypium hirsutum
Gohir.A12G226800 Gossypium hirsutum
Gohir.D08G110900 Gossypium hirsutum
Gohir.D09G175700 Gossypium hirsutum
Gohir.D11G091600 Gossypium hirsutum
Gohir.D12G109200 Gossypium hirsutum
Gohir.D12G229200 Gossypium hirsutum
Gorai.004G118800 Gossypium raimondii
Gorai.005G131700 Gossypium raimondii
Gorai.006G197800 Gossypium raimondii
Gorai.007G097700 Gossypium raimondii
Gorai.008G118300 Gossypium raimondii
Gorai.008G245400 Gossypium raimondii
GSVIVG01019785001 Vitis vinifera
GSVIVG01026869001 Vitis vinifera
GSVIVG01028980001 Vitis vinifera
HanXRQChr04g0121491 Helianthus annuus
HanXRQChr07g0187071 Helianthus annuus
HanXRQChr07g0207031 Helianthus annuus
HanXRQChr09g0253541 Helianthus annuus
HanXRQChr14g0462451 Helianthus annuus
Haze_08887 Corylus avellana
Haze_08890 Corylus avellana
Haze_13718 Corylus avellana
Haze_15471 Corylus avellana
Hma1.2p1_0001F.1_g001530 Hydrangea macrophylla
Hma1.2p1_0270F.1_g108050 Hydrangea macrophylla
Hma1.2p1_1438F.1_g283380 Hydrangea macrophylla
Hma1.2p1_1943F.1_g308490 Hydrangea macrophylla
HPP92_005061 Vanilla planifolia
HPP92_014798 Vanilla planifolia
HPP92_022559 Vanilla planifolia
HPP92_026757 Vanilla planifolia
Hund11488 Selenicereus undatus
Hund11750 Selenicereus undatus
Hund14767 Selenicereus undatus
Hund16937 Selenicereus undatus
Hund27296 Selenicereus undatus
Lalb_Chr02g0141021 Lupinus albus
Lalb_Chr04g0256801 Lupinus albus
Lalb_Chr06g0161121 Lupinus albus
Lalb_Chr10g0097181 Lupinus albus
Lalb_Chr17g0339831 Lupinus albus
Lalb_Chr17g0339841 Lupinus albus
Lalb_Chr19g0126991 Lupinus albus
Lalb_Chr19g0130871 Lupinus albus
Lj1g0011057 Lotus japonicus
Lj1P997T28 Lonicera japonica
Lj2g0006316 Lotus japonicus
Lj3g0009811 Lotus japonicus
Lj4g0027499 Lotus japonicus
Lj5g0024531 Lotus japonicus
Lj8A25T66 Lonicera japonica
Lj9A581G69 Lonicera japonica
Lsat_1_v5_gn_2_131941 Lactuca sativa
Lsat_1_v5_gn_2_2380 Lactuca sativa
Lsat_1_v5_gn_6_5760 Lactuca sativa
Lsat_1_v5_gn_7_5021 Lactuca sativa
Lsat_1_v5_gn_8_8680 Lactuca sativa
Lsat_1_v5_gn_8_92960 Lactuca sativa
Lsat_1_v5_gn_9_56020 Lactuca sativa
Manes.01G063966 Manihot esculenta
Manes.01G259500 Manihot esculenta
Manes.05G036950 Manihot esculenta
Manes.06G146800 Manihot esculenta
Manes.14G026100 Manihot esculenta
MBI17_g42122_MAGBIO Magnolia biondii
MBI17_g45843_MAGBIO Magnolia biondii
MBI18_g09034_MAGBIO Magnolia biondii
MD01G1054900 Malus domestica
MD01G1055000 Malus domestica
MD01G1200400 Malus domestica
MD06G1078100 Malus domestica
MD07G1140300 Malus domestica
MD07G1268200 Malus domestica
MD14G1099100 Malus domestica
MD14G1099200 Malus domestica
Medtr1g100647 Medicago truncatula
Medtr5g010590 Medicago truncatula
Medtr7g076730 Medicago truncatula
Medtr8g031370 Medicago truncatula
Medtr8g097320 Medicago truncatula
MELO3C003314.2 Cucumis melo
MELO3C005653.2 Cucumis melo
MELO3C006119.2 Cucumis melo
MELO3C006904.2 Cucumis melo
Migut.B01719 Erythranthe guttata
Migut.E01110 Erythranthe guttata
Migut.F00343 Erythranthe guttata
Migut.F01121 Erythranthe guttata
Migut.N01434 Erythranthe guttata
MSTRG.13834 Avicennia marina
MSTRG.17254 Avicennia marina
MSTRG.27117 Avicennia marina
MSTRG.8455 Avicennia marina
