Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p20160 Brassica napus
A03p19920 Brassica napus
A04p27590 Brassica napus
A05p09800 Brassica napus
A06p16140 Brassica napus
A06p48290 Brassica napus
A07p41220 Brassica napus
A08p29580 Brassica napus
A10p30130 Brassica napus
Aa31LG5G21160 Aethionema arabicum
Aa31LG7G4430 Aethionema arabicum
Aa31LG9G12640 Aethionema arabicum
Aa31sc52G90 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1178 Anthoceros agrestis
Actinidia03902 Actinidia chinensis
Actinidia15415 Actinidia chinensis
Actinidia32056 Actinidia chinensis
Actinidia32057 Actinidia chinensis
Ah.05g166730 Amaranthus hybridus
Ah.11g039090 Amaranthus hybridus
Ah.15g090520 Amaranthus hybridus
AL1G32670 Arabidopsis lyrata
AL2G35680 Arabidopsis lyrata
AL4G32120 Arabidopsis lyrata
AL6G16310 Arabidopsis lyrata
AL8G18750 Arabidopsis lyrata
Aqoxy4G02684 Aquilegia oxysepala
Aqoxy5G01771 Aquilegia oxysepala
Aqoxy7G02907 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1T1RVQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.29VQUK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7M5QT5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.92CMUS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AUY1K1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FMT7AB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JG0IF7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SYM4DV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XIE7IS Arachis hypogaea
AT1G19950 Arabidopsis thaliana
AT1G75700 Arabidopsis thaliana
AT2G36020 Arabidopsis thaliana
AT5G42560 Arabidopsis thaliana
ATR0650G003 Amborella trichopoda
ATR0772G151 Amborella trichopoda
ATR0821G001 Amborella trichopoda
Atru.chr13.310 Acer truncatum
Atru.chr5.3203 Acer truncatum
Atru.chr8.1396 Acer truncatum
AUR62006267 Chenopodium quinoa
AUR62033837 Chenopodium quinoa
AUR62035744 Chenopodium quinoa
AUR62037037 Chenopodium quinoa
BcaB01g03861 Brassica carinata
BcaB02g09390 Brassica carinata
BcaB03g12888 Brassica carinata
BcaB03g12890 Brassica carinata
BcaB05g24934 Brassica carinata
BcaB06g28908 Brassica carinata
BcaB07g32013 Brassica carinata
BcaB07g32015 Brassica carinata
BcaC01g05676 Brassica carinata
BcaC02g07638 Brassica carinata
BcaC02g10770 Brassica carinata
BcaC02g11703 Brassica carinata
BcaC03g15615 Brassica carinata
BcaC05g25892 Brassica carinata
BcaC05g25893 Brassica carinata
BcaC06g31754 Brassica carinata
BcaC06g32347 Brassica carinata
BcaC06g32360 Brassica carinata
BcaC07g39011 Brassica carinata
BcaC08g47051 Brassica carinata
BcaC08g47052 Brassica carinata
BolC2t09328H Brassica oleracea
BolC3t14732H Brassica oleracea
BolC4t22860H Brassica oleracea
BolC4t24036H Brassica oleracea
BolC4t27987H Brassica oleracea
BolC5t30559H Brassica oleracea
BolC6t40003H Brassica oleracea
BolC8t49621H Brassica oleracea
BolC9t59799H Brassica oleracea
BraA02t07051Z Brassica rapa
BraA03t11243Z Brassica rapa
BraA04t18254Z Brassica rapa
BraA05t19932Z Brassica rapa
BraA06t24719Z Brassica rapa
BraA06t27698Z Brassica rapa
BraA07t31657Z Brassica rapa
BraA08t34896Z Brassica rapa
BraA10t45051Z Brassica rapa
C02p33770 Brassica napus
C03p23320 Brassica napus
C04p12160 Brassica napus
C04p25310 Brassica napus
C04p65090 Brassica napus
C05p18480 Brassica napus
C06p49640 Brassica napus
C08p19820 Brassica napus
C09p70540 Brassica napus
CAN.G1245.20 Capsicum annuum
CAN.G1925.6 Capsicum annuum
CAN.G311.19 Capsicum annuum
CAN.G574.35 Capsicum annuum
CANSAT25G0382 Cannabis sativa
CANSAT64G2106 Cannabis sativa
CANSAT64G2910 Cannabis sativa
CARHR020430 Cardamine hirsuta
CARHR069100 Cardamine hirsuta
CARHR130280 Cardamine hirsuta
CARHR181820 Cardamine hirsuta
CARHR207000 Cardamine hirsuta
Carub.0001s1946 Capsella rubella
Carub.0002s2254 Capsella rubella
Carub.0004s1777 Capsella rubella
Carub.0006s0517 Capsella rubella
Carub.0008s0646 Capsella rubella
Ca_09042_v3 Cicer arietinum L.
