Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17030 Brassica napus
A04p23190 Brassica napus
A07p07680 Brassica napus
A09p13830 Brassica napus
A09p66730 Brassica napus
A10p05430 Brassica napus
A10p06240 Brassica napus
Aa31LG1G7950 Aethionema arabicum
Aa31LG5G6300 Aethionema arabicum
Aa31sc29G30 Aethionema arabicum
Aa31sc380G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1448 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3793 Anthoceros agrestis
Actinidia15221 Actinidia chinensis
Actinidia15275 Actinidia chinensis
Actinidia15276 Actinidia chinensis
Actinidia20379 Actinidia chinensis
Actinidia21285 Actinidia chinensis
Actinidia22591 Actinidia chinensis
Actinidia22593 Actinidia chinensis
Actinidia22594 Actinidia chinensis
Actinidia29855 Actinidia chinensis
Actinidia32677 Actinidia chinensis
Actinidia38044 Actinidia chinensis
Ah.11g043430 Amaranthus hybridus
Ah.14g082160 Amaranthus hybridus
AL1G16890 Arabidopsis lyrata
AL1G54070 Arabidopsis lyrata
AL3G40160 Arabidopsis lyrata
AL4G25320 Arabidopsis lyrata
Aqoxy6G00907 Aquilegia oxysepala
Aqoxy6G00916 Aquilegia oxysepala
Aqoxy7G01632 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5J9JWM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.87Y2S4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9BJW6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FS85WP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IT7G4I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MV41TH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WW888L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YE1T8K Arachis hypogaea
AT1G06870 Arabidopsis thaliana
AT1G47310 Arabidopsis thaliana
AT2G30440 Arabidopsis thaliana
AT3G24590 Arabidopsis thaliana
ATR0225G040 Amborella trichopoda
ATR0315G121 Amborella trichopoda
ATR0584G047 Amborella trichopoda
ATR0584G273 Amborella trichopoda
ATR0716G073 Amborella trichopoda
ATR0733G003 Amborella trichopoda
Atru.chr1.438 Acer truncatum
Atru.chr13.1542 Acer truncatum
Atru.chr13.603 Acer truncatum
Atru.chr2.855 Acer truncatum
AUR62010971 Chenopodium quinoa
AUR62021480 Chenopodium quinoa
AUR62033883 Chenopodium quinoa
AUR62040083 Chenopodium quinoa
BcaB02g06765 Brassica carinata
BcaB03g13865 Brassica carinata
BcaB05g24343 Brassica carinata
BcaB06g26664 Brassica carinata
BcaB06g28366 Brassica carinata
BcaB07g33819 Brassica carinata
BcaC01g05998 Brassica carinata
BcaC02g08020 Brassica carinata
BcaC05g24656 Brassica carinata
BcaC06g35730 Brassica carinata
BcaC07g42043 Brassica carinata
BcaC07g42541 Brassica carinata
BcaC07g42545 Brassica carinata
BcaC08g42968 Brassica carinata
BolC3t14386H Brassica oleracea
BolC4t27442H Brassica oleracea
BolC5t29273H Brassica oleracea
BolC6t35339H Brassica oleracea
BolC7t41630H Brassica oleracea
BolC8t52624H Brassica oleracea
BraA04t17846Z Brassica rapa
BraA07t28561Z Brassica rapa
BraA09t42012Z Brassica rapa
BraA10t42807Z Brassica rapa
BraA10t42892Z Brassica rapa
C03p20090 Brassica napus
C04p59340 Brassica napus
C05p05010 Brassica napus
C06p02080 Brassica napus
C07p11570 Brassica napus
C08p50960 Brassica napus
CAN.G1529.6 Capsicum annuum
CAN.G371.81 Capsicum annuum
CAN.G424.6 Capsicum annuum
CANSAT25G1505 Cannabis sativa
CANSAT25G3859 Cannabis sativa
CANSAT25G3873 Cannabis sativa
CANSAT56G3680 Cannabis sativa
CARHR006550 Cardamine hirsuta
CARHR037310 Cardamine hirsuta
CARHR100870 Cardamine hirsuta
CARHR123880 Cardamine hirsuta
Carub.0001s0617 Capsella rubella
Carub.0001s3646 Capsella rubella
Carub.0003s2497 Capsella rubella
Carub.0004s1161 Capsella rubella
Ca_13316_v3 Cicer arietinum L.
