If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' 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'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 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'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 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'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 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'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 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'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 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'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 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'228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 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'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 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=> 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 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'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 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array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 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'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' 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'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 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=> 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 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'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 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'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 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'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 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=> 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 'camsi', 'CSS0005241' => 'camsi', 'CSS0005392' => 'camsi', 'CSS0010034' => 'camsi', 'CSS0012224' => 'camsi', 'CSS0015688' => 'camsi', 'CSS0021579' => 'camsi', 'CSS0033511' => 'camsi', 'CSS0048670' => 'camsi', 'DCAR_005443' => 'dca', 'DCAR_010598' => 'dca', 'DCAR_020120' => 'dca', 'DCAR_020231' => 'dca', 'DCAR_024748' => 'dca', 'DCAR_024938' => 'dca', 'DCAR_025172' => 'dca', 'DCAR_026451' => 'dca', 'DCAR_030787' => 'dca', 'DCAR_031892' => 'dca', 'Dinv34430' => 'din', 'Duzib128G0904' => 'dzi', 'Duzib177G0996' => 'dzi', 'ECA238G4190' => 'eca', 'EL10Ac4g07867' => 'bvu', 'EL10Ac8g19169' => 'bvu', 'Eucgr.G03024' => 'egr', 'FAN01G0349' => 'fan', 'FAN01G3048' => 'fan', 'FAN02G2262' => 'fan', 'FAN02G2707' => 'fan', 'FAN02G3048' => 'fan', 'FAN02G4516' => 'fan', 'FAN03G0686' => 'fan', 'FAN03G1391' => 'fan', 'FAN03G1971' => 'fan', 'FAN03G2155' => 'fan', 'FAN04G0891' => 'fan', 'FAN04G1353' => 'fan', 'FAN04G2125' => 'fan', 'FAN05G0722' => 'fan', 'FAN05G1224' => 'fan', 'FAN05G3178' => 'fan', 'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 'HanXRQChr14g0461341' => 'han', 'HanXRQChr15g0489281' => 'han', 'Hma1.2p1_0148F.1_g066070' => 'hma', 'Hma1.2p1_0148F.1_g066080' => 'hma', 'Hma1.2p1_0228F.1_g096560' => 'hma', 'Hma1.2p1_0667F.1_g199730' => 'hma', 'Hma1.2p1_0710F.1_g207390' => 'hma', 'Hma1.2p1_0786F.1_g217690' => 'hma', 'Hma1.2p1_1035F.1_g250490' => 