Ca_11719_v3 Cicer arietinum L.
Ca_13412_v3 Cicer arietinum L.
Ca_15486_v3 Cicer arietinum L.
CBR_g13055 Chara braunii
CBR_g50751 Chara braunii
Cc02_g16680 Coffea canephora
Cc06_g06360 Coffea canephora
Cc10_g01780 Coffea canephora
CDE02G0481 Ceratophyllum demersum
CDE05G2716 Ceratophyllum demersum
CDE05G3575 Ceratophyllum demersum
CDE11G0200 Ceratophyllum demersum
Cfa013939 Carpinus fangiana
Cfa016669 Carpinus fangiana
Ciclev10001859m.g Citrus clementina
Ciclev10012512m.g Citrus clementina
Ciclev10029985m.g Citrus clementina
Ciclev10030289m.g Citrus clementina
CiPaw.05G076000 Carya illinoinensis
CiPaw.07G151200 Carya illinoinensis
CiPaw.08G065600 Carya illinoinensis
CiPaw.09G018800 Carya illinoinensis
CiPaw.10G015300 Carya illinoinensis
ClCG02G004380 Citrullus lanatus
ClCG04G010360 Citrullus lanatus
ClCG05G018340 Citrullus lanatus
ClCG08G014390 Citrullus lanatus
ClCG10G018520 Citrullus lanatus
COL.COLO4_17239 Corchorus olitorius
COL.COLO4_26160 Corchorus olitorius
COL.COLO4_29614 Corchorus olitorius
Cpa.g.sc104.61 Carica papaya
Cpa.g.sc1059.5 Carica papaya
Cre01.g027900 Chlamydomonas reinhardtii
CsaV3_2G029430 Cucumis sativus L.
CsaV3_3G037730 Cucumis sativus L.
CsaV3_3G037740 Cucumis sativus L.
CsaV3_3G045780 Cucumis sativus L.
CsaV3_6G040980 Cucumis sativus L.
CsaV3_7G000730 Cucumis sativus L.
CSS0000540 Camellia sinensis var. sinensis
CSS0005030 Camellia sinensis var. sinensis
CSS0012850 Camellia sinensis var. sinensis
CSS0015407 Camellia sinensis var. sinensis
CSS0016407 Camellia sinensis var. sinensis
CSS0020617 Camellia sinensis var. sinensis
CSS0021812 Camellia sinensis var. sinensis
CSS0034356 Camellia sinensis var. sinensis
CSS0036384 Camellia sinensis var. sinensis
DCAR_003691 Daucus carota
DCAR_013431 Daucus carota
DCAR_013861 Daucus carota
DCAR_013862 Daucus carota
DCAR_016923 Daucus carota
DCAR_017473 Daucus carota
DCAR_020720 Daucus carota
DCAR_022929 Daucus carota
Dinv12322 Davidia involucrata
Dinv31745 Davidia involucrata
Dinv31834 Davidia involucrata
Dinv39508 Davidia involucrata
Duzib041G0626 Durio zibethinus
Duzib052G0046 Durio zibethinus
Duzib093G0009 Durio zibethinus
Duzib093G0370 Durio zibethinus
Duzib106G1100 Durio zibethinus
Duzib116G0879 Durio zibethinus
Duzib128G0667 Durio zibethinus
ECA233G2818 Erigeron canadensis
ECA233G5401 Erigeron canadensis
ECA238G0779 Erigeron canadensis
ECA238G1613 Erigeron canadensis
EL10Ac1g02287 Beta vulgaris
EL10Ac7g16815 Beta vulgaris
Eucgr.A02604 Eucalyptus grandis
Eucgr.F00600 Eucalyptus grandis
Eucgr.K02605 Eucalyptus grandis
FAN02G3707 Fragaria x ananassa
FAN05G1120 Fragaria x ananassa
FAN05G1916 Fragaria x ananassa
FAN09G3562 Fragaria x ananassa
FAN14G4688 Fragaria x ananassa
FAN15G0334 Fragaria x ananassa
FAN20G0480 Fragaria x ananassa
FAN27G0917 Fragaria x ananassa
FvH4_2g38590 Fragaria vesca
FvH4_6g19930 Fragaria vesca
Glyma.02G199000 Glycine max
Glyma.02G199100 Glycine max
Glyma.03G200400 Glycine max
Glyma.04G024900 Glycine max
Glyma.06G025000 Glycine max
Glyma.10G077900 Glycine max
Glyma.14G218400 Glycine max
Glyma.17G257500 Glycine max
Glyma.19G198000 Glycine max