MSTRG.8739 Avicennia marina
MSTRG.92 Avicennia marina
Nitab4.5_0000386g0140 Nicotiana tabacum
Nitab4.5_0000716g0040 Nicotiana tabacum
Nitab4.5_0001356g0060 Nicotiana tabacum
Nitab4.5_0001702g0020 Nicotiana tabacum
Nitab4.5_0001853g0010 Nicotiana tabacum
Nitab4.5_0002160g0100 Nicotiana tabacum
Nitab4.5_0004193g0010 Nicotiana tabacum
Nitab4.5_0008050g0060 Nicotiana tabacum
Nitab4.5_0008905g0020 Nicotiana tabacum
Nitab4.5_0009971g0020 Nicotiana tabacum
Nitab4.5_0011760g0010 Nicotiana tabacum
Nn1g01453 Nelumbo nucifera
Nn6g33509 Nelumbo nucifera
Oeu004517.1 Olea europaea
Oeu053287.2 Olea europaea
Oeu056254.1 Olea europaea
Os02g0642200 Oryza sativa ssp. japonica
Os02g0824500 Oryza sativa ssp. japonica
Os03g0111200 Oryza sativa ssp. japonica
Os04g0533300 Oryza sativa ssp. japonica
Peaxi162Scf00008g01926 Petunia axillaris
Peaxi162Scf00056g00025 Petunia axillaris
Peaxi162Scf00191g01313 Petunia axillaris
Peaxi162Scf00714g00019 Petunia axillaris
Peaxi162Scf01464g00027 Petunia axillaris
Peaxi162Scf01969g00025 Petunia axillaris
PGR031G2159 Punica granatum
PGR042G1643 Punica granatum
PGR042G2116 Punica granatum
PGR042G2856 Punica granatum
PGSC0003DMG400000157 Solanum tuberosum
PGSC0003DMG400003063 Solanum tuberosum
PGSC0003DMG400010267 Solanum tuberosum
PGSC0003DMG400014339 Solanum tuberosum
PGSC0003DMG400021639 Solanum tuberosum
Phvul.002G155800 Phaseolus vulgaris
Phvul.002G287608 Phaseolus vulgaris
Phvul.004G116700 Phaseolus vulgaris
Phvul.007G069500 Phaseolus vulgaris
Phvul.008G067400 Phaseolus vulgaris
Phvul.010G096300 Phaseolus vulgaris
Potri.001G107000 Populus trichocarpa
Potri.002G157700 Populus trichocarpa
Potri.003G124400 Populus trichocarpa
Potri.012G140800 Populus trichocarpa
Potri.012G140900 Populus trichocarpa
Potri.014G081300 Populus trichocarpa
Potri.015G143600 Populus trichocarpa
Pp3c11_14300 Physcomitrium patens
Pp3c12_4280 Physcomitrium patens
Pp3c3_21500 Physcomitrium patens
Pp3c7_18930 Physcomitrium patens
Prupe.2G164400 Prunus persica
Prupe.2G293900 Prunus persica
Prupe.5G095900 Prunus persica
Prupe.5G096200 Prunus persica
Psat2g182000 Pisum sativum
Psat3g110560 Pisum sativum
Psat4g202240 Pisum sativum
Psat6g199640 Pisum sativum
Psat7g034920 Pisum sativum
PSO478G5156 Papaver somniferum
PSO782G4247 Papaver somniferum
QL08p049449 Quercus lobata
QL09p014264 Quercus lobata
QL12p018126 Quercus lobata
QL93p1873_0031 Quercus lobata
RcHm_v2.0_Chr1g0354071 Rosa chinensis
RcHm_v2.0_Chr1g0377211 Rosa chinensis
RcHm_v2.0_Chr7g0198371 Rosa chinensis
RcHm_v2.0_Chr7g0198401 Rosa chinensis
Rhsim02G0225700 Rhododendron simsii
Rhsim03G0180600 Rhododendron simsii
Rhsim07G0017400 Rhododendron simsii
Rhsim07G0091900 Rhododendron simsii
Sabra01G0081100 Salix brachista
Sabra02G0125400 Salix brachista
Sabra03G0088000 Salix brachista
Sabra08G0015700 Salix brachista
Sabra11G0044600 Salix brachista
Sabra12G0105700 Salix brachista
Sabra14G0059200 Salix brachista
Sabra15G0153300 Salix brachista
SalBow1G8201 Salvia bowleyana
SalBow3G2842 Salvia bowleyana
SalBow4G0351 Salvia bowleyana
SalBow4G1466 Salvia bowleyana
SalBow5G3568 Salvia bowleyana
Sc13g0008620 Simmondsia chinensis