'hma', 'Hma1.2p1_1123F.1_g259380' => 'hma', 'Hma1.2p1_2073F.1_g313200' => 'hma', 'HPP92_008179' => 'vpl', 'HPP92_015385' => 'vpl', 'HPP92_018135' => 'vpl', 'HPP92_019445' => 'vpl', 'HPP92_027007' => 'vpl', 'Hund01344' => 'sun', 'Hund08047' => 'sun', 'Hund08681' => 'sun', 'Hund09957' => 'sun', 'Hund12566' => 'sun', 'Hund12640' => 'sun', 'Hund14971' => 'sun', 'Hund16990' => 'sun', 'Hund18223' => 'sun', 'Hund20247' => 'sun', 'Hund21358' => 'sun', 'Hund23629' => 'sun', 'Hund23719' => 'sun', 'Hund24071' => 'sun', 'Hund25697' => 'sun', 'Hund25751' => 'sun', 'Hund26024' => 'sun', 'Hund26462' => 'sun', 'Hund26464' => 'sun', 'Hund29878' => 'sun', 'Hund29879' => 'sun', 'Hund30880' => 'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ), 'gf_id' => 'HOM05D000876', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000876' ), 'data_identifier' => 'HOM05D000876', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000876', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '72' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p30570' => 'bna', 'Aa31LG11G6810' => 'aar', 'Aa31LG3G4690' => 'aar', 'Actinidia04386' => 'ach', 'Actinidia07377' => 'ach', 'Actinidia09792' => 'ach', 'Actinidia15148' => 'ach', 'Actinidia19685' => 'ach', 'Actinidia21496' => 'ach', 'Actinidia32586' => 'ach', 'Actinidia32819' => 'ach', 'Actinidia33947' => 'ach', 'Actinidia36308' => 'ach', 'Actinidia38818' => 'ach', 'Actinidia40454' => 'ach', 'Ah.01g014380' => 'amhyb', 'Ah.03g141330' => 'amhyb', 'Ah.08g220620' => 'amhyb', 'Ah.08g221690' => 'amhyb', 'Ah.08g221700' => 'amhyb', 'Ah.08g222740' => 'amhyb', 'AL3G22820' => 'aly', 'AL3G52710' => 'aly', 'AL6G15700' => 'aly', 'Aqoxy4G02707' => 'aox', 'Aqoxy5G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07JIFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.14QLMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KK7V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2911W9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2F6TQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41KYN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WC8BS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60RZCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6409NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EEP2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78M2T9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87KLM0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.880EA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89H18N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JI2QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BH5A7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0SCCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD1W6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLVP0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYT58T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GA2210' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5U8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS73AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2M43I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2TZJW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4JMBP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I98WG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGR54D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN5DBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J14BQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JI6NZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRV8YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KK4V7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMV29V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LS1Y2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6NFFQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8N6J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU3CLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQE6TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY2INN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7N27H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PX1Q7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAIE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6BV2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7XLBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF7S57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SF7PFS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD2IRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W78D6Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WC8NTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB306U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU1E63' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU6CAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZN40H3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE95K' => 'arhy', 'AT2G19220' => 'ath', 'AT3G11290' => 'ath', 'AT3G11300' => 'ath', 'AT3G11310' => 'ath', 'AT5G05800' => 'ath', 'Atru.chr10.1597' => 'acertr', 'Atru.chr10.824' => 'acertr', 'Atru.chr11.998' => 'acertr', 'Atru.chr12.1553' => 'acertr', 'Atru.chr12.253' => 'acertr', 'Atru.chr2.1367' => 'acertr', 'Atru.chr3.1562' => 'acertr', 'Atru.chr3.1584' => 'acertr', 'Atru.chr4.1880' => 'acertr', 'Atru.chr5.3371' => 'acertr', 'AUR62029027' => 'cqu', 'AUR62032183' => 'cqu', 'AUR62033764' => 'cqu', 'AUR62033924' => 'cqu', 'AUR62036787' => 'cqu', 'BcaC06g32288' => 'bca', 'BcaC09g48165' => 'bca', 'BcaNung06184' => 'bca', 'BolC1t05323H' => 'bol', 'BolC9t59867H' => 'bol', 'BraA01t04190Z' => 'bra', 'BraA10t45098Z' => 'bra', 'C09p71030' => 'bna', 'CAN.G462.3' => 'can', 'CANSAT01G0041' => 'cansat', 'CANSAT01G0374' => 'cansat', 'CANSAT01G2704' => 'cansat', 'CANSAT11G0810' => 'cansat', 'CANSAT11G0869' => 'cansat', 'CANSAT11G2698' => 'cansat', 'CANSAT21G1546' => 'cansat', 'CANSAT21G1745' => 'cansat', 'CANSAT21G2246' => 'cansat', 'CANSAT25G2261' => 'cansat', 'CANSAT35G0018' => 'cansat', 'CANSAT35G1570' => 'cansat', 'CANSAT54G1231' => 'cansat', 'CANSAT56G0752' => 'cansat', 'CANSAT56G2973' => 'cansat', 'CANSAT64G0872' => 'cansat', 'CANSAT64G0985' => 'cansat', 'CANSAT78G0895' => 'cansat', 'CANSAT78G1001' => 'cansat', 'CANSAT78G1247' => 'cansat', 'CARHR085850' => 'chi', 'CARHR207460' => 'chi', 'Carub.0003s1061' => 'cru', 'Carub.0003s1062' => 'cru', 'Carub.0003s3346' => 'cru', 'Carub.0006s0470' => 'cru', 'Ciclev10002192m.g' => 'ccl', 'Ciclev10013387m.g' => 'ccl', 'Ciclev10023896m.g' => 'ccl', 'Ciclev10027235m.g' => 'ccl', 'Ciclev10031384m.g' => 'ccl', 'Ciclev10033761m.g' => 'ccl', 'CiPaw.02G189400' => 'cil', 'CiPaw.04G117800' => 'cil', 'CiPaw.04G143900' => 'cil', 'CiPaw.08G085800' => 'cil', 'CiPaw.08G099200' => 'cil', 'CiPaw.10G065300' => 'cil', 'CiPaw.10G139000' => 'cil', 