Gohir.A01G202500 Gossypium hirsutum
Gohir.A04G061200 Gossypium hirsutum
Gohir.A05G187100 Gossypium hirsutum
Gohir.A06G004900 Gossypium hirsutum
Gohir.A09G136800 Gossypium hirsutum
Gohir.D01G192500 Gossypium hirsutum
Gohir.D04G095200 Gossypium hirsutum
Gohir.D05G190000 Gossypium hirsutum
Gohir.D06G000700 Gossypium hirsutum
Gohir.D09G132200 Gossypium hirsutum
Gohir.D11G336700 Gossypium hirsutum
Gorai.002G236300 Gossypium raimondii
Gorai.006G150800 Gossypium raimondii
Gorai.007G366700 Gossypium raimondii
Gorai.009G195300 Gossypium raimondii
Gorai.009G397900 Gossypium raimondii
Gorai.010G005100 Gossypium raimondii
GSVIVG01009889001 Vitis vinifera
GSVIVG01024117001 Vitis vinifera
GSVIVG01033929001 Vitis vinifera
HanXRQChr01g0025611 Helianthus annuus
HanXRQChr04g0106731 Helianthus annuus
HanXRQChr05g0146651 Helianthus annuus
HanXRQChr11g0322041 Helianthus annuus
HanXRQChr11g0322961 Helianthus annuus
HanXRQChr12g0367131 Helianthus annuus
HanXRQChr13g0386621 Helianthus annuus
HanXRQChr13g0398211 Helianthus annuus
HanXRQChr14g0430251 Helianthus annuus
Haze_02374 Corylus avellana
Haze_19680 Corylus avellana
Haze_22622 Corylus avellana
Hma1.2p1_0023F.1_g015420 Hydrangea macrophylla
Hma1.2p1_0064F.1_g034820 Hydrangea macrophylla
Hma1.2p1_0187F.1_g082160 Hydrangea macrophylla
Hma1.2p1_1442F.1_g283800 Hydrangea macrophylla
HPP92_003534 Vanilla planifolia
HPP92_007137 Vanilla planifolia
HPP92_007139 Vanilla planifolia
HPP92_023074 Vanilla planifolia
HPP92_025662 Vanilla planifolia
Hund03851 Selenicereus undatus
Hund05203 Selenicereus undatus
Hund19872 Selenicereus undatus
Hund24106 Selenicereus undatus
Lalb_Chr01g0017901 Lupinus albus
Lalb_Chr02g0154611 Lupinus albus
Lalb_Chr06g0172571 Lupinus albus
Lalb_Chr14g0369821 Lupinus albus
Lalb_Chr22g0354361 Lupinus albus
Lalb_Chr23g0266171 Lupinus albus
Lalb_Chr24g0398731 Lupinus albus
Lj1A1044T22 Lonicera japonica
Lj1A1046T47 Lonicera japonica
Lj1g0013142 Lotus japonicus
Lj1g0019692 Lotus japonicus
Lj4A26T47 Lonicera japonica
Lj5g0015161 Lotus japonicus
Lj5g0026535 Lotus japonicus
Lj5g0026558 Lotus japonicus
Lj9A389T63 Lonicera japonica
Lsat_1_v5_gn_0_641 Lactuca sativa
Lsat_1_v5_gn_1_57281 Lactuca sativa
Lsat_1_v5_gn_2_55280 Lactuca sativa
Lsat_1_v5_gn_2_8620 Lactuca sativa
Lsat_1_v5_gn_6_35101 Lactuca sativa
Lsat_1_v5_gn_8_30500 Lactuca sativa
Manes.05G148500 Manihot esculenta
Manes.05G148550 Manihot esculenta
Manes.08G031400 Manihot esculenta
Manes.09G048500 Manihot esculenta
Manes.18G014500 Manihot esculenta
Mapoly0036s0027 Marchantia polymorpha
MBI05_g15345_MAGBIO Magnolia biondii
MBI14_g20578_MAGBIO Magnolia biondii
MBI17_g00991_MAGBIO Magnolia biondii
MCO04G244 Micromonas commoda
MD02G1218000 Malus domestica
MD05G1114200 Malus domestica
MD08G1013900 Malus domestica
MD12G1036900 Malus domestica
MD14G1034500 Malus domestica
MD14G1035900 Malus domestica
MD15G1013400 Malus domestica
Medtr1g024930 Medicago truncatula
Medtr1g057940 Medicago truncatula
Medtr3g113790 Medicago truncatula
Medtr7g105810 Medicago truncatula
MELO3C003758.2 Cucumis melo
MELO3C009516.2 Cucumis melo