Sc22g0000180 Simmondsia chinensis
Sc26g0000970 Simmondsia chinensis
Sed0002472 Sechium edule
Sed0006230 Sechium edule
Sed0012916 Sechium edule
Sed0013625 Sechium edule
Sed0020113 Sechium edule
SEGI_25892 Sequoiadendron giganteum
SEGI_40527 Sequoiadendron giganteum
SGA_v2.0_scaffold113G31739 Striga asiatica
SGA_v2.0_scaffold11G05662 Striga asiatica
SGA_v2.0_scaffold277G46667 Striga asiatica
SGA_v2.0_scaffold60G21036 Striga asiatica
SGA_v2.0_scaffold799G53615 Striga asiatica
SMO116G0391 Selaginella moellendorffii
SMO348G0024 Selaginella moellendorffii
Solyc01g094370.3 Solanum lycopersicum
Solyc03g025850.3 Solanum lycopersicum
Solyc05g048820.3 Solanum lycopersicum
Solyc06g035900.1 Solanum lycopersicum
Solyc06g035910.1 Solanum lycopersicum
Solyc06g035920.3 Solanum lycopersicum
Solyc10g017540.4 Solanum lycopersicum
Sopen01g038160 Solanum pennellii
Sopen03g004660 Solanum pennellii
Sopen05g028150 Solanum pennellii
Sopen06g011690 Solanum pennellii
Sopen10g006350 Solanum pennellii
Sp2g23470 Schrenkiella parvula
Sp4g27890 Schrenkiella parvula
Sp5g02110 Schrenkiella parvula
Sp5g13110 Schrenkiella parvula
TAR374G0925 Trochodendron aralioides
TAR375G0668 Trochodendron aralioides
TAR629G1673 Trochodendron aralioides
TAR636G2976 Trochodendron aralioides
THA.LOC104798926 Tarenaya hassleriana
THA.LOC104802022 Tarenaya hassleriana
THA.LOC104817021 Tarenaya hassleriana
THA.LOC104817285 Tarenaya hassleriana
THA.LOC104821542 Tarenaya hassleriana
Thecc.01G362600 Theobroma cacao
Thecc.03G176100 Theobroma cacao
Thecc.03G176200 Theobroma cacao
Thecc.03G275500 Theobroma cacao
Thhalv10001646m.g Eutrema salsugineum
Thhalv10004940m.g Eutrema salsugineum
Thhalv10006246m.g Eutrema salsugineum
Thhalv10010917m.g Eutrema salsugineum
Thhalv10011156m.g Eutrema salsugineum
Thhalv10023740m.g Eutrema salsugineum
TPR.G12934 Trifolium pratense
TPR.G14344 Trifolium pratense
TPR.G1742 Trifolium pratense
TPR.G37804 Trifolium pratense
TPR.G4394 Trifolium pratense
TPR.G6636 Trifolium pratense
TPR.G6638 Trifolium pratense
TWI15G0423 Tripterygium wilfordii
TWI23G0114 Tripterygium wilfordii
TWI23G0948 Tripterygium wilfordii
TWI39G1206 Tripterygium wilfordii
TWI81G0463 Tripterygium wilfordii
unitig_0.g2483 Utricularia gibba
unitig_22.g5358 Utricularia gibba
unitig_37.g11963 Utricularia gibba
unitig_37.g12522 Utricularia gibba
unitig_46.g18785 Utricularia gibba
unitig_61.g26288 Utricularia gibba
unitig_61.g26395 Utricularia gibba
unitig_8.g3695 Utricularia gibba
unitig_8.g3805 Utricularia gibba
vmacro06683 Vaccinium macrocarpon
vmacro11306 Vaccinium macrocarpon
vmacro11307 Vaccinium macrocarpon
vmacro13298 Vaccinium macrocarpon
vmacro13642 Vaccinium macrocarpon
vmacro13643 Vaccinium macrocarpon
vmacro13946 Vaccinium macrocarpon
vmacro17190 Vaccinium macrocarpon
vmacro22735 Vaccinium macrocarpon
VMungo0331G0001 Vigna mungo
VMungo0331G1428 Vigna mungo
VMungo0464G0667 Vigna mungo
VMungo0720G0217 Vigna mungo
VMungo1215G0745 Vigna mungo
VMungo1383G2978 Vigna mungo
Zm00001eb000840 Zea mays
Zm00001eb075630 Zea mays
Zm00001eb248600 Zea mays
Zm00001eb427400 Zea mays

User provided reference genes

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