Ca_15978_v3 Cicer arietinum L.
Ca_16599_v3 Cicer arietinum L.
Ca_17332_v3 Cicer arietinum L.
CBR_g45476 Chara braunii
Cc04_g13270 Coffea canephora
Cc06_g09800 Coffea canephora
Cc10_g03740 Coffea canephora
Cc10_g03750 Coffea canephora
CDE02G3118 Ceratophyllum demersum
CDE04G0703 Ceratophyllum demersum
CDE04G2705 Ceratophyllum demersum
CDE07G0795 Ceratophyllum demersum
CDE07G1628 Ceratophyllum demersum
CDE08G0402 Ceratophyllum demersum
Cfa003252 Carpinus fangiana
Cfa018110 Carpinus fangiana
Cfa018490 Carpinus fangiana
Cfa018492 Carpinus fangiana
Ciclev10001591m.g Citrus clementina
Ciclev10002560m.g Citrus clementina
Ciclev10008857m.g Citrus clementina
CiPaw.03G230400 Carya illinoinensis
CiPaw.04G163200 Carya illinoinensis
CiPaw.15G033200 Carya illinoinensis
CiPaw.15G066000 Carya illinoinensis
CiPaw.16G024600 Carya illinoinensis
CiPaw.16G050900 Carya illinoinensis
CiPaw.16G051000 Carya illinoinensis
ClCG05G019510 Citrullus lanatus
ClCG05G019520 Citrullus lanatus
ClCG06G008640 Citrullus lanatus
ClCG08G005950 Citrullus lanatus
ClCG08G015520 Citrullus lanatus
COL.COLO4_26433 Corchorus olitorius
COL.COLO4_26434 Corchorus olitorius
COL.COLO4_34846 Corchorus olitorius
COL.COLO4_36258 Corchorus olitorius
Cpa.g.sc23.94 Carica papaya
Cpa.g.sc357.10 Carica papaya
Cpa.g.sc357.9 Carica papaya
Cpa.g.sc43.112 Carica papaya
Cpa.g.sc64.137 Carica papaya
Cre07.g344350 Chlamydomonas reinhardtii
CsaV3_1G025510 Cucumis sativus L.
CsaV3_2G028260 Cucumis sativus L.
CsaV3_4G033950 Cucumis sativus L.
CsaV3_4G033960 Cucumis sativus L.
CsaV3_6G034140 Cucumis sativus L.