MELO3C009517.2 Cucumis melo
MELO3C011002.2 Cucumis melo
MELO3C033134.2 Cucumis melo
Migut.C00806 Erythranthe guttata
Migut.C00900 Erythranthe guttata
Migut.J00683 Erythranthe guttata
Migut.L01820 Erythranthe guttata
Migut.N03154 Erythranthe guttata
Migut.O00764 Erythranthe guttata
MSTRG.1200 Avicennia marina
MSTRG.19296 Avicennia marina
MSTRG.22338 Avicennia marina
MSTRG.25240 Avicennia marina
MSTRG.5884 Avicennia marina
Nitab4.5_0000020g0350 Nicotiana tabacum
Nitab4.5_0000192g0080 Nicotiana tabacum
Nitab4.5_0001287g0140 Nicotiana tabacum
Nitab4.5_0001540g0060 Nicotiana tabacum
Nitab4.5_0002950g0030 Nicotiana tabacum
Nitab4.5_0004677g0040 Nicotiana tabacum
Nitab4.5_0005468g0040 Nicotiana tabacum
Nitab4.5_0011425g0010 Nicotiana tabacum
Nn2g14259 Nelumbo nucifera
Nn2g14260 Nelumbo nucifera
Nn2g14261 Nelumbo nucifera
Nn5g29334 Nelumbo nucifera
Nn6g32367 Nelumbo nucifera
Nn6g34757 Nelumbo nucifera
Oeu007333.2 Olea europaea
Oeu009305.1 Olea europaea
Oeu010301.1 Olea europaea
Oeu010302.1 Olea europaea
Oeu054700.1 Olea europaea
Oeu060358.1 Olea europaea
Os03g0132300 Oryza sativa ssp. japonica
Os03g0250200 Oryza sativa ssp. japonica
Os04g0415200 Oryza sativa ssp. japonica
Os09g0533800 Oryza sativa ssp. japonica
Os10g0177400 Oryza sativa ssp. japonica
Os11g0156600 Oryza sativa ssp. japonica
Os12g0158600 Oryza sativa ssp. japonica
Peaxi162Scf00064g00066 Petunia axillaris
Peaxi162Scf00211g01735 Petunia axillaris
Peaxi162Scf00419g00813 Petunia axillaris
Peaxi162Scf00438g00624 Petunia axillaris
PGR004G1958 Punica granatum
PGR031G1713 Punica granatum
PGR083G1832 Punica granatum
PGR142G3387 Punica granatum
PGR142G3575 Punica granatum
PGSC0003DMG400003727 Solanum tuberosum
PGSC0003DMG400016386 Solanum tuberosum
PGSC0003DMG400028239 Solanum tuberosum
PGSC0003DMG400029421 Solanum tuberosum
Phvul.001G007300 Phaseolus vulgaris
Phvul.001G194060 Phaseolus vulgaris
Phvul.007G269700 Phaseolus vulgaris
Phvul.009G016200 Phaseolus vulgaris
Potri.002G023500 Populus trichocarpa
Potri.004G166800 Populus trichocarpa
Potri.005G237900 Populus trichocarpa
Potri.006G205300 Populus trichocarpa
Potri.016G072600 Populus trichocarpa
Pp3c10_4040 Physcomitrium patens
Pp3c14_4540 Physcomitrium patens
Pp3c16_15400 Physcomitrium patens
Pp3c1_21270 Physcomitrium patens
Pp3c5_7630 Physcomitrium patens
Pp3c6_23420 Physcomitrium patens
PRCOL_00002133 Prasinoderma coloniale
PRCOL_00006565 Prasinoderma coloniale
Prupe.1G366900 Prunus persica
Prupe.7G098200 Prunus persica
Prupe.8G158600 Prunus persica
Prupe.8G158700 Prunus persica
Psat3g030160 Pisum sativum
Psat5g013400 Pisum sativum
Psat6g003840 Pisum sativum
Psat6g083080 Pisum sativum
Psat6g083120 Pisum sativum
PSO063G6594 Papaver somniferum
PSO170G4274 Papaver somniferum
PSO170G5556 Papaver somniferum
PSO384G2952 Papaver somniferum
PSO541G1445 Papaver somniferum
PSO675G5117 Papaver somniferum
PSO700G0376 Papaver somniferum
PSO782G2291 Papaver somniferum
QL02p011393 Quercus lobata
QL05p019928 Quercus lobata
QL07p037481 Quercus lobata
RcHm_v2.0_Chr3g0475331 Rosa chinensis
RcHm_v2.0_Chr6g0302701 Rosa chinensis
Rhsim03G0067000 Rhododendron simsii