'CiPaw.14G042800' => 'cil', 'CiPaw.15G017800' => 'cil', 'COL.COLO4_03464' => 'col', 'COL.COLO4_03588' => 'col', 'COL.COLO4_03686' => 'col', 'COL.COLO4_04748' => 'col', 'COL.COLO4_12988' => 'col', 'COL.COLO4_12989' => 'col', 'COL.COLO4_19726' => 'col', 'COL.COLO4_29920' => 'col', 'Cpa.g.sc19.224' => 'cpa', 'CsaV3_1G043330' => 'csa', 'CsaV3_5G004940' => 'csa', 'CSS0003136' => 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'FAN05G3579' => 'fan', 'FAN05G4445' => 'fan', 'FAN05G4669' => 'fan', 'FAN06G2005' => 'fan', 'FAN06G3321' => 'fan', 'FAN07G1275' => 'fan', 'FAN07G1771' => 'fan', 'FAN07G2331' => 'fan', 'FAN08G0806' => 'fan', 'FAN08G3019' => 'fan', 'FAN09G0193' => 'fan', 'FAN09G0603' => 'fan', 'FAN09G0655' => 'fan', 'FAN09G3146' => 'fan', 'FAN09G3305' => 'fan', 'FAN09G3353' => 'fan', 'FAN09G4256' => 'fan', 'FAN10G0055' => 'fan', 'FAN10G0150' => 'fan', 'FAN10G0572' => 'fan', 'FAN10G2634' => 'fan', 'FAN10G2724' => 'fan', 'FAN10G2856' => 'fan', 'FAN10G3448' => 'fan', 'FAN10G3635' => 'fan', 'FAN10G3740' => 'fan', 'FAN10G3852' => 'fan', 'FAN11G2191' => 'fan', 'FAN11G2465' => 'fan', 'FAN12G1859' => 'fan', 'FAN12G2878' => 'fan', 'FAN14G3310' => 'fan', 'FAN14G4311' => 'fan', 'FAN14G5115' => 'fan', 'FAN14G5489' => 'fan', 'FAN15G0148' => 'fan', 'FAN16G1569' => 'fan', 'FAN17G0164' => 'fan', 'FAN17G0428' => 'fan', 'FAN17G1755' => 'fan', 'FAN17G2481' => 'fan', 'FAN17G2644' => 'fan', 'FAN17G2734' => 'fan', 'FAN19G0003' => 'fan', 'FAN19G2459' => 'fan', 'FAN20G0415' => 'fan', 'FAN21G0561' => 'fan', 'FAN21G1280' => 'fan', 'FAN21G2068' => 'fan', 'FAN21G2190' => 'fan', 'FAN21G2291' => 'fan', 'FAN22G0137' => 'fan', 'FAN22G0382' => 'fan', 'FAN22G1013' => 'fan', 'FAN23G0201' => 'fan', 'FAN23G0726' => 'fan', 'FAN23G2351' => 'fan', 'FAN24G3169' => 'fan', 'FAN25G1382' => 'fan', 'FAN25G3616' => 'fan', 'FAN26G1613' => 'fan', 'FAN26G2716' => 'fan', 'FAN28G0183' => 'fan', 'FAN28G0660' => 'fan', 'FAN28G1471' => 'fan', 'FvH4_1g19130' => 'fve', 'FvH4_1g28413' => 'fve', 'FvH4_2g11122' => 'fve', 'FvH4_2g31320' => 'fve', 'FvH4_3g19652' => 'fve', 'FvH4_3g29921' => 'fve', 'FvH4_4g07761' => 'fve', 'FvH4_4g20923' => 'fve', 'FvH4_5g23913' => 'fve', 'FvH4_6g38850' => 'fve', 'FvH4_6g39920' => 'fve', 'FvH4_6g53022' => 'fve', 'FvH4_7g00070' => 'fve', 'FvH4_7g08972' => 'fve', 'FvH4_7g12221' => 'fve', 'FvH4_7g23930' => 'fve', 'Glyma.01G031000' => 'gma', 'Glyma.01G052000' => 'gma', 'Glyma.02G166900' => 'gma', 'Glyma.04G129400' => 'gma', 'Glyma.05G069200' => 'gma', 'Glyma.06G250600' => 'gma', 'Glyma.08G267500' => 'gma', 'Glyma.09G090801' => 'gma', 'Glyma.15G140101' => 'gma', 'Glyma.15G226650' => 'gma', 'Glyma.17G177400' => 'gma', 'Glyma.18G094800' => 'gma', 'Glyma.18G110601' => 'gma', 'Glyma.18G134450' => 'gma', 'Glyma.18G191100' => 'gma', 'Glyma.19G073700' => 'gma', 'Glyma.19G101700' => 'gma', 'Gohir.D08G116700' => 'ghi', 'Gorai.001G138200' => 'gra', 'Gorai.001G157700' => 'gra', 'Gorai.001G157800' => 'gra', 'Gorai.001G159400' => 'gra', 'Gorai.001G187700' => 'gra', 'Gorai.001G209600' => 'gra', 'Gorai.001G222100' => 'gra', 'Gorai.002G128100' => 'gra', 'Gorai.002G171500' => 'gra', 'Gorai.002G171600' => 'gra', 'Gorai.002G176400' => 'gra', 'Gorai.002G181500' => 'gra', 'Gorai.003G031500' => 'gra', 'Gorai.004G036300' => 'gra', 'Gorai.004G036600' => 'gra', 'Gorai.004G102900' => 'gra', 'Gorai.004G114400' => 'gra', 'Gorai.004G157500' => 'gra', 'Gorai.004G170900' => 'gra', 