CSS0004889 Camellia sinensis var. sinensis
CSS0006181 Camellia sinensis var. sinensis
CSS0007824 Camellia sinensis var. sinensis
CSS0012371 Camellia sinensis var. sinensis
CSS0026490 Camellia sinensis var. sinensis
CSS0048007 Camellia sinensis var. sinensis
CSS0048313 Camellia sinensis var. sinensis
CSS0049073 Camellia sinensis var. sinensis
DCAR_012069 Daucus carota
DCAR_012762 Daucus carota
DCAR_020941 Daucus carota
Dinv14659 Davidia involucrata
Dinv27273 Davidia involucrata
Dinv36006 Davidia involucrata
Dinv36008 Davidia involucrata
Dinv36644 Davidia involucrata
Dinv39351 Davidia involucrata
Dinv39352 Davidia involucrata
Dinv41615 Davidia involucrata
Duzib041G0237 Durio zibethinus
Duzib093G1800 Durio zibethinus
Duzib116G0433 Durio zibethinus
Duzib168G2394 Durio zibethinus
ECA232G0918 Erigeron canadensis
ECA240G2794 Erigeron canadensis
EL10Ac1g01830 Beta vulgaris
EL10Ac8g18460 Beta vulgaris
Eucgr.C03817 Eucalyptus grandis
Eucgr.F00038 Eucalyptus grandis
Eucgr.F02384 Eucalyptus grandis
Eucgr.F02385 Eucalyptus grandis
FAN01G3118 Fragaria x ananassa
FAN05G2467 Fragaria x ananassa
FAN11G0345 Fragaria x ananassa
FAN11G3861 Fragaria x ananassa
FAN12G0464 Fragaria x ananassa
FAN15G1089 Fragaria x ananassa
FAN15G1316 Fragaria x ananassa
FAN15G2049 Fragaria x ananassa
FAN15G3587 Fragaria x ananassa
FAN19G0830 Fragaria x ananassa
FAN20G0232 Fragaria x ananassa
FAN20G1482 Fragaria x ananassa
FAN20G1724 Fragaria x ananassa
FAN22G1525 Fragaria x ananassa
FAN24G1749 Fragaria x ananassa
FAN27G0688 Fragaria x ananassa
FAN27G2514 Fragaria x ananassa
FvH4_1g04510 Fragaria vesca
FvH4_1g23960 Fragaria vesca
FvH4_2g27640 Fragaria vesca
FvH4_2g40680 Fragaria vesca
FvH4_2g40681 Fragaria vesca
FvH4_4g17810 Fragaria vesca
FvH4_4g22460 Fragaria vesca
Glyma.04G036000 Glycine max
Glyma.05G230600 Glycine max
Glyma.06G036100 Glycine max
Glyma.06G116300 Glycine max
Glyma.08G038100 Glycine max
Glyma.14G079267 Glycine max
Glyma.14G079333 Glycine max
Glyma.17G245800 Glycine max
Gohir.A01G118100 Gossypium hirsutum
Gohir.A05G023900 Gossypium hirsutum
Gohir.A05G237500 Gossypium hirsutum
Gohir.A06G015400 Gossypium hirsutum
Gohir.D01G106400 Gossypium hirsutum
Gohir.D05G025400 Gossypium hirsutum
Gohir.D05G202100 Gossypium hirsutum
Gohir.D05G239600 Gossypium hirsutum
Gohir.D06G013500 Gossypium hirsutum
Gorai.002G130600 Gossypium raimondii
Gorai.009G025500 Gossypium raimondii
Gorai.009G208000 Gossypium raimondii
Gorai.009G248500 Gossypium raimondii
Gorai.010G016100 Gossypium raimondii
GSVIVG01008821001 Vitis vinifera
GSVIVG01009580001 Vitis vinifera
GSVIVG01015377001 Vitis vinifera
HanXRQChr02g0046581 Helianthus annuus
HanXRQChr03g0061861 Helianthus annuus
HanXRQChr04g0104241 Helianthus annuus
HanXRQChr09g0239631 Helianthus annuus
HanXRQChr16g0508101 Helianthus annuus
Haze_17583 Corylus avellana