Rhsim06G0022100 Rhododendron simsii
Sabra02G0019100 Salix brachista
Sabra04G0111900 Salix brachista
Sabra05G0183900 Salix brachista
Sabra06G0158300 Salix brachista
Sabra16G0075300 Salix brachista
SalBow5G4992 Salvia bowleyana
Sc02g0008540 Simmondsia chinensis
Sc07g0005710 Simmondsia chinensis
Sc15g0005050 Simmondsia chinensis
Sc20g0006620 Simmondsia chinensis
Sed0003458 Sechium edule
Sed0006398 Sechium edule
Sed0009217 Sechium edule
Sed0012896 Sechium edule
Sed0019508 Sechium edule
Sed0024244 Sechium edule
Sed0025203 Sechium edule
Sed0025791 Sechium edule
SEGI_31185 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05910 Striga asiatica
SGA_v2.0_scaffold12G05970 Striga asiatica
SGA_v2.0_scaffold13G06661 Striga asiatica
SGA_v2.0_scaffold35G14022 Striga asiatica
SHI05654 Sapria himalayana
SHI22141 Sapria himalayana
SMO118G0263 Selaginella moellendorffii
SMO358G0459 Selaginella moellendorffii
Solyc01g007780.4 Solanum lycopersicum
Solyc04g081340.3 Solanum lycopersicum
Solyc10g082040.2 Solanum lycopersicum
Solyc12g089290.3 Solanum lycopersicum
Sopen01g003320 Solanum pennellii
Sopen04g034960 Solanum pennellii
Sopen10g032550 Solanum pennellii
Sopen12g031160 Solanum pennellii
Sp1g17730 Schrenkiella parvula
Sp2g06930 Schrenkiella parvula
Sp4g18280 Schrenkiella parvula
Sp5g30810 Schrenkiella parvula
Sp6g36580 Schrenkiella parvula
SpUn0014_0080 Schrenkiella parvula
SpUn0077_0010 Schrenkiella parvula
TAR376G1133 Trochodendron aralioides
TAR381G1524 Trochodendron aralioides
TAR628G1414 Trochodendron aralioides
TAR633G0407 Trochodendron aralioides
THA.LOC104799750 Tarenaya hassleriana
THA.LOC104806889 Tarenaya hassleriana
THA.LOC104813195 Tarenaya hassleriana
THA.LOC104813790 Tarenaya hassleriana
THA.LOC104816610 Tarenaya hassleriana
Thecc.02G068700 Theobroma cacao
Thecc.05G100800 Theobroma cacao
Thecc.08G042700 Theobroma cacao
Thhalv10003251m.g Eutrema salsugineum
Thhalv10008288m.g Eutrema salsugineum
Thhalv10015597m.g Eutrema salsugineum
Thhalv10017124m.g Eutrema salsugineum
Thhalv10019166m.g Eutrema salsugineum
TPR.G23363 Trifolium pratense
TPR.G34333 Trifolium pratense
TPR.G34543 Trifolium pratense
TPR.G8733 Trifolium pratense
TWI12G0248 Tripterygium wilfordii
TWI36G1498 Tripterygium wilfordii
TWI53G1338 Tripterygium wilfordii
TWI56G1108 Tripterygium wilfordii
TWI74G0560 Tripterygium wilfordii
TWI77G0471 Tripterygium wilfordii
TWI79G0762 Tripterygium wilfordii
unitig_26.g9144 Utricularia gibba
unitig_46.g17965 Utricularia gibba
unitig_749.g14203 Utricularia gibba
unitig_899.g15544 Utricularia gibba
vmacro07461 Vaccinium macrocarpon
vmacro21721 Vaccinium macrocarpon
VMungo0647G1276 Vigna mungo
VMungo1383G1166 Vigna mungo
Zm00001eb010740 Zea mays
Zm00001eb073940 Zea mays
Zm00001eb103550 Zea mays
Zm00001eb208370 Zea mays
Zm00001eb210700 Zea mays
Zm00001eb354340 Zea mays
Zm00001eb398540 Zea mays
Zm00001eb404150 Zea mays
Zm00001eb404160 Zea mays
Zm00001eb407080 Zea mays
Zm00001eb422010 Zea mays
Zm00001eb438790 Zea mays
Zm00001eb438800 Zea mays
Zm00001eb441760 Zea mays

User provided reference genes

Program Settings