'Gorai.004G173400' => 'gra', 'Gorai.004G173500' => 'gra', 'Gorai.005G095500' => 'gra', 'Gorai.005G104700' => 'gra', 'Gorai.005G105100' => 'gra', 'Gorai.005G108600' => 'gra', 'Gorai.005G119800' => 'gra', 'Gorai.005G209400' => 'gra', 'Gorai.005G210400' => 'gra', 'Gorai.006G019900' => 'gra', 'Gorai.006G045600' => 'gra', 'Gorai.006G056900' => 'gra', 'Gorai.006G093000' => 'gra', 'Gorai.006G154000' => 'gra', 'Gorai.007G119600' => 'gra', 'Gorai.007G119700' => 'gra', 'Gorai.007G190400' => 'gra', 'Gorai.007G201300' => 'gra', 'Gorai.007G209100' => 'gra', 'Gorai.007G221200' => 'gra', 'Gorai.007G232100' => 'gra', 'Gorai.007G258900' => 'gra', 'Gorai.007G271200' => 'gra', 'Gorai.007G284700' => 'gra', 'Gorai.008G032400' => 'gra', 'Gorai.008G062400' => 'gra', 'Gorai.008G084800' => 'gra', 'Gorai.008G093400' => 'gra', 'Gorai.008G247700' => 'gra', 'Gorai.009G029000' => 'gra', 'Gorai.009G342300' => 'gra', 'Gorai.009G359600' => 'gra', 'Gorai.009G392800' => 'gra', 'Gorai.010G124300' => 'gra', 'Gorai.010G149000' => 'gra', 'Gorai.010G169700' => 'gra', 'Gorai.010G172100' => 'gra', 'Gorai.011G083200' => 'gra', 'Gorai.011G103400' => 'gra', 'Gorai.011G115600' => 'gra', 'Gorai.011G116300' => 'gra', 'Gorai.011G122600' => 'gra', 'Gorai.011G123600' => 'gra', 'Gorai.011G134900' => 'gra', 'Gorai.011G173800' => 'gra', 'Gorai.011G190800' => 'gra', 'Gorai.012G070700' => 'gra', 'Gorai.012G085300' => 'gra', 'Gorai.012G085400' => 'gra', 'Gorai.012G109800' => 'gra', 'Gorai.012G128500' => 'gra', 'Gorai.013G041500' => 'gra', 'Gorai.013G094800' => 'gra', 'Gorai.013G100900' => 'gra', 'Gorai.013G110200' => 'gra', 'Gorai.013G112300' => 'gra', 'Gorai.013G161600' => 'gra', 'Gorai.013G171200' => 'gra', 'Gorai.013G184300' => 'gra', 'Gorai.013G197100' => 'gra', 'Gorai.N003000' => 'gra', 'Gorai.N004200' => 'gra', 'GSVIVG01016378001' => 'vvi', 'HanXRQChr05g0143471' => 'han', 'HanXRQChr09g0245471' => 'han', 'HanXRQChr09g0265901' => 'han', 'HanXRQChr09g0266751' => 'han', 'HanXRQChr10g0300051' => 'han', 'HanXRQChr14g0446341' => 'han', 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'sun', 'Lalb_Chr16g0387131' => 'lal', 'Lalb_Chr19g0128571' => 'lal', 'Lalb_Chr20g0116631' => 'lal', 'Lj1C949T6' => 'lonja', 'Lj1C949T7' => 'lonja', 'Lj1g0012065' => 'lja', 'Lj1g0019277' => 'lja', 'Lj2g0008174' => 'lja', 'Lj5g0006232' => 'lja', 'Lj6g0013767' => 'lja', 'Lj6g0025621' => 'lja', 'Lj6g0027186' => 'lja', 'Lsat_1_v5_gn_9_69340' => 'lsa', 'MD01G1146000' => 'mdo', 'MD06G1090800' => 'mdo', 'MD15G1314200' => 'mdo', 'MD16G1231800' => 'mdo', 'Medtr0693s0050' => 'mtr', 'Medtr0961s0020' => 'mtr', 'Medtr1g016370' => 'mtr', 'Medtr1g080080' => 'mtr', 'Medtr2g018710' => 'mtr', 'Medtr2g054730' => 'mtr', 'Medtr2g086350' => 'mtr', 'Medtr2g435870' => 'mtr', 'Medtr2g436180' => 'mtr', 'Medtr2g436540' => 'mtr', 'Medtr3g015600' => 'mtr', 'Medtr3g023200' => 'mtr', 'Medtr3g110155' => 'mtr', 'Medtr3g448480' => 'mtr', 'Medtr4g029080' => 'mtr', 'Medtr4g045750' => 'mtr', 'Medtr4g046743' => 'mtr', 'Medtr4g061370' => 'mtr', 'Medtr4g128327' => 'mtr', 'Medtr5g054570' => 'mtr', 'Medtr5g055390' => 'mtr', 'Medtr7g029320' => 'mtr', 'Medtr7g034425' => 'mtr', 'Medtr7g056530' => 'mtr', 'Medtr8g006585' => 'mtr', 'Medtr8g006695' => 'mtr', 'Medtr8g054100' => 'mtr', 'Medtr8g105430' => 'mtr', 'MELO3C029694.2' => 'cme', 'Migut.F01438' => 'egut', 'Nitab4.5_0000072g0060' => 'nta', 'Nitab4.5_0000506g0260' => 'nta', 'Nitab4.5_0012620g0020' => 