Haze_17584 Corylus avellana
Haze_18004 Corylus avellana
Haze_25760 Corylus avellana
Hma1.2p1_0260F.1_g104570 Hydrangea macrophylla
Hma1.2p1_0337F.1_g129160 Hydrangea macrophylla
Hma1.2p1_0337F.1_g129180 Hydrangea macrophylla
Hma1.2p1_0542F.1_g175060 Hydrangea macrophylla
Hma1.2p1_0727F.1_g209110 Hydrangea macrophylla
Hma1.2p1_1151F.1_g262013 Hydrangea macrophylla
Hma1.2p1_2208F.1_g317136 Hydrangea macrophylla
Hma1.2p1_3266F.1_g334690 Hydrangea macrophylla
HPP92_005260 Vanilla planifolia
HPP92_018728 Vanilla planifolia
HPP92_018731 Vanilla planifolia
HPP92_025166 Vanilla planifolia
Hund20787 Selenicereus undatus
Hund26212 Selenicereus undatus
Hund26614 Selenicereus undatus
Lalb_Chr04g0262041 Lupinus albus
Lalb_Chr08g0241191 Lupinus albus
Lalb_Chr09g0331211 Lupinus albus
Lalb_Chr09g0331871 Lupinus albus
Lalb_Chr11g0062481 Lupinus albus
Lalb_Chr22g0355261 Lupinus albus
Lalb_Chr22g0355271 Lupinus albus
Lalb_Chr23g0266841 Lupinus albus
Lalb_Chr23g0267161 Lupinus albus
Lj1g0010095 Lotus japonicus
Lj1g0012142 Lotus japonicus
Lj1P1067T11 Lonicera japonica
Lj4A49G68 Lonicera japonica
Lj4A49G69 Lonicera japonica
Lj4A777G65 Lonicera japonica
Lj4g0014256 Lotus japonicus
Lj5g0026644 Lotus japonicus
Lj7A652G68 Lonicera japonica
Lsat_1_v5_gn_1_19240 Lactuca sativa
Lsat_1_v5_gn_3_103941 Lactuca sativa
Lsat_1_v5_gn_3_103961 Lactuca sativa
Lsat_1_v5_gn_4_123141 Lactuca sativa
Lsat_1_v5_gn_4_37140 Lactuca sativa
Lsat_1_v5_gn_5_64901 Lactuca sativa
Lsat_1_v5_gn_6_82781 Lactuca sativa
Lsat_1_v5_gn_7_40700 Lactuca sativa
Lsat_1_v5_gn_8_160280 Lactuca sativa
Lsat_1_v5_gn_9_84000 Lactuca sativa
Manes.02G166900 Manihot esculenta
Manes.05G169200 Manihot esculenta
Manes.05G169300 Manihot esculenta
Manes.08G058100 Manihot esculenta
Manes.18G035350 Manihot esculenta
Manes.18G035401 Manihot esculenta
Mapoly0135s0009 Marchantia polymorpha
Mapoly0135s0011 Marchantia polymorpha
MBI11_g46997_MAGBIO Magnolia biondii
MBI16_g08581_MAGBIO Magnolia biondii
MBI16_g19898_MAGBIO Magnolia biondii
MCO03G497 Micromonas commoda
MD02G1044900 Malus domestica
MD02G1187600 Malus domestica
MD06G1221000 Malus domestica
MD08G1040300 Malus domestica
MD08G1040400 Malus domestica
MD15G1034800 Malus domestica
MD15G1034900 Malus domestica
MD15G1183400 Malus domestica
Medtr1g021180 Medicago truncatula
Medtr1g021220 Medicago truncatula
Medtr2g059220 Medicago truncatula
Medtr3g088435 Medicago truncatula
Medtr3g100960 Medicago truncatula
Medtr4g133850 Medicago truncatula
Medtr8g103470 Medicago truncatula
MELO3C010646.2 Cucumis melo
MELO3C010903.2 Cucumis melo
MELO3C016721.2 Cucumis melo
MELO3C016722.2 Cucumis melo
MELO3C025353.2 Cucumis melo
Migut.J01153 Erythranthe guttata
Migut.N01484 Erythranthe guttata
Migut.N02686 Erythranthe guttata
Migut.N02687 Erythranthe guttata
MSTRG.1321 Avicennia marina
MSTRG.19584 Avicennia marina