'nta', 'Nn8g39983' => 'nnu', 'Oeu032678.2' => 'oeu', 'Oeu044768.1' => 'oeu', 'Oeu051245.1' => 'oeu', 'Oeu060831.2' => 'oeu', 'Os03g0814800' => 'osa', 'Os04g0243400' => 'osa', 'Os08g0338000' => 'osa', 'Os10g0187701' => 'osa', 'Os12g0207200' => 'osa', 'Peaxi162Scf00002g02220' => 'pax', 'Peaxi162Scf00973g00319' => 'pax', 'PGR044G2648' => 'pgr', 'Potri.001G182200' => 'ptr', 'Potri.001G195601' => 'ptr', 'Potri.001G205601' => 'ptr', 'Potri.001G238000' => 'ptr', 'Potri.001G243108' => 'ptr', 'Potri.001G256500' => 'ptr', 'Potri.001G268908' => 'ptr', 'Potri.001G297801' => 'ptr', 'Potri.001G299100' => 'ptr', 'Potri.001G339400' => 'ptr', 'Potri.001G370432' => 'ptr', 'Potri.001G391600' => 'ptr', 'Potri.001G402200' => 'ptr', 'Potri.002G097132' => 'ptr', 'Potri.002G200700' => 'ptr', 'Potri.002G214475' => 'ptr', 'Potri.003G006700' => 'ptr', 'Potri.003G192350' => 'ptr', 'Potri.004G097601' => 'ptr', 'Potri.004G127420' => 'ptr', 'Potri.004G168200' => 'ptr', 'Potri.004G230401' => 'ptr', 'Potri.005G127650' => 'ptr', 'Potri.005G135800' => 'ptr', 'Potri.005G153700' => 'ptr', 'Potri.005G163200' => 'ptr', 'Potri.006G116400' => 'ptr', 'Potri.006G149001' => 'ptr', 'Potri.006G174801' => 'ptr', 'Potri.007G062850' => 'ptr', 'Potri.007G118701' => 'ptr', 'Potri.008G074066' => 'ptr', 'Potri.008G176600' => 'ptr', 'Potri.008G189300' => 'ptr', 'Potri.008G196901' => 'ptr', 'Potri.008G205550' => 'ptr', 'Potri.008G209401' => 'ptr', 'Potri.008G217500' => 'ptr', 'Potri.010G018401' => 'ptr', 'Potri.010G019001' => 'ptr', 'Potri.010G022201' => 'ptr', 'Potri.010G045701' => 'ptr', 'Potri.010G076000' => 'ptr', 'Potri.010G132850' => 'ptr', 'Potri.010G190650' => 'ptr', 'Potri.011G094000' => 'ptr', 'Potri.011G125150' => 'ptr', 'Potri.013G071200' => 'ptr', 'Potri.013G094950' => 'ptr', 'Potri.013G144650' => 'ptr', 'Potri.014G026000' => 'ptr', 'Potri.014G056100' => 'ptr', 'Potri.014G061450' => 'ptr', 'Potri.014G091925' => 'ptr', 'Potri.015G012100' => 'ptr', 'Potri.015G064502' => 'ptr', 'Potri.015G137800' => 'ptr', 'Potri.017G062600' => 'ptr', 'Potri.017G072700' => 'ptr', 'Potri.018G054501' => 'ptr', 'Potri.018G075600' => 'ptr', 'Potri.019G061000' => 'ptr', 'Prupe.1G173000' => 'ppe', 'Prupe.2G245300' => 'ppe', 'Prupe.4G113600' => 'ppe', 'Prupe.5G020800' => 'ppe', 'Prupe.5G207000' => 'ppe', 'Prupe.6G155900' => 'ppe', 'Prupe.8G016500' => 'ppe', 'Psat4g162920' => 'psa', 'PSO063G5726' => 'pso', 'PSO170G6809' => 'pso', 'PSO507G0009' => 'pso', 'PSO541G2915' => 'pso', 'PSO782G4265' => 'pso', 'QL01p024703' => 'qlo', 'QL01p028137' => 'qlo', 'QL01p041709' => 'qlo', 'QL02p030443' => 'qlo', 'QL03p014458' => 'qlo', 'QL04p028038' => 'qlo', 'QL04p036904' => 'qlo', 'QL04p079613' => 'qlo', 'QL06p033300' => 'qlo', 'QL07p002445' => 'qlo', 'QL08p009302' => 'qlo', 'QL09p002249' => 'qlo', 'QL10p040122' => 'qlo', 'RcHm_v2.0_Chr1g0369261' => 'rch', 'RcHm_v2.0_Chr2g0103961' => 'rch', 'RcHm_v2.0_Chr2g0128681' => 'rch', 'RcHm_v2.0_Chr2g0153151' => 'rch', 'RcHm_v2.0_Chr3g0459461' => 'rch', 'RcHm_v2.0_Chr4g0406011' => 'rch', 'RcHm_v2.0_Chr4g0428601' => 'rch', 'RcHm_v2.0_Chr5g0029731' => 'rch', 'RcHm_v2.0_Chr5g0069971' => 'rch', 'RcHm_v2.0_Chr6g0253171' => 'rch', 'RcHm_v2.0_Chr6g0254701' => 'rch', 'RcHm_v2.0_Chr7g0199281' => 'rch', 'Rhsim03G0139500' => 'rsi', 'Rhsim04G0159900' => 'rsi', 'Rhsim05G0157800' => 'rsi', 'Rhsim06G0024000' => 'rsi', 'Rhsim06G0077800' => 'rsi', 'Rhsim06G0093500' => 'rsi', 'Rhsim09G0041300' => 'rsi', 'Rhsim10G0146900' => 'rsi', 'Rhsim12G0127300' => 'rsi', 'Sc03g0004530' => 'sci', 'Sed0005915' => 'sed', 'SHI18348' => 'shi', 'Solyc12g039050.3' => 'sly', 'Sp3g09570' => 'spa', 'Sp6g37100' => 'spa', 'TAR164G0004' => 'tar', 'TAR383G0393' => 'tar', 'THA.LOC104816562' => 'tha', 'THA.LOC104823140' => 'tha', 'Thecc.05G288300' => 'tca', 'Thhalv10015821m.g' => 'esa', 'Thhalv10020614m.g' => 'esa', 'TPR.G20422' => 'tpr', 'TPR.G21495' => 'tpr', 'TPR.G22361' => 'tpr', 'TPR.G23523' => 'tpr', 'TPR.G23560' => 'tpr', 'TPR.G25760' => 'tpr', 'TPR.G25769' => 'tpr', 'TPR.G30704' => 'tpr', 'TPR.G33899' => 'tpr', 'TPR.G36933' => 'tpr', 'TPR.G698' => 'tpr', 'TWI09G0663' => 'twi', 'TWI09G1617' => 'twi', 'TWI12G1481' => 'twi', 'TWI14G0606' => 'twi', 'TWI15G1211' => 'twi', 'TWI18G0373' => 'twi', 'TWI23G0996' => 'twi', 'TWI23G1241' => 'twi', 'TWI31G1090' => 'twi', 'TWI31G1265' => 'twi', 'TWI31G1327' => 'twi', 'TWI32G0987' => 'twi', 'TWI34G0310' => 'twi', 'TWI34G1578' => 'twi', 'TWI34G1697' => 'twi', 'TWI34G1784' => 'twi', 'TWI36G1398' => 'twi', 'TWI38G0708' => 'twi', 'TWI38G0974' => 'twi', 'TWI38G1581' => 'twi', 'TWI38G1661' => 'twi', 'TWI38G2154' => 'twi', 'TWI39G0385' => 'twi', 'TWI53G1733' => 'twi', 'TWI53G2118' => 'twi', 'TWI56G0298' => 'twi', 'TWI56G0680' => 'twi', 'TWI56G0962' => 'twi', 'TWI56G1418' => 'twi', 'TWI60G0714' => 'twi', 'TWI60G1225' => 'twi', 'TWI63G0199' => 'twi', 'TWI63G0856' => 'twi', 'TWI73G0087' => 'twi', 'TWI73G0844' => 'twi', 'TWI74G0206' => 'twi', 'TWI75G0176' => 'twi', 'TWI75G0526' => 'twi', 'TWI75G0795' => 'twi', 'TWI75G1494' => 'twi', 'TWI79G1235' => 'twi', 'TWI79G1428' => 'twi', 'TWI81G0234' => 'twi', 'TWI81G0542' => 'twi', 'TWI81G0918' => 'twi', 'TWI81G1072' => 'twi', 'Zm00001eb083270' => 'zma', 'Zm00001eb152850' => 'zma', 'Zm00001eb169840' => 'zma', 'Zm00001eb217070' => 'zma', 'Zm00001eb238790' => 'zma', 'Zm00001eb261880' => 'zma', 'Zm00001eb383940' => 'zma' ) $gf_id = 'HOM05D000876' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000876' ) $data_identifier = 'HOM05D000876' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 2, 'arhy' => (int) 56, 'ath' => (int) 5, 'acertr' => (int) 10, 'cqu' => (int) 5, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 1, 'cansat' => (int) 20, 'chi' => (int) 2, 'cru' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 9, 'col' => (int) 8, 'cpa' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 1, 'dzi' => (int) 2, 'eca' => (int) 1, 'bvu' => (int) 2, 'egr' => (int) 1, 'fan' => (int) 81, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 1, 'gra' => (int) 81, 'vvi' => (int) 1, 'han' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 22, 'lal' => (int) 3, 'lonja' => (int) 2, 'lja' => (int) 7, 'lsa' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 28, 'cme' => (int) 1, 'egut' => (int) 1, 'nta' => (int) 3, 'nnu' => (int) 1, 'oeu' => (int) 4, 'osa' => (int) 5, 'pax' => (int) 2, 'pgr' => (int) 1, 'ptr' => (int) 62, 'ppe' => (int) 7, 'psa' => (int) 1, 'pso' => (int) 5, 'qlo' => (int) 13, 'rch' => (int) 12, 'rsi' => (int) 9, 'sci' => (int) 1, 'sed' => (int) 1, 'shi' => (int) 1, 'sly' => (int) 1, 'spa' => (int) 2, 'tar' => (int) 2, 'tha' => (int) 2, 'tca' => (int) 1, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 46, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb383940' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1