MSTRG.24316 Avicennia marina
MSTRG.24317 Avicennia marina
Nitab4.5_0000068g0160 Nicotiana tabacum
Nitab4.5_0000068g0170 Nicotiana tabacum
Nitab4.5_0000097g0180 Nicotiana tabacum
Nitab4.5_0002904g0060 Nicotiana tabacum
Nitab4.5_0008909g0010 Nicotiana tabacum
Nitab4.5_0008935g0010 Nicotiana tabacum
Nitab4.5_0008935g0020 Nicotiana tabacum
Nitab4.5_0009314g0040 Nicotiana tabacum
Nn2g11716 Nelumbo nucifera
Nn5g28421 Nelumbo nucifera
Nn5g29377 Nelumbo nucifera
Nn5g29386 Nelumbo nucifera
Nn8g39142 Nelumbo nucifera
Oeu000373.1 Olea europaea
Oeu006159.1 Olea europaea
Oeu009576.1 Olea europaea
Oeu013429.1 Olea europaea
Oeu013430.1 Olea europaea
Oeu028456.1 Olea europaea
Os02g0267000 Oryza sativa ssp. japonica
Os03g0765100 Oryza sativa ssp. japonica
Os03g0765200 Oryza sativa ssp. japonica
Os09g0453400 Oryza sativa ssp. japonica
Peaxi162Scf00231g00024 Petunia axillaris
Peaxi162Scf00546g00020 Petunia axillaris
Peaxi162Scf01514g00022 Petunia axillaris
Peaxi162Scf01514g00030 Petunia axillaris
PGR031G0097 Punica granatum
PGR031G1589 Punica granatum
PGR031G2154 Punica granatum
PGR044G0880 Punica granatum
PGR083G1077 Punica granatum
PGR102G0541 Punica granatum
PGSC0003DMG400000378 Solanum tuberosum
PGSC0003DMG401011681 Solanum tuberosum
PGSC0003DMG402011681 Solanum tuberosum
Phvul.001G018600 Phaseolus vulgaris
Phvul.001G096700 Phaseolus vulgaris
Phvul.002G312800 Phaseolus vulgaris
Phvul.009G062100 Phaseolus vulgaris
Phvul.009G128400 Phaseolus vulgaris
Potri.002G079600 Populus trichocarpa
Potri.006G157900 Populus trichocarpa
Potri.014G036300 Populus trichocarpa
Potri.014G036400 Populus trichocarpa
Potri.018G081800 Populus trichocarpa
Pp3c20_9240 Physcomitrium patens
Pp3c23_14790 Physcomitrium patens
Pp3c23_7740 Physcomitrium patens
PRCOL_00003978 Prasinoderma coloniale
PRCOL_00004613 Prasinoderma coloniale
Prupe.1G388900 Prunus persica
Prupe.1G389000 Prunus persica
Prupe.1G491400 Prunus persica
Prupe.7G232700 Prunus persica
Psat5g045160 Pisum sativum
Psat5g085360 Pisum sativum
Psat6g011440 Pisum sativum
Psat7g013400 Pisum sativum
PSO170G3432 Papaver somniferum
PSO210G1351 Papaver somniferum
PSO210G5821 Papaver somniferum
PSO541G1100 Papaver somniferum
PSO541G2686 Papaver somniferum
PSO675G1656 Papaver somniferum
PSO675G6998 Papaver somniferum
PSO782G0427 Papaver somniferum
PSO782G3939 Papaver somniferum
PSO832G1970 Papaver somniferum
QL02p006279 Quercus lobata
QL02p006284 Quercus lobata
QL02p043332 Quercus lobata
QL09p033059 Quercus lobata
RcHm_v2.0_Chr2g0090191 Rosa chinensis
RcHm_v2.0_Chr2g0136211 Rosa chinensis
RcHm_v2.0_Chr6g0296471 Rosa chinensis
RcHm_v2.0_Chr6g0299921 Rosa chinensis
RcHm_v2.0_Chr6g0299931 Rosa chinensis
RcHm_v2.0_Chr7g0238341 Rosa chinensis
Rhsim03G0240800 Rhododendron simsii
Rhsim06G0041100 Rhododendron simsii
Rhsim06G0041200 Rhododendron simsii
Rhsim07G0233500 Rhododendron simsii
Sabra02G0062400 Salix brachista
Sabra14G0026100 Salix brachista
Sabra14G0026200 Salix brachista
Sabra18G0068900 Salix brachista
SalBow7G2816 Salvia bowleyana
SalBow8G1709 Salvia bowleyana
SalBow8G2826 Salvia bowleyana
Sc08g0007500 Simmondsia chinensis
Sc15g0006520 Simmondsia chinensis
Sc15g0006530 Simmondsia chinensis
Sed0000371 Sechium edule
Sed0003592 Sechium edule
Sed0004680 Sechium edule
Sed0013651 Sechium edule
Sed0015309 Sechium edule
Sed0016077 Sechium edule
Sed0018760 Sechium edule
SEGI_27428 Sequoiadendron giganteum
SGA_v2.0_scaffold14G07024 Striga asiatica
SGA_v2.0_scaffold30G12374 Striga asiatica
SGA_v2.0_scaffold372G50156 Striga asiatica
SGA_v2.0_scaffold457G51935 Striga asiatica
SGA_v2.0_scaffold558G52916 Striga asiatica
SGA_v2.0_scaffold62G21580 Striga asiatica
SHI02728 Sapria himalayana
SMO230G0081 Selaginella moellendorffii
SMO244G0024 Selaginella moellendorffii
SMO270G0131 Selaginella moellendorffii
SMO334G0087 Selaginella moellendorffii
SMO347G0219 Selaginella moellendorffii
Solyc04g079540.3 Solanum lycopersicum
Solyc04g079550.4 Solanum lycopersicum
Solyc12g007120.2 Solanum lycopersicum
Sopen04g033120 Solanum pennellii
Sopen04g033130 Solanum pennellii
Sopen12g003100 Solanum pennellii
Sp1g05590 Schrenkiella parvula
Sp1g34690 Schrenkiella parvula
Sp3g22370 Schrenkiella parvula
Sp4g12990 Schrenkiella parvula
TAR381G1355 Trochodendron aralioides
TAR628G0657 Trochodendron aralioides
TAR628G1098 Trochodendron aralioides
TAR636G2767 Trochodendron aralioides
THA.LOC104798781 Tarenaya hassleriana
THA.LOC104808769 Tarenaya hassleriana
THA.LOC104815189 Tarenaya hassleriana
THA.LOC104815190 Tarenaya hassleriana
Thecc.08G015700 Theobroma cacao
Thecc.08G015800 Theobroma cacao
Thecc.08G131400 Theobroma cacao
Thecc.09G108500 Theobroma cacao
Thecc.09G108700 Theobroma cacao
Thhalv10002622m.g Eutrema salsugineum
Thhalv10008025m.g Eutrema salsugineum
Thhalv10011550m.g Eutrema salsugineum
Thhalv10016873m.g Eutrema salsugineum
TPR.G13480 Trifolium pratense
TPR.G13681 Trifolium pratense
TPR.G26065 Trifolium pratense
TWI32G0819 Tripterygium wilfordii
TWI34G1021 Tripterygium wilfordii
TWI34G1761 Tripterygium wilfordii
TWI36G0742 Tripterygium wilfordii
TWI56G1268 Tripterygium wilfordii
unitig_22.g6775 Utricularia gibba
unitig_8.g5011 Utricularia gibba
vmacro04473 Vaccinium macrocarpon
vmacro06224 Vaccinium macrocarpon
vmacro21579 Vaccinium macrocarpon
vmacro21580 Vaccinium macrocarpon
VMungo0251G1520 Vigna mungo
VMungo0647G1436 Vigna mungo
VMungo1309G1434 Vigna mungo
VMungo1309G3068 Vigna mungo
Zm00001eb058500 Zea mays
Zm00001eb058520 Zea mays
Zm00001eb214120 Zea mays
Zm00001eb214130 Zea mays
Zm00001eb237700 Zea mays
Zm00001eb314690 Zea mays
Zm00001eb434520 Zea mays

User provided reference genes

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